Wall clock time and date at job start Mon Mar 30 2020 02:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38349 * 119.91291 * 2 1 4 4 C 1.38029 * 120.09219 * 179.97438 * 3 2 1 5 5 C 1.50694 * 120.04621 * 179.97438 * 4 3 2 6 6 C 1.39099 * 119.90742 * 0.02562 * 4 3 2 7 7 N 1.39301 * 120.08664 * 180.02562 * 6 4 3 8 8 C 1.36850 * 119.99879 * 179.97438 * 7 6 4 9 9 H 1.08007 * 119.99873 * 359.97438 * 8 7 6 10 10 C 1.38791 * 120.00352 * 179.97438 * 8 7 6 11 11 N 1.31594 * 119.99776 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00237 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47376 * 60.00052 * 12 10 8 14 14 H 1.48507 * 109.47031 * 179.97438 * 12 10 8 15 15 H 1.48505 * 109.47168 * 299.99603 * 12 10 8 16 16 C 1.39057 * 119.82258 * 359.97438 * 6 4 3 17 17 C 1.38075 * 119.90857 * 0.02562 * 16 6 4 18 18 C 1.50706 * 119.95479 * 179.71996 * 17 16 6 19 19 H 1.08997 * 109.47097 * 269.99804 * 1 2 3 20 20 H 1.09003 * 109.46578 * 29.99313 * 1 2 3 21 21 H 1.09001 * 109.46929 * 149.99260 * 1 2 3 22 22 H 1.08002 * 119.95181 * 359.97438 * 3 2 1 23 23 H 1.09000 * 109.47431 * 270.02509 * 5 4 3 24 24 H 1.08998 * 109.47272 * 30.02700 * 5 4 3 25 25 H 1.08998 * 109.47174 * 150.02220 * 5 4 3 26 26 H 0.96998 * 119.99826 * 359.96977 * 7 6 4 27 27 H 0.96995 * 120.00108 * 179.97438 * 11 10 8 28 28 H 1.07998 * 120.04517 * 180.02562 * 16 6 4 29 29 H 1.09001 * 109.47113 * 89.99769 * 18 17 16 30 30 H 1.08990 * 109.47358 * 209.99862 * 18 17 16 31 31 H 1.09007 * 109.47084 * 330.00472 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1992 0.0000 4 6 3.5772 1.2035 0.0005 5 6 4.3277 2.5103 0.0000 6 6 4.2746 -0.0001 0.0005 7 7 5.6676 -0.0001 0.0016 8 6 6.3518 -1.1852 0.0021 9 1 5.8117 -2.1206 0.0021 10 6 7.7397 -1.1854 0.0027 11 7 8.3977 -0.0457 0.0022 12 14 8.6736 -2.8031 0.0041 13 1 8.3154 -3.5826 -1.2080 14 1 10.1337 -2.5317 0.0039 15 1 8.3144 -3.5809 1.2171 16 6 3.5774 -1.2032 0.0005 17 6 2.1966 -1.1989 0.0000 18 6 1.4400 -2.5022 -0.0064 19 1 -0.3633 0.0000 1.0276 20 1 -0.3632 0.8901 -0.5138 21 1 -0.3633 -0.8899 -0.5140 22 1 1.6547 2.1332 -0.0004 23 1 4.5087 2.8250 -1.0278 24 1 3.7369 3.2688 0.5134 25 1 5.2804 2.3824 0.5139 26 1 6.1525 0.8400 0.0019 27 1 9.3677 -0.0458 0.0029 28 1 4.1151 -2.1398 0.0010 29 1 1.2572 -2.8212 1.0197 30 1 0.4882 -2.3672 -0.5199 31 1 2.0275 -3.2609 -0.5235 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258824670.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:43 Heat of formation + Delta-G solvation = 6.879287 kcal Electronic energy + Delta-G solvation = -12958.220495 eV Core-core repulsion = 10817.566224 eV Total energy + Delta-G solvation = -2140.654271 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.81751 -35.51370 -33.10934 -31.73833 -29.97921 -28.45364 -25.92175 -24.72723 -23.23936 -21.01571 -18.96556 -17.65134 -15.92425 -15.03736 -14.39830 -13.84165 -13.67892 -13.48433 -12.87747 -12.73112 -12.25672 -12.19007 -11.89772 -11.57365 -11.52157 -11.30968 -11.19009 -10.93776 -10.60557 -10.34987 -10.06923 -9.78217 -9.65351 -8.58509 -7.58744 -6.52171 -6.51105 -3.68336 2.45183 2.63598 3.18127 3.19806 3.20236 4.08954 4.66112 5.23369 5.31874 5.63975 5.65899 5.84488 5.96669 5.98206 6.05329 6.14703 6.23278 6.30684 6.35860 6.37736 6.52202 6.59393 6.75362 7.12243 7.19264 7.31420 7.49990 7.63542 7.72364 7.83070 8.19932 8.81597 9.43232 9.62363 10.66306 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.039170 B = 0.009452 C = 0.007668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.665545 B = 2961.686049 C = 3650.601753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.217 4.217 3 C -0.055 4.055 4 C -0.214 4.214 5 C -0.093 4.093 6 C 0.214 3.786 7 N -0.565 5.565 8 C -0.299 4.299 9 H 0.100 0.900 10 C 0.017 3.983 11 N -0.898 5.898 12 Si 0.930 3.070 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.273 1.273 16 C -0.219 4.219 17 C -0.035 4.035 18 C -0.111 4.111 19 H 0.046 0.954 20 H 0.046 0.954 21 H 0.053 0.947 22 H 0.099 0.901 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.399 0.601 27 H 0.274 0.726 28 H 0.113 0.887 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.639 -0.439 -0.009 8.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.221 4.221 3 C -0.074 4.074 4 C -0.220 4.220 5 C -0.150 4.150 6 C 0.094 3.906 7 N -0.169 5.169 8 C -0.429 4.429 9 H 0.117 0.883 10 C -0.185 4.185 11 N -0.536 5.536 12 Si 0.757 3.243 13 H -0.199 1.199 14 H -0.208 1.208 15 H -0.199 1.199 16 C -0.244 4.244 17 C -0.036 4.036 18 C -0.167 4.167 19 H 0.064 0.936 20 H 0.065 0.935 21 H 0.072 0.928 22 H 0.118 0.882 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.236 0.764 27 H 0.084 0.916 28 H 0.131 0.869 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.126 -0.569 -0.010 8.146 hybrid contribution 0.888 -0.379 0.020 0.966 sum -7.238 -0.948 0.009 7.299 Atomic orbital electron populations 1.20487 0.93273 1.00698 1.00124 1.18910 0.94211 0.92648 1.16298 1.20241 0.92560 0.96104 0.98526 1.18999 0.93546 0.93071 1.16385 1.20416 0.99357 0.94603 1.00647 1.17660 0.84201 0.93002 0.95783 1.41052 1.01114 1.08834 1.65936 1.19677 0.89272 0.86602 1.47333 0.88261 1.25252 0.96715 0.98742 0.97800 1.69673 1.08866 1.25469 1.49556 0.85918 0.78322 0.81078 0.78998 1.19856 1.20780 1.19855 1.20245 0.92680 0.96586 1.14863 1.19225 0.93023 0.93647 0.97730 1.20781 0.99517 0.95223 1.01219 0.93551 0.93513 0.92844 0.88247 0.93049 0.92999 0.92663 0.76436 0.91643 0.86879 0.92183 0.92068 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.33 9.60 36.01 0.35 -0.98 16 2 C -0.22 -4.08 5.88 -104.56 -0.62 -4.70 16 3 C -0.06 -1.07 9.35 -39.62 -0.37 -1.44 16 4 C -0.21 -4.55 5.90 -104.38 -0.62 -5.16 16 5 C -0.09 -1.74 9.57 36.00 0.34 -1.40 16 6 C 0.21 5.07 6.60 -83.84 -0.55 4.52 16 7 N -0.57 -14.50 5.34 -9.60 -0.05 -14.55 16 8 C -0.30 -7.95 9.56 -15.11 -0.14 -8.09 16 9 H 0.10 2.54 5.68 -52.48 -0.30 2.25 16 10 C 0.02 0.45 5.50 -17.45 -0.10 0.36 16 11 N -0.90 -24.62 13.05 55.49 0.72 -23.89 16 12 Si 0.93 20.38 29.55 -169.99 -5.02 15.36 16 13 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 14 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 15 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 16 C -0.22 -4.94 8.96 -39.34 -0.35 -5.29 16 17 C -0.04 -0.69 5.88 -104.65 -0.62 -1.31 16 18 C -0.11 -1.74 9.60 36.01 0.35 -1.39 16 19 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 20 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 21 H 0.05 0.73 5.93 -51.93 -0.31 0.42 16 22 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 23 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.05 0.84 8.09 -51.93 -0.42 0.42 16 25 H 0.05 1.09 6.55 -51.93 -0.34 0.75 16 26 H 0.40 10.34 5.88 -40.82 -0.24 10.10 16 27 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.11 2.56 5.96 -52.49 -0.31 2.25 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.85 5.93 -51.93 -0.31 0.54 16 31 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 LS Contribution 256.64 15.07 3.87 3.87 Total: -1.00 -27.57 256.64 -6.70 -34.27 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -3.89 Total: 9.83 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: -2.33 Total: -24.89 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.67 Total: -38.44 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -27.57 -6.70 -34.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258824670.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.151 kcal (2) G-P(sol) polarization free energy of solvation -27.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds