Wall clock time and date at job start Mon Mar 30 2020 02:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 110.99990 * 2 1 4 4 H 1.08995 * 109.47138 * 184.38967 * 3 2 1 5 5 C 1.50699 * 109.47032 * 304.38763 * 3 2 1 6 6 H 1.07999 * 120.00517 * 116.21298 * 5 3 2 7 7 C 1.37884 * 119.99998 * 296.21546 * 5 3 2 8 8 N 1.31513 * 119.99615 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00197 * 179.72325 * 7 5 3 10 10 H 1.48493 * 109.47448 * 270.27303 * 9 7 5 11 11 H 1.48500 * 109.47156 * 30.27378 * 9 7 5 12 12 H 1.48500 * 109.47367 * 150.27042 * 9 7 5 13 13 C 1.50700 * 109.47241 * 64.38071 * 3 2 1 14 14 C 1.38251 * 120.00647 * 260.54534 * 13 3 2 15 15 C 1.38210 * 120.00490 * 180.02562 * 14 13 3 16 16 C 1.38263 * 119.99835 * 359.96888 * 15 14 13 17 17 C 1.38216 * 119.99893 * 359.96341 * 16 15 14 18 18 C 1.38222 * 119.99668 * 80.26841 * 13 3 2 19 19 C 1.50701 * 119.99810 * 0.02562 * 18 13 3 20 20 H 1.09001 * 109.47352 * 304.64694 * 1 2 3 21 21 H 1.08999 * 109.47423 * 64.64603 * 1 2 3 22 22 H 1.09002 * 109.47178 * 184.64766 * 1 2 3 23 23 H 1.00898 * 110.99692 * 123.94601 * 2 1 3 24 24 H 0.97000 * 120.00108 * 359.73428 * 8 7 5 25 25 H 1.07999 * 119.99491 * 359.97438 * 14 13 3 26 26 H 1.07995 * 120.00298 * 179.97438 * 15 14 13 27 27 H 1.07996 * 120.00037 * 179.97438 * 16 15 14 28 28 H 1.08002 * 119.99904 * 180.02562 * 17 16 15 29 29 H 1.09003 * 109.47707 * 84.47661 * 19 18 13 30 30 H 1.08999 * 109.47046 * 204.47517 * 19 18 13 31 31 H 1.09003 * 109.47232 * 324.47677 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 3.0822 1.3435 -0.0787 5 6 1.4263 2.1280 -1.1725 6 1 0.7881 2.9830 -1.0052 7 6 1.7203 1.7286 -2.4590 8 7 2.4979 0.6877 -2.6628 9 14 1.0086 2.6615 -3.9124 10 1 -0.3008 2.0701 -4.2871 11 1 0.8198 4.0869 -3.5411 12 1 1.9412 2.5695 -5.0644 13 6 1.6019 2.0606 1.2811 14 6 0.5202 2.9214 1.2991 15 6 0.1596 3.5538 2.4740 16 6 0.8805 3.3252 3.6315 17 6 1.9611 2.4636 3.6139 18 6 2.3191 1.8277 2.4396 19 6 3.4948 0.8851 2.4212 20 1 -0.3634 0.5842 0.8454 21 1 -0.3634 0.4400 -0.9287 22 1 -0.3634 -1.0243 0.0833 23 1 1.8305 -0.5260 0.7814 24 1 2.8676 0.2033 -1.9081 25 1 -0.0426 3.1002 0.3949 26 1 -0.6851 4.2264 2.4879 27 1 0.5990 3.8196 4.5494 28 1 2.5239 2.2847 4.5181 29 1 4.3852 1.4211 2.0924 30 1 3.6586 0.4891 3.4234 31 1 3.2910 0.0634 1.7346 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259512109.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:39 Heat of formation + Delta-G solvation = 21.088466 kcal Electronic energy + Delta-G solvation = -13489.449554 eV Core-core repulsion = 11349.411440 eV Total energy + Delta-G solvation = -2140.038115 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.15302 -35.55447 -32.35940 -31.67660 -30.31160 -26.81931 -25.86012 -24.46362 -22.18326 -20.98544 -19.71063 -16.64928 -15.90857 -15.21646 -14.50047 -13.94538 -13.71788 -13.66460 -13.27175 -12.72487 -12.50365 -11.97897 -11.69534 -11.43619 -11.26316 -10.89603 -10.70914 -10.50599 -10.39997 -10.10073 -9.98375 -8.50854 -8.28919 -8.16464 -7.96379 -7.19456 -6.19402 -3.98690 1.93785 2.03788 3.46767 3.49656 3.64652 4.37185 4.58939 5.31616 5.40126 5.41157 5.55776 5.66642 5.80187 5.85856 6.03707 6.09454 6.20688 6.35866 6.43071 6.53204 6.68681 6.73644 6.94605 7.01930 7.14098 7.20082 7.52116 7.64594 7.95051 8.26935 8.57229 8.74827 9.05707 9.81808 11.20654 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.037537 B = 0.011554 C = 0.010290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.756447 B = 2422.828237 C = 2720.365027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.671 5.671 3 C 0.232 3.768 4 H 0.043 0.957 5 C -0.609 4.609 6 H 0.054 0.946 7 C 0.036 3.964 8 N -0.891 5.891 9 Si 1.062 2.938 10 H -0.290 1.290 11 H -0.291 1.291 12 H -0.285 1.285 13 C -0.076 4.076 14 C -0.095 4.095 15 C -0.139 4.139 16 C -0.139 4.139 17 C -0.131 4.131 18 C -0.100 4.100 19 C -0.112 4.112 20 H 0.005 0.995 21 H 0.073 0.927 22 H 0.034 0.966 23 H 0.300 0.700 24 H 0.287 0.713 25 H 0.134 0.866 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.068 2.035 9.271 9.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.299 5.299 3 C 0.125 3.875 4 H 0.060 0.940 5 C -0.647 4.647 6 H 0.072 0.928 7 C -0.173 4.173 8 N -0.525 5.525 9 Si 0.892 3.108 10 H -0.216 1.216 11 H -0.217 1.217 12 H -0.211 1.211 13 C -0.078 4.078 14 C -0.114 4.114 15 C -0.157 4.157 16 C -0.157 4.157 17 C -0.150 4.150 18 C -0.100 4.100 19 C -0.169 4.169 20 H 0.024 0.976 21 H 0.091 0.909 22 H 0.052 0.948 23 H 0.117 0.883 24 H 0.099 0.901 25 H 0.151 0.849 26 H 0.128 0.872 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.039 1.964 6.906 7.464 hybrid contribution -0.269 0.353 2.735 2.771 sum -2.308 2.316 9.641 10.181 Atomic orbital electron populations 1.21871 0.89526 0.97849 1.00824 1.61239 1.07223 1.15693 1.45745 1.18423 0.95838 0.84349 0.88844 0.93959 1.21862 1.35870 1.15423 0.91593 0.92767 1.25582 0.95328 0.96651 0.99743 1.70546 1.28240 1.16924 1.36816 0.83658 0.76166 0.75132 0.75894 1.21638 1.21697 1.21120 1.21175 0.93971 0.95961 0.96708 1.21472 0.97075 0.95263 0.97563 1.21155 1.00162 1.00908 0.93523 1.20907 0.96992 1.00030 0.97776 1.20863 0.98090 0.98807 0.97194 1.19919 0.97710 0.98895 0.93488 1.20795 0.96075 0.98446 1.01585 0.97614 0.90853 0.94763 0.88307 0.90105 0.84869 0.87184 0.87309 0.87262 0.91546 0.92563 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.07 10.00 60.06 0.60 1.67 16 2 N -0.67 -15.45 5.70 -116.49 -0.66 -16.11 16 3 C 0.23 5.63 1.46 -70.01 -0.10 5.53 16 4 H 0.04 1.12 7.07 -51.93 -0.37 0.75 16 5 C -0.61 -16.37 6.59 -34.44 -0.23 -16.59 16 6 H 0.05 1.45 5.40 -52.49 -0.28 1.17 16 7 C 0.04 1.02 5.41 -17.82 -0.10 0.92 16 8 N -0.89 -26.43 13.54 55.43 0.75 -25.68 16 9 Si 1.06 24.94 29.90 -169.99 -5.08 19.85 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 C -0.08 -1.64 4.38 -104.62 -0.46 -2.09 16 14 C -0.10 -1.97 7.90 -39.59 -0.31 -2.29 16 15 C -0.14 -2.46 10.05 -39.58 -0.40 -2.86 16 16 C -0.14 -2.27 10.05 -39.58 -0.40 -2.67 16 17 C -0.13 -2.21 9.68 -39.58 -0.38 -2.60 16 18 C -0.10 -1.88 5.88 -104.62 -0.62 -2.50 16 19 C -0.11 -1.85 9.12 36.01 0.33 -1.52 16 20 H 0.01 0.12 6.30 -51.93 -0.33 -0.21 16 21 H 0.07 1.77 7.15 -51.93 -0.37 1.39 16 22 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.30 6.24 6.98 -39.29 -0.27 5.96 16 24 H 0.29 8.51 6.50 -40.82 -0.27 8.25 16 25 H 0.13 2.90 5.80 -52.49 -0.30 2.60 16 26 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 27 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 0.77 8.05 -51.93 -0.42 0.35 16 31 H 0.07 1.22 5.43 -51.93 -0.28 0.94 16 LS Contribution 250.11 15.07 3.77 3.77 Total: -1.00 -29.29 250.11 -7.09 -36.38 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -3.80 Total: 6.78 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: -2.06 Total: -24.99 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 0.09 Total: -41.79 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.08 Total: 19.85 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -29.29 -7.09 -36.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259512109.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.467 kcal (2) G-P(sol) polarization free energy of solvation -29.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds