Wall clock time and date at job start Mon Mar 30 2020 02:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 110.99990 * 2 1 4 4 H 1.08995 * 109.47138 * 184.38967 * 3 2 1 5 5 C 1.50699 * 109.47032 * 304.38763 * 3 2 1 6 6 H 1.07999 * 120.00517 * 116.21298 * 5 3 2 7 7 C 1.37884 * 119.99998 * 296.21546 * 5 3 2 8 8 N 1.31513 * 119.99615 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00197 * 179.72325 * 7 5 3 10 10 H 1.48493 * 109.47448 * 270.27303 * 9 7 5 11 11 H 1.48500 * 109.47156 * 30.27378 * 9 7 5 12 12 H 1.48500 * 109.47367 * 150.27042 * 9 7 5 13 13 C 1.50700 * 109.47241 * 64.38071 * 3 2 1 14 14 C 1.38251 * 120.00647 * 260.54534 * 13 3 2 15 15 C 1.38210 * 120.00490 * 180.02562 * 14 13 3 16 16 C 1.38263 * 119.99835 * 359.96888 * 15 14 13 17 17 C 1.38216 * 119.99893 * 359.96341 * 16 15 14 18 18 C 1.38222 * 119.99668 * 80.26841 * 13 3 2 19 19 C 1.50701 * 119.99810 * 0.02562 * 18 13 3 20 20 H 1.09001 * 109.47352 * 304.64694 * 1 2 3 21 21 H 1.08999 * 109.47423 * 64.64603 * 1 2 3 22 22 H 1.09002 * 109.47178 * 184.64766 * 1 2 3 23 23 H 1.00898 * 110.99692 * 123.94601 * 2 1 3 24 24 H 0.97000 * 120.00108 * 359.73428 * 8 7 5 25 25 H 1.07999 * 119.99491 * 359.97438 * 14 13 3 26 26 H 1.07995 * 120.00298 * 179.97438 * 15 14 13 27 27 H 1.07996 * 120.00037 * 179.97438 * 16 15 14 28 28 H 1.08002 * 119.99904 * 180.02562 * 17 16 15 29 29 H 1.09003 * 109.47707 * 84.47661 * 19 18 13 30 30 H 1.08999 * 109.47046 * 204.47517 * 19 18 13 31 31 H 1.09003 * 109.47232 * 324.47677 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 3.0822 1.3435 -0.0787 5 6 1.4263 2.1280 -1.1725 6 1 0.7881 2.9830 -1.0052 7 6 1.7203 1.7286 -2.4590 8 7 2.4979 0.6877 -2.6628 9 14 1.0086 2.6615 -3.9124 10 1 -0.3008 2.0701 -4.2871 11 1 0.8198 4.0869 -3.5411 12 1 1.9412 2.5695 -5.0644 13 6 1.6019 2.0606 1.2811 14 6 0.5202 2.9214 1.2991 15 6 0.1596 3.5538 2.4740 16 6 0.8805 3.3252 3.6315 17 6 1.9611 2.4636 3.6139 18 6 2.3191 1.8277 2.4396 19 6 3.4948 0.8851 2.4212 20 1 -0.3634 0.5842 0.8454 21 1 -0.3634 0.4400 -0.9287 22 1 -0.3634 -1.0243 0.0833 23 1 1.8305 -0.5260 0.7814 24 1 2.8676 0.2033 -1.9081 25 1 -0.0426 3.1002 0.3949 26 1 -0.6851 4.2264 2.4879 27 1 0.5990 3.8196 4.5494 28 1 2.5239 2.2847 4.5181 29 1 4.3852 1.4211 2.0924 30 1 3.6586 0.4891 3.4234 31 1 3.2910 0.0634 1.7346 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259512109.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:39 Heat of formation + Delta-G solvation = 2.854454 kcal Electronic energy + Delta-G solvation = -13490.240240 eV Core-core repulsion = 11349.411440 eV Total energy + Delta-G solvation = -2140.828801 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.65857 -37.30572 -34.03900 -33.45144 -31.86604 -28.41307 -27.43727 -26.43434 -23.82269 -22.58452 -21.31501 -18.59467 -17.40489 -16.96206 -16.02809 -15.61719 -15.42246 -15.32890 -14.91678 -14.25782 -13.97701 -13.63366 -13.27419 -13.02442 -12.81383 -12.66731 -12.43211 -12.26584 -11.94747 -11.89200 -11.70237 -10.53319 -10.38281 -9.59846 -9.45322 -8.99052 -8.37031 -6.17512 0.52343 0.60415 1.54444 1.62409 1.78671 2.63186 2.92878 3.35030 3.88394 4.04674 4.09855 4.22242 4.31147 4.46642 4.62491 4.69508 4.73598 4.79192 4.89095 4.99100 5.10114 5.24257 5.30620 5.38617 5.63229 5.71715 5.82375 6.04358 6.25539 6.29329 6.58390 6.75549 7.05292 7.69901 9.00343 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.037537 B = 0.011554 C = 0.010290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.756447 B = 2422.828237 C = 2720.365027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.683 5.683 3 C 0.239 3.761 4 H 0.011 0.989 5 C -0.612 4.612 6 H 0.050 0.950 7 C -0.012 4.012 8 N -0.922 5.922 9 Si 1.105 2.895 10 H -0.279 1.279 11 H -0.276 1.276 12 H -0.287 1.287 13 C -0.106 4.106 14 C -0.119 4.119 15 C -0.140 4.140 16 C -0.129 4.129 17 C -0.127 4.127 18 C -0.111 4.111 19 C -0.110 4.110 20 H 0.011 0.989 21 H 0.043 0.957 22 H 0.057 0.943 23 H 0.314 0.686 24 H 0.275 0.725 25 H 0.110 0.890 26 H 0.136 0.864 27 H 0.150 0.850 28 H 0.145 0.855 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.714 2.850 11.507 12.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.312 5.312 3 C 0.132 3.868 4 H 0.029 0.971 5 C -0.650 4.650 6 H 0.068 0.932 7 C -0.215 4.215 8 N -0.558 5.558 9 Si 0.929 3.071 10 H -0.205 1.205 11 H -0.201 1.201 12 H -0.213 1.213 13 C -0.108 4.108 14 C -0.137 4.137 15 C -0.158 4.158 16 C -0.147 4.147 17 C -0.145 4.145 18 C -0.111 4.111 19 C -0.166 4.166 20 H 0.029 0.971 21 H 0.062 0.938 22 H 0.076 0.924 23 H 0.132 0.868 24 H 0.086 0.914 25 H 0.128 0.872 26 H 0.154 0.846 27 H 0.167 0.833 28 H 0.163 0.837 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.694 2.784 9.163 9.948 hybrid contribution -0.074 0.127 2.179 2.184 sum -2.767 2.911 11.342 12.032 Atomic orbital electron populations 1.21744 0.88772 0.99077 0.99426 1.61024 1.07935 1.15462 1.46803 1.18078 0.93725 0.85055 0.89931 0.97129 1.22202 1.34885 1.15239 0.92684 0.93197 1.26839 0.95149 0.96805 1.02737 1.70659 1.30416 1.18495 1.36239 0.83083 0.75855 0.74909 0.73203 1.20513 1.20121 1.21272 1.20943 0.95832 0.97619 0.96456 1.21363 0.97403 0.96714 0.98237 1.21428 1.00981 1.00534 0.92808 1.21389 0.95774 0.98899 0.98601 1.21282 0.98140 0.97656 0.97435 1.20175 0.97982 0.99548 0.93433 1.20797 0.95133 0.97561 1.03140 0.97101 0.93778 0.92392 0.86812 0.91437 0.87248 0.84608 0.83269 0.83711 0.91822 0.89235 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.62 10.00 127.69 1.28 3.90 16 2 N -0.68 -32.16 5.70 -522.47 -2.98 -35.14 16 3 C 0.24 11.98 1.46 43.42 0.06 12.04 16 4 H 0.01 0.60 7.07 -2.39 -0.02 0.59 16 5 C -0.61 -33.90 6.59 25.60 0.17 -33.74 16 6 H 0.05 2.76 5.40 -2.91 -0.02 2.74 16 7 C -0.01 -0.70 5.41 84.66 0.46 -0.24 16 8 N -0.92 -56.42 13.54 21.45 0.29 -56.13 16 9 Si 1.11 51.11 29.90 68.60 2.05 53.16 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 13 C -0.11 -4.59 4.38 -19.86 -0.09 -4.68 16 14 C -0.12 -4.88 7.90 22.27 0.18 -4.70 16 15 C -0.14 -4.56 10.05 22.27 0.22 -4.34 16 16 C -0.13 -3.64 10.05 22.27 0.22 -3.41 16 17 C -0.13 -3.78 9.68 22.27 0.22 -3.56 16 18 C -0.11 -4.01 5.88 -19.86 -0.12 -4.12 16 19 C -0.11 -3.46 9.12 71.24 0.65 -2.81 16 20 H 0.01 0.45 6.30 -2.39 -0.02 0.44 16 21 H 0.04 2.17 7.15 -2.39 -0.02 2.15 16 22 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 23 H 0.31 13.22 6.98 -89.70 -0.63 12.60 16 24 H 0.27 16.99 6.50 -92.71 -0.60 16.39 16 25 H 0.11 4.90 5.80 -2.91 -0.02 4.88 16 26 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 27 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 28 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 29 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.09 2.18 8.05 -2.39 -0.02 2.16 16 31 H 0.05 1.90 5.43 -2.39 -0.01 1.88 16 Total: -1.00 -64.54 250.11 3.28 -61.26 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.67 Total: 22.52 kcal Atomic # 6 Polarization: -48.92 SS G_CDS: 3.25 Total: -45.67 kcal Atomic # 7 Polarization: -88.58 SS G_CDS: -2.69 Total: -91.27 kcal Atomic # 14 Polarization: 51.11 SS G_CDS: 2.05 Total: 53.16 kcal Total: -64.54 3.28 -61.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259512109.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.111 kcal (2) G-P(sol) polarization free energy of solvation -64.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds