Wall clock time and date at job start Mon Mar 30 2020 02:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99655 * 2 1 4 4 H 1.48498 * 109.47427 * 240.00047 * 3 2 1 5 5 H 1.48501 * 109.47095 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47233 * 120.00071 * 3 2 1 7 7 C 1.37874 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00045 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99931 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.17063 * 60.46118 * 9 7 2 11 11 N 1.46729 * 109.30712 * 300.87960 * 9 7 2 12 12 C 1.47144 * 110.38173 * 187.19331 * 11 9 7 13 13 C 1.52984 * 108.60704 * 71.15009 * 12 11 9 14 14 C 1.50420 * 109.82696 * 309.83818 * 13 12 11 15 15 C 1.38776 * 119.47200 * 196.72809 * 14 13 12 16 16 N 1.32295 * 119.07910 * 180.36012 * 15 14 13 17 17 C 1.31815 * 120.68775 * 0.02562 * 16 15 14 18 18 N 1.31679 * 121.78649 * 359.88934 * 17 16 15 19 19 C 1.32704 * 120.88558 * 0.02562 * 18 17 16 20 20 H 0.96995 * 120.00619 * 359.97438 * 1 2 3 21 21 H 1.00901 * 111.03382 * 310.73157 * 11 9 7 22 22 H 1.08995 * 109.61234 * 311.40624 * 12 11 9 23 23 H 1.09001 * 109.75729 * 190.97041 * 12 11 9 24 24 H 1.09005 * 109.41093 * 189.72777 * 13 12 11 25 25 H 1.09000 * 109.35286 * 69.91204 * 13 12 11 26 26 H 1.07995 * 120.46044 * 0.33836 * 15 14 13 27 27 H 1.08008 * 119.10250 * 179.90695 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6323 -2.5551 -0.8960 11 7 0.3935 -2.5642 1.1883 12 6 -0.2223 -3.8955 1.3036 13 6 0.8606 -4.9018 1.6976 14 6 2.0461 -4.7599 0.7827 15 6 2.9871 -5.7780 0.7215 16 7 4.0305 -5.6419 -0.0804 17 6 4.1789 -4.5561 -0.8128 18 7 3.3043 -3.5723 -0.7799 19 6 2.2323 -3.6396 -0.0005 20 1 -0.4851 0.8399 0.0004 21 1 0.9122 -2.3322 2.0221 22 1 -0.6570 -4.1818 0.3459 23 1 -0.9998 -3.8769 2.0673 24 1 0.4613 -5.9130 1.6190 25 1 1.1715 -4.7140 2.7252 26 1 2.8695 -6.6689 1.3205 27 1 5.0413 -4.4711 -1.4575 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259560264.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:35 Heat of formation + Delta-G solvation = 50.192185 kcal Electronic energy + Delta-G solvation = -13140.631888 eV Core-core repulsion = 10898.315462 eV Total energy + Delta-G solvation = -2242.316426 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.64285 -36.79682 -33.68068 -32.45399 -31.01201 -29.41908 -25.69598 -24.11078 -23.57516 -21.56707 -20.10218 -17.17799 -16.41481 -16.37830 -14.81849 -14.43325 -14.29194 -13.85228 -13.23125 -13.18020 -12.66566 -12.30655 -11.89869 -11.67474 -10.86661 -10.79537 -10.75101 -10.18028 -10.01500 -9.76335 -9.27859 -8.67564 -8.54215 -8.39046 -7.15627 -5.93520 -4.06228 1.46846 1.71974 3.35953 3.40088 3.44100 4.34850 4.48522 4.62600 4.79339 5.11509 5.13554 5.29042 5.38592 5.60044 5.75451 5.83676 5.97770 6.17740 6.31917 6.48608 6.54171 7.05145 7.20938 7.54117 7.90863 8.02959 8.36302 8.67357 8.81781 9.03711 9.60718 11.11098 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.037913 B = 0.012346 C = 0.009769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.363557 B = 2267.353549 C = 2865.578339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.080 3.920 3 Si 0.891 3.109 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.521 4.521 8 H 0.064 0.936 9 C 0.257 3.743 10 H 0.067 0.933 11 N -0.637 5.637 12 C 0.048 3.952 13 C -0.107 4.107 14 C -0.203 4.203 15 C 0.133 3.867 16 N -0.543 5.543 17 C 0.271 3.729 18 N -0.493 5.493 19 C 0.182 3.818 20 H 0.258 0.742 21 H 0.330 0.670 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.155 0.845 27 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.685 -8.266 2.686 8.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.127 4.127 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.561 4.561 8 H 0.082 0.918 9 C 0.148 3.852 10 H 0.084 0.916 11 N -0.264 5.264 12 C -0.083 4.083 13 C -0.147 4.147 14 C -0.208 4.208 15 C -0.033 4.033 16 N -0.257 5.257 17 C -0.018 4.018 18 N -0.206 5.206 19 C 0.035 3.965 20 H 0.068 0.932 21 H 0.147 0.853 22 H 0.083 0.917 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.172 0.828 27 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 1.724 -7.747 1.762 8.130 hybrid contribution 0.681 0.080 0.844 1.088 sum 2.406 -7.667 2.606 8.448 Atomic orbital electron populations 1.70092 1.05616 1.26153 1.46615 1.24970 0.94737 0.98785 0.94201 0.86697 0.79623 0.83158 0.78647 1.20186 1.21345 1.20418 1.20775 0.92711 0.88473 1.54104 0.91824 1.18277 0.86580 0.88746 0.91574 0.91568 1.61388 1.36830 1.22195 1.05955 1.22149 0.95570 0.89504 1.01059 1.21128 0.94477 1.01550 0.97542 1.21291 0.99984 0.97076 1.02400 1.22961 0.88864 0.97460 0.93997 1.68316 1.22846 1.26048 1.08534 1.24922 0.97422 0.84984 0.94437 1.68588 1.02879 1.28212 1.20917 1.23493 0.92359 0.94443 0.86208 0.93179 0.85265 0.91727 0.91294 0.91182 0.90926 0.82759 0.79805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.91 12.72 55.43 0.71 -23.20 15 2 C 0.08 2.17 5.38 -17.82 -0.10 2.08 15 3 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 15 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 15 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 7 C -0.52 -14.15 8.32 -34.44 -0.29 -14.43 15 8 H 0.06 1.78 7.32 -52.49 -0.38 1.39 15 9 C 0.26 6.32 2.51 -70.23 -0.18 6.14 15 10 H 0.07 1.82 8.14 -51.93 -0.42 1.39 15 11 N -0.64 -14.23 5.88 -109.27 -0.64 -14.88 15 12 C 0.05 0.85 6.62 -3.70 -0.02 0.82 15 13 C -0.11 -1.63 5.87 -28.03 -0.16 -1.80 15 14 C -0.20 -3.73 5.77 -104.66 -0.60 -4.33 15 15 C 0.13 2.22 10.98 -17.15 -0.19 2.03 15 16 N -0.54 -9.75 10.44 -14.56 -0.15 -9.90 15 17 C 0.27 5.04 12.28 -92.24 -1.13 3.91 15 18 N -0.49 -10.85 9.48 -10.98 -0.10 -10.95 15 19 C 0.18 4.00 6.23 -82.44 -0.51 3.49 15 20 H 0.26 6.98 8.31 -40.82 -0.34 6.64 15 21 H 0.33 7.34 8.56 -39.29 -0.34 7.00 15 22 H 0.06 1.18 8.05 -51.93 -0.42 0.76 15 23 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 24 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 25 H 0.07 1.04 8.14 -51.93 -0.42 0.61 15 26 H 0.16 1.99 8.06 -52.49 -0.42 1.57 15 27 H 0.19 2.75 8.06 -52.48 -0.42 2.33 15 LS Contribution 234.27 15.07 3.53 3.53 Total: -1.00 -29.54 234.27 -7.68 -37.22 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -2.81 Total: 4.10 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -3.19 Total: -2.09 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: -0.19 Total: -58.93 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -29.54 -7.68 -37.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259560264.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.416 kcal (2) G-P(sol) polarization free energy of solvation -29.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds