Wall clock time and date at job start Mon Mar 30 2020 02:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46905 * 111.00089 * 2 1 4 4 H 1.08998 * 109.47071 * 184.71033 * 3 2 1 5 5 C 1.50704 * 109.46703 * 64.71097 * 3 2 1 6 6 H 1.07998 * 119.99775 * 234.76671 * 5 3 2 7 7 C 1.37872 * 120.00084 * 54.77701 * 5 3 2 8 8 N 1.31514 * 119.99839 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 120.00217 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.46924 * 270.00046 * 9 7 5 11 11 H 1.48502 * 109.47195 * 29.99949 * 9 7 5 12 12 H 1.48500 * 109.47414 * 150.00125 * 9 7 5 13 13 C 1.50697 * 109.46941 * 304.70968 * 3 2 1 14 14 C 1.38262 * 119.99615 * 102.05585 * 13 3 2 15 15 C 1.38220 * 119.99882 * 179.80676 * 14 13 3 16 16 C 1.38259 * 119.99536 * 0.42165 * 15 14 13 17 17 C 1.38214 * 120.00445 * 359.80894 * 16 15 14 18 18 C 1.38205 * 120.00499 * 282.32848 * 13 3 2 19 19 C 1.50705 * 119.99811 * 359.97438 * 18 13 3 20 20 H 1.09005 * 109.46975 * 295.20010 * 1 2 3 21 21 H 1.09000 * 109.47525 * 55.20442 * 1 2 3 22 22 H 1.09006 * 109.47323 * 175.20354 * 1 2 3 23 23 H 1.00905 * 111.00169 * 236.04660 * 2 1 3 24 24 H 0.96999 * 120.00074 * 179.97438 * 8 7 5 25 25 H 1.08004 * 120.00158 * 359.97438 * 14 13 3 26 26 H 1.07998 * 120.00042 * 180.20709 * 15 14 13 27 27 H 1.08008 * 119.99542 * 179.78685 * 16 15 14 28 28 H 1.07993 * 120.00231 * 179.97438 * 17 16 15 29 29 H 1.09001 * 109.46843 * 90.00441 * 19 18 13 30 30 H 1.08991 * 109.47225 * 209.99907 * 19 18 13 31 31 H 1.09002 * 109.47348 * 330.00638 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 3.0817 1.3436 -0.0844 5 6 1.6087 2.0579 1.2847 6 1 1.0794 2.9988 1.2561 7 6 1.9310 1.4848 2.4966 8 7 1.5940 2.0841 3.6177 9 14 2.8462 -0.1429 2.5462 10 1 1.8683 -1.2604 2.5593 11 1 3.7147 -0.2591 1.3472 12 1 3.6831 -0.2031 3.7714 13 6 1.4201 2.1303 -1.1680 14 6 0.3864 3.0265 -0.9684 15 6 -0.1387 3.7255 -2.0390 16 6 0.3641 3.5220 -3.3107 17 6 1.3943 2.6226 -3.5110 18 6 1.9220 1.9263 -2.4394 19 6 3.0450 0.9454 -2.6578 20 1 -0.3633 0.4376 0.9299 21 1 -0.3634 0.5864 -0.8439 22 1 -0.3634 -1.0241 -0.0859 23 1 1.8305 -0.5261 -0.7814 24 1 1.8203 1.6807 4.4703 25 1 -0.0091 3.1824 0.0245 26 1 -0.9439 4.4280 -1.8826 27 1 -0.0485 4.0657 -4.1479 28 1 1.7867 2.4634 -4.5044 29 1 2.6305 -0.0422 -2.8605 30 1 3.6486 1.2671 -3.5063 31 1 3.6680 0.9015 -1.7644 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259512107.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:37 Heat of formation + Delta-G solvation = 26.148466 kcal Electronic energy + Delta-G solvation = -13532.592545 eV Core-core repulsion = 11392.773849 eV Total energy + Delta-G solvation = -2139.818697 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.23311 -35.60202 -32.39911 -31.87723 -30.38785 -27.32820 -26.27462 -24.42820 -22.39486 -21.01377 -19.38207 -16.63753 -15.90626 -15.33385 -14.56752 -14.41567 -13.94460 -13.57707 -13.13093 -12.68984 -12.56190 -12.24257 -11.87591 -11.61308 -11.44926 -10.75928 -10.69730 -10.59345 -10.48332 -10.07112 -9.68233 -9.02542 -8.49469 -8.16608 -8.03414 -7.39189 -5.98427 -4.07626 1.91691 2.01319 3.60325 3.64384 3.78207 4.34798 4.68926 5.22880 5.29596 5.36877 5.52336 5.60905 5.69183 5.81810 5.91968 6.06839 6.12074 6.26333 6.35841 6.42358 6.64249 6.66840 6.81558 6.99671 7.04188 7.14216 7.41704 7.57989 7.71554 7.92173 8.32928 8.63033 8.98156 9.65302 11.09901 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.040167 B = 0.012456 C = 0.010967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.923616 B = 2247.348544 C = 2552.540711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.679 5.679 3 C 0.210 3.790 4 H 0.051 0.949 5 C -0.522 4.522 6 H 0.080 0.920 7 C 0.081 3.919 8 N -0.901 5.901 9 Si 0.941 3.059 10 H -0.283 1.283 11 H -0.275 1.275 12 H -0.324 1.324 13 C -0.075 4.075 14 C -0.090 4.090 15 C -0.138 4.138 16 C -0.136 4.136 17 C -0.132 4.132 18 C -0.099 4.099 19 C -0.116 4.116 20 H 0.076 0.924 21 H 0.016 0.984 22 H 0.040 0.960 23 H 0.311 0.689 24 H 0.263 0.737 25 H 0.139 0.861 26 H 0.112 0.888 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.727 -1.570 -11.860 11.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.308 5.308 3 C 0.104 3.896 4 H 0.069 0.931 5 C -0.560 4.560 6 H 0.098 0.902 7 C -0.123 4.123 8 N -0.538 5.538 9 Si 0.775 3.225 10 H -0.210 1.210 11 H -0.201 1.201 12 H -0.255 1.255 13 C -0.077 4.077 14 C -0.109 4.109 15 C -0.156 4.156 16 C -0.154 4.154 17 C -0.150 4.150 18 C -0.100 4.100 19 C -0.173 4.173 20 H 0.095 0.905 21 H 0.035 0.965 22 H 0.059 0.941 23 H 0.128 0.872 24 H 0.072 0.928 25 H 0.157 0.843 26 H 0.130 0.870 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.682 -1.663 -10.980 11.126 hybrid contribution 0.134 -0.462 -0.865 0.990 sum -0.548 -2.125 -11.845 12.047 Atomic orbital electron populations 1.21995 0.88715 0.98700 1.01612 1.60929 1.08039 1.15886 1.45976 1.18802 0.95079 0.83839 0.91908 0.93111 1.20951 1.39443 1.07562 0.88059 0.90230 1.25021 0.94436 0.97775 0.95081 1.69963 1.46628 1.39576 0.97657 0.85764 0.78868 0.83457 0.74423 1.20956 1.20118 1.25482 1.20890 0.95368 0.96567 0.94914 1.21562 0.95526 0.94405 0.99379 1.21180 1.00633 1.00622 0.93179 1.20934 0.98087 0.99564 0.96826 1.20835 0.98107 0.98314 0.97756 1.19860 0.98069 0.98643 0.93380 1.20825 0.96519 0.97497 1.02421 0.90498 0.96522 0.94138 0.87243 0.92809 0.84303 0.87034 0.87275 0.87256 0.91849 0.92325 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 9.98 60.06 0.60 1.39 16 2 N -0.68 -14.51 3.78 -116.49 -0.44 -14.95 16 3 C 0.21 4.82 1.51 -70.01 -0.11 4.71 16 4 H 0.05 1.21 5.95 -51.93 -0.31 0.90 16 5 C -0.52 -14.17 7.58 -34.44 -0.26 -14.44 16 6 H 0.08 2.30 5.78 -52.49 -0.30 2.00 16 7 C 0.08 2.30 5.47 -17.82 -0.10 2.21 16 8 N -0.90 -27.35 13.96 55.43 0.77 -26.57 16 9 Si 0.94 23.93 25.74 -169.99 -4.38 19.55 16 10 H -0.28 -7.23 7.11 56.52 0.40 -6.82 16 11 H -0.28 -6.72 6.69 56.52 0.38 -6.34 16 12 H -0.32 -8.41 7.11 56.52 0.40 -8.01 16 13 C -0.08 -1.54 3.95 -104.63 -0.41 -1.96 16 14 C -0.09 -1.82 8.05 -39.58 -0.32 -2.14 16 15 C -0.14 -2.37 10.05 -39.58 -0.40 -2.77 16 16 C -0.14 -2.13 10.05 -39.58 -0.40 -2.53 16 17 C -0.13 -2.11 9.70 -39.58 -0.38 -2.49 16 18 C -0.10 -1.75 5.88 -104.62 -0.62 -2.37 16 19 C -0.12 -1.75 8.84 36.01 0.32 -1.43 16 20 H 0.08 1.75 7.40 -51.93 -0.38 1.37 16 21 H 0.02 0.32 6.22 -51.93 -0.32 0.00 16 22 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.31 5.85 7.79 -39.29 -0.31 5.54 16 24 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.14 3.06 5.81 -52.48 -0.31 2.76 16 26 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 27 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 28 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 29 H 0.06 0.87 7.87 -51.93 -0.41 0.46 16 30 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 31 H 0.07 1.19 6.18 -51.93 -0.32 0.87 16 LS Contribution 247.14 15.07 3.72 3.72 Total: -1.00 -29.92 247.14 -6.32 -36.24 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -3.93 Total: 3.84 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: -2.07 Total: -21.82 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 0.33 Total: -41.53 kcal Atomic # 14 Polarization: 23.93 SS G_CDS: -4.38 Total: 19.55 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -29.92 -6.32 -36.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259512107.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.389 kcal (2) G-P(sol) polarization free energy of solvation -29.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds