Wall clock time and date at job start Mon Mar 30 2020 02:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38527 * 119.78968 * 2 1 4 4 C 1.37647 * 120.32859 * 179.75930 * 3 2 1 5 5 C 1.40793 * 119.89061 * 0.51041 * 4 3 2 6 6 C 1.41403 * 120.20582 * 179.72326 * 5 4 3 7 7 H 1.08004 * 119.99622 * 204.46913 * 6 5 4 8 8 C 1.39931 * 120.00181 * 24.46039 * 6 5 4 9 9 N 1.30825 * 119.99652 * 17.88608 * 8 6 5 10 10 Si 1.86799 * 120.00153 * 197.87802 * 8 6 5 11 11 H 1.48505 * 109.47046 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46715 * 120.00110 * 10 8 6 13 13 H 1.48499 * 109.47033 * 240.00361 * 10 8 6 14 14 C 1.40561 * 119.58227 * 359.74286 * 5 4 3 15 15 C 1.38319 * 119.67791 * 0.02562 * 14 5 4 16 16 N 1.39686 * 119.95031 * 180.02562 * 15 14 5 17 17 C 1.46901 * 111.00184 * 299.98361 * 16 15 14 18 18 C 1.46907 * 110.99706 * 63.93291 * 16 15 14 19 19 H 1.08993 * 109.47304 * 269.73046 * 1 2 3 20 20 H 1.08998 * 109.46778 * 149.72783 * 1 2 3 21 21 H 1.09002 * 109.47013 * 29.73390 * 1 2 3 22 22 H 1.08003 * 119.83525 * 359.97438 * 3 2 1 23 23 H 1.07998 * 120.05740 * 180.23027 * 4 3 2 24 24 H 0.97005 * 120.00281 * 179.97438 * 9 8 6 25 25 H 1.08002 * 120.16114 * 180.02562 * 14 5 4 26 26 H 1.08997 * 109.47422 * 59.99779 * 17 16 15 27 27 H 1.08999 * 109.47198 * 180.02562 * 17 16 15 28 28 H 1.09005 * 109.46886 * 299.99475 * 17 16 15 29 29 H 1.08997 * 109.46930 * 59.99826 * 18 16 15 30 30 H 1.09000 * 109.46721 * 179.97438 * 18 16 15 31 31 H 1.09003 * 109.47026 * 299.99632 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.2022 0.0000 4 6 3.5716 1.2152 0.0050 5 6 4.2847 0.0012 -0.0007 6 6 5.6987 0.0068 -0.0016 7 1 6.2418 -0.8408 -0.3931 8 6 6.3944 1.1103 0.5046 9 7 5.7848 1.9668 1.2832 10 14 8.1935 1.3605 0.0687 11 1 8.6450 0.2603 -0.8207 12 1 8.3573 2.6604 -0.6303 13 1 9.0083 1.3599 1.3102 14 6 3.5822 -1.2162 -0.0061 15 6 2.1990 -1.2088 -0.0061 16 7 1.4951 -2.4153 -0.0109 17 6 1.8219 -3.2108 -1.2018 18 6 1.7504 -3.1785 1.2182 19 1 -0.3633 -0.0048 1.0276 20 1 -0.3633 -0.8875 -0.5181 21 1 -0.3633 0.8924 -0.5097 22 1 1.6491 2.1340 -0.0004 23 1 4.1037 2.1550 0.0087 24 1 6.2670 2.7317 1.6345 25 1 4.1198 -2.1529 -0.0101 26 1 2.8898 -3.4292 -1.2112 27 1 1.2599 -4.1445 -1.1805 28 1 1.5580 -2.6488 -2.0978 29 1 1.4345 -2.5929 2.0816 30 1 1.1899 -4.1129 1.1886 31 1 2.8157 -3.3957 1.2964 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259301551.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:31 Heat of formation + Delta-G solvation = 17.340150 kcal Electronic energy + Delta-G solvation = -13167.800897 eV Core-core repulsion = 11027.600243 eV Total energy + Delta-G solvation = -2140.200654 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.59533 -35.68092 -33.59517 -31.06604 -28.53374 -27.22550 -27.03273 -24.20677 -23.01478 -20.26423 -19.65963 -17.19752 -15.42009 -14.84357 -14.41416 -14.34197 -14.00399 -13.14349 -12.89694 -12.43920 -12.25939 -11.89145 -11.50513 -11.42800 -11.39131 -11.19814 -11.08132 -10.77596 -10.52805 -10.17887 -9.81485 -9.49662 -9.09212 -7.74565 -7.39921 -7.14127 -6.74466 -4.33403 2.76459 2.91235 3.06947 3.12233 3.19723 3.93351 4.58580 4.68501 5.61019 5.68278 5.87945 5.94353 6.07867 6.16724 6.30447 6.33802 6.34768 6.48939 6.59421 6.78598 6.91107 7.06672 7.11852 7.27083 7.40388 7.55872 7.79534 7.97088 8.12065 8.20489 8.37657 8.66734 8.90209 8.99762 10.19754 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.042508 B = 0.009742 C = 0.008520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.536563 B = 2873.404086 C = 3285.766514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.183 4.183 3 C -0.102 4.102 4 C -0.159 4.159 5 C 0.112 3.888 6 C -0.465 4.465 7 H 0.075 0.925 8 C 0.076 3.924 9 N -0.795 5.795 10 Si 0.906 3.094 11 H -0.261 1.261 12 H -0.272 1.272 13 H -0.275 1.275 14 C -0.246 4.246 15 C 0.100 3.900 16 N -0.506 5.506 17 C 0.033 3.967 18 C 0.034 3.966 19 H 0.039 0.961 20 H 0.057 0.943 21 H 0.037 0.963 22 H 0.091 0.909 23 H 0.118 0.882 24 H 0.279 0.721 25 H 0.088 0.912 26 H 0.027 0.973 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.579 -3.855 -1.593 5.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.185 4.185 3 C -0.121 4.121 4 C -0.178 4.178 5 C 0.109 3.891 6 C -0.495 4.495 7 H 0.093 0.907 8 C -0.141 4.141 9 N -0.420 5.420 10 Si 0.730 3.270 11 H -0.185 1.185 12 H -0.197 1.197 13 H -0.200 1.200 14 C -0.268 4.268 15 C 0.007 3.993 16 N -0.226 5.226 17 C -0.115 4.115 18 C -0.113 4.113 19 H 0.058 0.942 20 H 0.076 0.924 21 H 0.056 0.944 22 H 0.109 0.891 23 H 0.136 0.864 24 H 0.090 0.910 25 H 0.106 0.894 26 H 0.045 0.955 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -4.046 -3.562 -1.464 5.586 hybrid contribution 1.824 -0.015 0.002 1.824 sum -2.222 -3.577 -1.462 4.458 Atomic orbital electron populations 1.20274 0.93295 1.00146 0.99666 1.19038 0.94132 0.91537 1.13805 1.20554 0.94612 0.95312 1.01654 1.21373 0.92308 0.98771 1.05335 1.17470 0.93212 0.90522 0.87849 1.19559 0.91437 1.02191 1.36314 0.90686 1.25879 1.00711 0.94893 0.92598 1.69836 1.38523 1.11270 1.22418 0.86308 0.82121 0.79299 0.79263 1.18482 1.19683 1.20032 1.21288 0.93076 0.97226 1.15196 1.18164 0.90222 0.88771 1.02148 1.59624 1.57140 1.03776 1.02102 1.22331 0.98818 0.96918 0.93425 1.22319 0.99143 0.97180 0.92707 0.94205 0.92383 0.94414 0.89106 0.86387 0.90979 0.89379 0.95458 0.92396 0.91775 0.91730 0.92409 0.95434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.47 9.76 36.00 0.35 -1.12 16 2 C -0.18 -4.19 5.92 -104.13 -0.62 -4.81 16 3 C -0.10 -2.45 9.66 -39.69 -0.38 -2.83 16 4 C -0.16 -4.18 8.70 -38.83 -0.34 -4.52 16 5 C 0.11 3.05 5.57 -106.85 -0.60 2.45 16 6 C -0.47 -12.54 9.05 -37.74 -0.34 -12.88 16 7 H 0.07 1.96 7.91 -52.48 -0.42 1.55 16 8 C 0.08 1.94 5.14 -17.35 -0.09 1.86 16 9 N -0.79 -20.75 10.96 55.55 0.61 -20.15 16 10 Si 0.91 18.86 29.60 -169.99 -5.03 13.83 16 11 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 12 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 13 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 14 C -0.25 -6.17 8.30 -38.68 -0.32 -6.49 16 15 C 0.10 2.29 4.71 -83.86 -0.39 1.89 16 16 N -0.51 -9.83 3.91 -186.91 -0.73 -10.56 16 17 C 0.03 0.55 9.34 60.07 0.56 1.11 16 18 C 0.03 0.59 9.38 60.07 0.56 1.15 16 19 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 20 H 0.06 1.07 7.44 -51.93 -0.39 0.68 16 21 H 0.04 0.65 8.08 -51.93 -0.42 0.23 16 22 H 0.09 1.95 8.06 -52.48 -0.42 1.53 16 23 H 0.12 3.19 6.15 -52.49 -0.32 2.87 16 24 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 25 H 0.09 2.15 7.00 -52.49 -0.37 1.78 16 26 H 0.03 0.48 7.11 -51.93 -0.37 0.11 16 27 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.06 0.82 8.12 -51.93 -0.42 0.40 16 31 H 0.03 0.49 7.33 -51.93 -0.38 0.11 16 LS Contribution 259.34 15.07 3.91 3.91 Total: -1.00 -27.73 259.34 -7.18 -34.91 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -4.33 Total: 2.24 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: -1.60 Total: -24.17 kcal Atomic # 7 Polarization: -30.59 SS G_CDS: -0.12 Total: -30.71 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -27.73 -7.18 -34.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259301551.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.246 kcal (2) G-P(sol) polarization free energy of solvation -27.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds