Wall clock time and date at job start Mon Mar 30 2020 02:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46905 * 111.00089 * 2 1 4 4 H 1.08998 * 109.47071 * 184.71033 * 3 2 1 5 5 C 1.50704 * 109.46703 * 64.71097 * 3 2 1 6 6 H 1.07998 * 119.99775 * 234.76671 * 5 3 2 7 7 C 1.37872 * 120.00084 * 54.77701 * 5 3 2 8 8 N 1.31514 * 119.99839 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 120.00217 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.46924 * 270.00046 * 9 7 5 11 11 H 1.48502 * 109.47195 * 29.99949 * 9 7 5 12 12 H 1.48500 * 109.47414 * 150.00125 * 9 7 5 13 13 C 1.50697 * 109.46941 * 304.70968 * 3 2 1 14 14 C 1.38262 * 119.99615 * 102.05585 * 13 3 2 15 15 C 1.38220 * 119.99882 * 179.80676 * 14 13 3 16 16 C 1.38259 * 119.99536 * 0.42165 * 15 14 13 17 17 C 1.38214 * 120.00445 * 359.80894 * 16 15 14 18 18 C 1.38205 * 120.00499 * 282.32848 * 13 3 2 19 19 C 1.50705 * 119.99811 * 359.97438 * 18 13 3 20 20 H 1.09005 * 109.46975 * 295.20010 * 1 2 3 21 21 H 1.09000 * 109.47525 * 55.20442 * 1 2 3 22 22 H 1.09006 * 109.47323 * 175.20354 * 1 2 3 23 23 H 1.00905 * 111.00169 * 236.04660 * 2 1 3 24 24 H 0.96999 * 120.00074 * 179.97438 * 8 7 5 25 25 H 1.08004 * 120.00158 * 359.97438 * 14 13 3 26 26 H 1.07998 * 120.00042 * 180.20709 * 15 14 13 27 27 H 1.08008 * 119.99542 * 179.78685 * 16 15 14 28 28 H 1.07993 * 120.00231 * 179.97438 * 17 16 15 29 29 H 1.09001 * 109.46843 * 90.00441 * 19 18 13 30 30 H 1.08991 * 109.47225 * 209.99907 * 19 18 13 31 31 H 1.09002 * 109.47348 * 330.00638 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 3.0817 1.3436 -0.0844 5 6 1.6087 2.0579 1.2847 6 1 1.0794 2.9988 1.2561 7 6 1.9310 1.4848 2.4966 8 7 1.5940 2.0841 3.6177 9 14 2.8462 -0.1429 2.5462 10 1 1.8683 -1.2604 2.5593 11 1 3.7147 -0.2591 1.3472 12 1 3.6831 -0.2031 3.7714 13 6 1.4201 2.1303 -1.1680 14 6 0.3864 3.0265 -0.9684 15 6 -0.1387 3.7255 -2.0390 16 6 0.3641 3.5220 -3.3107 17 6 1.3943 2.6226 -3.5110 18 6 1.9220 1.9263 -2.4394 19 6 3.0450 0.9454 -2.6578 20 1 -0.3633 0.4376 0.9299 21 1 -0.3634 0.5864 -0.8439 22 1 -0.3634 -1.0241 -0.0859 23 1 1.8305 -0.5261 -0.7814 24 1 1.8203 1.6807 4.4703 25 1 -0.0091 3.1824 0.0245 26 1 -0.9439 4.4280 -1.8826 27 1 -0.0485 4.0657 -4.1479 28 1 1.7867 2.4634 -4.5044 29 1 2.6305 -0.0422 -2.8605 30 1 3.6486 1.2671 -3.5063 31 1 3.6680 0.9015 -1.7644 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259512107.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:37 Heat of formation + Delta-G solvation = 6.809114 kcal Electronic energy + Delta-G solvation = -13533.431163 eV Core-core repulsion = 11392.773849 eV Total energy + Delta-G solvation = -2140.657314 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.67959 -37.25392 -34.25232 -33.47288 -31.89638 -29.06509 -27.60409 -26.29682 -23.94731 -22.51131 -20.96516 -18.62992 -17.42690 -16.98627 -16.32920 -15.93871 -15.43599 -15.14141 -14.81687 -14.29285 -14.04406 -13.84750 -13.34287 -13.08981 -12.77474 -12.56835 -12.43470 -12.29741 -12.09127 -11.84308 -11.48445 -11.02029 -10.68499 -9.54770 -9.43946 -9.07523 -8.19435 -6.30201 0.56366 0.63340 1.52964 1.59766 1.74072 2.57376 2.94829 3.17413 3.80271 4.08165 4.13919 4.23991 4.33624 4.51767 4.61593 4.71613 4.78982 4.83428 4.92939 5.02559 5.11382 5.26155 5.32323 5.37306 5.59840 5.67973 5.76222 5.99375 6.02345 6.26827 6.46654 6.70033 6.95653 7.45368 8.92386 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.040167 B = 0.012456 C = 0.010967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.923616 B = 2247.348544 C = 2552.540711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.686 5.686 3 C 0.219 3.781 4 H 0.046 0.954 5 C -0.515 4.515 6 H 0.045 0.955 7 C 0.025 3.975 8 N -0.951 5.951 9 Si 0.999 3.001 10 H -0.282 1.282 11 H -0.256 1.256 12 H -0.333 1.333 13 C -0.103 4.103 14 C -0.116 4.116 15 C -0.143 4.143 16 C -0.126 4.126 17 C -0.127 4.127 18 C -0.102 4.102 19 C -0.115 4.115 20 H 0.039 0.961 21 H 0.022 0.978 22 H 0.070 0.930 23 H 0.333 0.667 24 H 0.262 0.738 25 H 0.101 0.899 26 H 0.129 0.871 27 H 0.147 0.853 28 H 0.147 0.853 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.158 -2.663 -15.369 15.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.317 5.317 3 C 0.111 3.889 4 H 0.064 0.936 5 C -0.553 4.553 6 H 0.064 0.936 7 C -0.173 4.173 8 N -0.591 5.591 9 Si 0.831 3.169 10 H -0.208 1.208 11 H -0.180 1.180 12 H -0.265 1.265 13 C -0.105 4.105 14 C -0.135 4.135 15 C -0.161 4.161 16 C -0.144 4.144 17 C -0.145 4.145 18 C -0.103 4.103 19 C -0.171 4.171 20 H 0.058 0.942 21 H 0.040 0.960 22 H 0.088 0.912 23 H 0.151 0.849 24 H 0.070 0.930 25 H 0.119 0.881 26 H 0.147 0.853 27 H 0.165 0.835 28 H 0.165 0.835 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.112 -2.760 -14.525 14.786 hybrid contribution -0.112 -0.019 0.116 0.163 sum -0.225 -2.779 -14.409 14.676 Atomic orbital electron populations 1.21878 0.88108 1.00210 0.99898 1.60645 1.08662 1.15144 1.47269 1.18475 0.94757 0.84748 0.90871 0.93626 1.21260 1.37397 1.06508 0.90173 0.93648 1.25819 0.95655 1.00983 0.94820 1.70093 1.49201 1.41543 0.98294 0.84824 0.77880 0.79614 0.74612 1.20797 1.18005 1.26475 1.20663 0.96593 0.97751 0.95454 1.21355 0.96906 0.96432 0.98824 1.21381 1.01053 1.00419 0.93228 1.21376 0.97242 0.98875 0.96898 1.21276 0.97389 0.96991 0.98812 1.20136 0.98495 0.99181 0.92463 1.20870 0.95711 0.97774 1.02795 0.94174 0.95979 0.91179 0.84886 0.92998 0.88072 0.85285 0.83486 0.83505 0.90150 0.89565 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.93 9.98 127.69 1.27 3.20 16 2 N -0.69 -28.41 3.78 -522.48 -1.97 -30.38 16 3 C 0.22 10.02 1.51 43.42 0.07 10.09 16 4 H 0.05 2.14 5.95 -2.39 -0.01 2.13 16 5 C -0.52 -29.16 7.58 25.60 0.19 -28.96 16 6 H 0.05 2.83 5.78 -2.91 -0.02 2.81 16 7 C 0.03 1.50 5.47 84.65 0.46 1.96 16 8 N -0.95 -60.48 13.96 21.45 0.30 -60.18 16 9 Si 1.00 49.89 25.74 68.60 1.77 51.66 16 10 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 11 H -0.26 -11.77 6.69 99.48 0.67 -11.11 16 12 H -0.33 -17.01 7.11 99.48 0.71 -16.30 16 13 C -0.10 -4.15 3.95 -19.87 -0.08 -4.23 16 14 C -0.12 -4.80 8.05 22.27 0.18 -4.62 16 15 C -0.14 -4.70 10.05 22.27 0.22 -4.48 16 16 C -0.13 -3.44 10.05 22.27 0.22 -3.22 16 17 C -0.13 -3.46 9.70 22.27 0.22 -3.24 16 18 C -0.10 -3.31 5.88 -19.87 -0.12 -3.43 16 19 C -0.12 -3.02 8.84 71.24 0.63 -2.39 16 20 H 0.04 1.87 7.40 -2.38 -0.02 1.85 16 21 H 0.02 0.85 6.22 -2.39 -0.01 0.83 16 22 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 23 H 0.33 11.56 7.79 -89.69 -0.70 10.86 16 24 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 25 H 0.10 4.84 5.81 -2.91 -0.02 4.82 16 26 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16 27 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 28 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 29 H 0.08 1.84 7.87 -2.39 -0.02 1.82 16 30 H 0.09 1.78 8.08 -2.39 -0.02 1.77 16 31 H 0.06 1.69 6.18 -2.39 -0.01 1.68 16 Total: -1.00 -67.17 247.14 3.75 -63.41 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 0.39 Total: 14.80 kcal Atomic # 6 Polarization: -42.59 SS G_CDS: 3.27 Total: -39.31 kcal Atomic # 7 Polarization: -88.89 SS G_CDS: -1.67 Total: -90.56 kcal Atomic # 14 Polarization: 49.89 SS G_CDS: 1.77 Total: 51.66 kcal Total: -67.17 3.75 -63.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259512107.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.223 kcal (2) G-P(sol) polarization free energy of solvation -67.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds