Wall clock time and date at job start Mon Mar 30 2020 02:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38527 * 119.78968 * 2 1 4 4 C 1.37647 * 120.32859 * 179.75930 * 3 2 1 5 5 C 1.40793 * 119.89061 * 0.51041 * 4 3 2 6 6 C 1.41403 * 120.20582 * 179.72326 * 5 4 3 7 7 H 1.08004 * 119.99622 * 204.46913 * 6 5 4 8 8 C 1.39931 * 120.00181 * 24.46039 * 6 5 4 9 9 N 1.30825 * 119.99652 * 17.88608 * 8 6 5 10 10 Si 1.86799 * 120.00153 * 197.87802 * 8 6 5 11 11 H 1.48505 * 109.47046 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46715 * 120.00110 * 10 8 6 13 13 H 1.48499 * 109.47033 * 240.00361 * 10 8 6 14 14 C 1.40561 * 119.58227 * 359.74286 * 5 4 3 15 15 C 1.38319 * 119.67791 * 0.02562 * 14 5 4 16 16 N 1.39686 * 119.95031 * 180.02562 * 15 14 5 17 17 C 1.46901 * 111.00184 * 299.98361 * 16 15 14 18 18 C 1.46907 * 110.99706 * 63.93291 * 16 15 14 19 19 H 1.08993 * 109.47304 * 269.73046 * 1 2 3 20 20 H 1.08998 * 109.46778 * 149.72783 * 1 2 3 21 21 H 1.09002 * 109.47013 * 29.73390 * 1 2 3 22 22 H 1.08003 * 119.83525 * 359.97438 * 3 2 1 23 23 H 1.07998 * 120.05740 * 180.23027 * 4 3 2 24 24 H 0.97005 * 120.00281 * 179.97438 * 9 8 6 25 25 H 1.08002 * 120.16114 * 180.02562 * 14 5 4 26 26 H 1.08997 * 109.47422 * 59.99779 * 17 16 15 27 27 H 1.08999 * 109.47198 * 180.02562 * 17 16 15 28 28 H 1.09005 * 109.46886 * 299.99475 * 17 16 15 29 29 H 1.08997 * 109.46930 * 59.99826 * 18 16 15 30 30 H 1.09000 * 109.46721 * 179.97438 * 18 16 15 31 31 H 1.09003 * 109.47026 * 299.99632 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.2022 0.0000 4 6 3.5716 1.2152 0.0050 5 6 4.2847 0.0012 -0.0007 6 6 5.6987 0.0068 -0.0016 7 1 6.2418 -0.8408 -0.3931 8 6 6.3944 1.1103 0.5046 9 7 5.7848 1.9668 1.2832 10 14 8.1935 1.3605 0.0687 11 1 8.6450 0.2603 -0.8207 12 1 8.3573 2.6604 -0.6303 13 1 9.0083 1.3599 1.3102 14 6 3.5822 -1.2162 -0.0061 15 6 2.1990 -1.2088 -0.0061 16 7 1.4951 -2.4153 -0.0109 17 6 1.8219 -3.2108 -1.2018 18 6 1.7504 -3.1785 1.2182 19 1 -0.3633 -0.0048 1.0276 20 1 -0.3633 -0.8875 -0.5181 21 1 -0.3633 0.8924 -0.5097 22 1 1.6491 2.1340 -0.0004 23 1 4.1037 2.1550 0.0087 24 1 6.2670 2.7317 1.6345 25 1 4.1198 -2.1529 -0.0101 26 1 2.8898 -3.4292 -1.2112 27 1 1.2599 -4.1445 -1.1805 28 1 1.5580 -2.6488 -2.0978 29 1 1.4345 -2.5929 2.0816 30 1 1.1899 -4.1129 1.1886 31 1 2.8157 -3.3957 1.2964 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259301551.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:30 Heat of formation + Delta-G solvation = 2.290033 kcal Electronic energy + Delta-G solvation = -13168.453519 eV Core-core repulsion = 11027.600243 eV Total energy + Delta-G solvation = -2140.853276 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.34482 -37.41028 -35.44266 -32.91083 -30.35193 -29.03813 -28.41008 -25.94455 -24.72832 -22.07335 -21.50150 -19.06312 -17.29237 -16.52820 -16.09575 -15.86093 -15.81656 -14.86350 -14.56178 -14.09047 -13.95014 -13.35413 -13.20333 -13.15857 -12.95231 -12.68840 -12.57202 -12.52766 -12.23076 -11.97574 -11.63799 -11.37166 -10.98015 -9.34551 -9.30613 -9.03928 -8.64001 -6.34534 0.94909 0.99332 1.35432 1.47715 1.50816 2.18850 2.67869 3.16644 3.65826 4.34728 4.39713 4.48343 4.58814 4.66794 4.70578 4.81664 4.94801 4.97847 5.00165 5.10035 5.14735 5.18294 5.32724 5.41061 5.54151 5.93986 6.01270 6.10767 6.20465 6.32800 6.49405 6.74392 6.92339 7.07342 8.32235 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.042508 B = 0.009742 C = 0.008520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.536563 B = 2873.404086 C = 3285.766514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.189 4.189 3 C -0.105 4.105 4 C -0.185 4.185 5 C 0.081 3.919 6 C -0.504 4.504 7 H 0.068 0.932 8 C 0.036 3.964 9 N -0.826 5.826 10 Si 0.981 3.019 11 H -0.261 1.261 12 H -0.262 1.262 13 H -0.265 1.265 14 C -0.260 4.260 15 C 0.104 3.896 16 N -0.507 5.507 17 C 0.032 3.968 18 C 0.034 3.966 19 H 0.050 0.950 20 H 0.066 0.934 21 H 0.055 0.945 22 H 0.114 0.886 23 H 0.102 0.898 24 H 0.288 0.712 25 H 0.084 0.916 26 H 0.015 0.985 27 H 0.095 0.905 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.482 -4.465 -1.800 6.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.190 4.190 3 C -0.124 4.124 4 C -0.204 4.204 5 C 0.078 3.922 6 C -0.533 4.533 7 H 0.087 0.913 8 C -0.179 4.179 9 N -0.452 5.452 10 Si 0.802 3.198 11 H -0.184 1.184 12 H -0.186 1.186 13 H -0.189 1.189 14 C -0.282 4.282 15 C 0.010 3.990 16 N -0.227 5.227 17 C -0.115 4.115 18 C -0.113 4.113 19 H 0.069 0.931 20 H 0.085 0.915 21 H 0.074 0.926 22 H 0.132 0.868 23 H 0.120 0.880 24 H 0.099 0.901 25 H 0.102 0.898 26 H 0.034 0.966 27 H 0.113 0.887 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -4.971 -4.183 -1.668 6.708 hybrid contribution 1.968 0.106 0.080 1.972 sum -3.003 -4.077 -1.588 5.307 Atomic orbital electron populations 1.20266 0.90137 1.01522 1.00732 1.19562 0.96495 0.90998 1.11994 1.20847 0.93871 0.96994 1.00674 1.21329 0.93501 0.97953 1.07647 1.17826 0.93908 0.91589 0.88843 1.19770 0.91986 1.03330 1.38250 0.91332 1.26725 1.05342 0.94012 0.91790 1.69881 1.40571 1.11832 1.22904 0.85185 0.76131 0.79331 0.79199 1.18435 1.18646 1.18943 1.21391 0.94334 0.96441 1.16028 1.18404 0.89581 0.90742 1.00248 1.59737 1.56093 1.03210 1.03708 1.22414 0.98738 0.98080 0.92249 1.22390 0.98956 0.98420 0.91544 0.93121 0.91514 0.92577 0.86839 0.88003 0.90125 0.89801 0.96640 0.88662 0.92024 0.92371 0.88553 0.96779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.45 9.76 71.24 0.69 -1.76 16 2 C -0.19 -8.38 5.92 -19.54 -0.12 -8.50 16 3 C -0.11 -5.00 9.66 22.20 0.21 -4.79 16 4 C -0.18 -10.03 8.70 22.76 0.20 -9.83 16 5 C 0.08 4.55 5.57 -21.31 -0.12 4.43 16 6 C -0.50 -28.21 9.05 23.46 0.21 -28.00 16 7 H 0.07 3.76 7.91 -2.91 -0.02 3.74 16 8 C 0.04 1.86 5.14 85.25 0.44 2.30 16 9 N -0.83 -44.17 10.96 21.82 0.24 -43.93 16 10 Si 0.98 39.16 29.60 68.60 2.03 41.19 16 11 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 12 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 13 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 14 C -0.26 -13.33 8.30 22.86 0.19 -13.14 16 15 C 0.10 4.69 4.71 38.16 0.18 4.87 16 16 N -0.51 -18.63 3.91 -745.26 -2.91 -21.55 16 17 C 0.03 1.02 9.34 127.69 1.19 2.21 16 18 C 0.03 1.10 9.38 127.69 1.20 2.30 16 19 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 20 H 0.07 2.23 7.44 -2.39 -0.02 2.21 16 21 H 0.06 1.76 8.08 -2.39 -0.02 1.74 16 22 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 23 H 0.10 5.75 6.15 -2.91 -0.02 5.73 16 24 H 0.29 13.83 8.30 -92.70 -0.77 13.06 16 25 H 0.08 4.23 7.00 -2.91 -0.02 4.21 16 26 H 0.01 0.52 7.11 -2.39 -0.02 0.50 16 27 H 0.09 2.31 8.12 -2.39 -0.02 2.29 16 28 H 0.06 1.96 8.14 -2.38 -0.02 1.95 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.10 2.39 8.12 -2.39 -0.02 2.37 16 31 H 0.01 0.48 7.33 -2.39 -0.02 0.47 16 Total: -1.00 -60.52 259.34 4.74 -55.79 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 1.10 Total: 18.41 kcal Atomic # 6 Polarization: -54.19 SS G_CDS: 4.28 Total: -49.91 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: -2.67 Total: -65.48 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Total: -60.52 4.74 -55.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259301551.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.075 kcal (2) G-P(sol) polarization free energy of solvation -60.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds