Wall clock time and date at job start Mon Mar 30 2020 02:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38258 * 120.00336 * 2 1 4 4 C 1.38216 * 120.00121 * 180.02562 * 3 2 1 5 5 C 1.38258 * 119.99771 * 359.97438 * 4 3 2 6 6 C 1.38211 * 120.00245 * 359.96258 * 5 4 3 7 7 C 1.50695 * 120.00060 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47521 * 200.00003 * 7 6 5 9 9 N 1.46908 * 109.47079 * 320.00038 * 7 6 5 10 10 C 1.52996 * 109.47310 * 79.99772 * 7 6 5 11 11 C 1.50702 * 109.47159 * 174.99934 * 10 7 6 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 7 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 7 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11 19 19 C 1.38217 * 120.00095 * 180.20485 * 2 1 3 20 20 H 1.09006 * 109.47134 * 90.00001 * 1 2 3 21 21 H 1.09003 * 109.47502 * 210.00099 * 1 2 3 22 22 H 1.09000 * 109.47007 * 330.00841 * 1 2 3 23 23 H 1.07996 * 119.99709 * 359.97438 * 3 2 1 24 24 H 1.07995 * 119.99682 * 179.97438 * 4 3 2 25 25 H 1.08004 * 119.99465 * 179.97438 * 5 4 3 26 26 H 1.00899 * 110.99551 * 296.04539 * 9 7 6 27 27 H 1.00902 * 111.00072 * 59.99841 * 9 7 6 28 28 H 1.09004 * 109.47066 * 55.00137 * 10 7 6 29 29 H 1.08994 * 109.47405 * 294.99967 * 10 7 6 30 30 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 31 31 H 1.08009 * 119.99736 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 6 3.5806 -1.1971 0.0008 7 6 4.3340 -2.5022 0.0014 8 1 3.6792 -3.2999 -0.3491 9 7 5.4972 -2.3965 -0.8897 10 6 4.8068 -2.8175 1.4219 11 6 5.4523 -4.1791 1.4458 12 1 5.5191 -4.7611 0.5385 13 6 5.9633 -4.6791 2.6248 14 7 5.8823 -3.9702 3.7296 15 14 6.7703 -6.3635 2.6528 16 1 8.2219 -6.2216 2.3735 17 1 6.5816 -6.9806 3.9903 18 1 6.1491 -7.2275 1.6170 19 6 2.1980 -1.1970 -0.0043 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8901 0.5137 23 1 1.6583 2.1326 -0.0004 24 1 4.1204 2.1325 -0.0010 25 1 5.3517 -0.0001 -0.0014 26 1 5.2084 -2.2525 -1.8457 27 1 6.1201 -1.6631 -0.5857 28 1 3.9529 -2.8083 2.0994 29 1 5.5304 -2.0667 1.7391 30 1 6.2414 -4.3222 4.5591 31 1 1.6580 -2.1323 -0.0080 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259506786.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:05 Heat of formation + Delta-G solvation = -14.148570 kcal Electronic energy + Delta-G solvation = -12771.246424 eV Core-core repulsion = 10629.680317 eV Total energy + Delta-G solvation = -2141.566107 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.51942 -37.10060 -34.63031 -33.20985 -31.34765 -30.19418 -27.66155 -26.21491 -23.53122 -22.89864 -20.57131 -18.54177 -17.48531 -16.97282 -16.45115 -15.86666 -15.82214 -14.93765 -14.57678 -14.31961 -14.11231 -13.93150 -13.23303 -13.06248 -12.96542 -12.78031 -12.44302 -12.29871 -12.13551 -11.78679 -11.44005 -11.23598 -10.53594 -9.67432 -9.58464 -9.30317 -8.13531 -6.20714 0.46660 0.50420 1.41464 1.43236 1.54361 2.45570 2.86218 3.19122 3.88360 3.91124 3.99114 4.08353 4.26488 4.48784 4.53337 4.64171 4.82194 4.84566 4.91895 5.01765 5.19205 5.31653 5.42639 5.55422 5.57690 5.69691 5.77725 5.85939 6.16461 6.27663 6.48465 6.79279 6.93433 7.46081 8.98399 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.048570 B = 0.007364 C = 0.007116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.349805 B = 3801.527480 C = 3933.862640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.092 4.092 3 C -0.135 4.135 4 C -0.117 4.117 5 C -0.142 4.142 6 C -0.116 4.116 7 C 0.144 3.856 8 H 0.068 0.932 9 N -0.827 5.827 10 C 0.048 3.952 11 C -0.509 4.509 12 H 0.061 0.939 13 C -0.007 4.007 14 N -0.940 5.940 15 Si 0.965 3.035 16 H -0.275 1.275 17 H -0.284 1.284 18 H -0.265 1.265 19 C -0.136 4.136 20 H 0.083 0.917 21 H 0.064 0.936 22 H 0.081 0.919 23 H 0.148 0.852 24 H 0.144 0.856 25 H 0.116 0.884 26 H 0.340 0.660 27 H 0.338 0.662 28 H -0.013 1.013 29 H -0.010 1.010 30 H 0.260 0.740 31 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.056 9.645 -8.892 15.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.092 4.092 3 C -0.152 4.152 4 C -0.134 4.134 5 C -0.160 4.160 6 C -0.118 4.118 7 C 0.032 3.968 8 H 0.086 0.914 9 N -0.356 5.356 10 C 0.010 3.990 11 C -0.548 4.548 12 H 0.079 0.921 13 C -0.203 4.203 14 N -0.581 5.581 15 Si 0.790 3.210 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.190 1.190 19 C -0.155 4.155 20 H 0.101 0.899 21 H 0.083 0.917 22 H 0.100 0.900 23 H 0.166 0.834 24 H 0.162 0.838 25 H 0.134 0.866 26 H 0.153 0.847 27 H 0.151 0.849 28 H 0.006 0.994 29 H 0.008 0.992 30 H 0.069 0.931 31 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.835 8.866 -8.500 14.568 hybrid contribution 0.327 0.040 0.328 0.465 sum -7.507 8.906 -8.172 14.229 Atomic orbital electron populations 1.20822 0.89107 1.03474 1.03222 1.20286 0.97661 0.92688 0.98568 1.21330 0.94163 0.98223 1.01533 1.21393 0.94956 0.97908 0.99191 1.21069 0.99998 0.92604 1.02336 1.21138 0.95148 0.96910 0.98586 1.20343 0.90242 0.91559 0.94623 0.91401 1.58756 1.17434 1.54376 1.05080 1.18904 0.94081 0.95553 0.90420 1.21519 1.36300 1.02484 0.94463 0.92115 1.25952 0.97237 1.01746 0.95374 1.70116 1.48193 1.39689 1.00144 0.85452 0.78792 0.79519 0.77253 1.20097 1.20988 1.18952 1.21123 0.93492 0.98567 1.02295 0.89868 0.91669 0.90007 0.83399 0.83793 0.86600 0.84729 0.84861 0.99423 0.99213 0.93110 0.86379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.16 10.01 71.23 0.71 -1.45 16 2 C -0.09 -2.51 5.88 -19.87 -0.12 -2.63 16 3 C -0.13 -3.38 9.70 22.27 0.22 -3.16 16 4 C -0.12 -3.18 10.05 22.27 0.22 -2.95 16 5 C -0.14 -4.70 9.29 22.27 0.21 -4.50 16 6 C -0.12 -4.28 4.94 -19.87 -0.10 -4.38 16 7 C 0.14 6.16 2.93 44.16 0.13 6.28 16 8 H 0.07 2.96 8.00 -2.39 -0.02 2.94 16 9 N -0.83 -31.57 8.77 -171.80 -1.51 -33.07 16 10 C 0.05 2.60 4.60 29.85 0.14 2.74 16 11 C -0.51 -29.88 8.84 25.60 0.23 -29.65 16 12 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 13 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 14 N -0.94 -58.94 13.29 21.45 0.28 -58.65 16 15 Si 0.96 46.17 29.54 68.60 2.03 48.20 16 16 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 17 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 19 C -0.14 -4.55 9.33 22.27 0.21 -4.34 16 20 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 21 H 0.06 1.30 8.09 -2.39 -0.02 1.28 16 22 H 0.08 1.31 8.09 -2.39 -0.02 1.29 16 23 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 24 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 25 H 0.12 3.75 6.66 -2.91 -0.02 3.73 16 26 H 0.34 10.77 9.06 -89.69 -0.81 9.96 16 27 H 0.34 12.38 7.35 -89.69 -0.66 11.72 16 28 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 29 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 30 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 31 H 0.12 3.82 8.04 -2.91 -0.02 3.80 16 Total: -1.00 -67.97 265.83 2.76 -65.21 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: -0.35 Total: 22.31 kcal Atomic # 6 Polarization: -46.30 SS G_CDS: 2.31 Total: -43.99 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -1.22 Total: -91.73 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -67.97 2.76 -65.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259506786.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.061 kcal (2) G-P(sol) polarization free energy of solvation -67.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds