Wall clock time and date at job start Mon Mar 30 2020 02:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99655 * 2 1 4 4 H 1.48498 * 109.47427 * 240.00047 * 3 2 1 5 5 H 1.48501 * 109.47095 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47233 * 120.00071 * 3 2 1 7 7 C 1.37874 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00045 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99931 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.17063 * 60.46118 * 9 7 2 11 11 N 1.46729 * 109.30712 * 300.87960 * 9 7 2 12 12 C 1.47144 * 110.38173 * 187.19331 * 11 9 7 13 13 C 1.52984 * 108.60704 * 71.15009 * 12 11 9 14 14 C 1.50420 * 109.82696 * 309.83818 * 13 12 11 15 15 C 1.38776 * 119.47200 * 196.72809 * 14 13 12 16 16 N 1.32295 * 119.07910 * 180.36012 * 15 14 13 17 17 C 1.31815 * 120.68775 * 0.02562 * 16 15 14 18 18 N 1.31679 * 121.78649 * 359.88934 * 17 16 15 19 19 C 1.32704 * 120.88558 * 0.02562 * 18 17 16 20 20 H 0.96995 * 120.00619 * 359.97438 * 1 2 3 21 21 H 1.00901 * 111.03382 * 310.73157 * 11 9 7 22 22 H 1.08995 * 109.61234 * 311.40624 * 12 11 9 23 23 H 1.09001 * 109.75729 * 190.97041 * 12 11 9 24 24 H 1.09005 * 109.41093 * 189.72777 * 13 12 11 25 25 H 1.09000 * 109.35286 * 69.91204 * 13 12 11 26 26 H 1.07995 * 120.46044 * 0.33836 * 15 14 13 27 27 H 1.08008 * 119.10250 * 179.90695 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6323 -2.5551 -0.8960 11 7 0.3935 -2.5642 1.1883 12 6 -0.2223 -3.8955 1.3036 13 6 0.8606 -4.9018 1.6976 14 6 2.0461 -4.7599 0.7827 15 6 2.9871 -5.7780 0.7215 16 7 4.0305 -5.6419 -0.0804 17 6 4.1789 -4.5561 -0.8128 18 7 3.3043 -3.5723 -0.7799 19 6 2.2323 -3.6396 -0.0005 20 1 -0.4851 0.8399 0.0004 21 1 0.9122 -2.3322 2.0221 22 1 -0.6570 -4.1818 0.3459 23 1 -0.9998 -3.8769 2.0673 24 1 0.4613 -5.9130 1.6190 25 1 1.1715 -4.7140 2.7252 26 1 2.8695 -6.6689 1.3205 27 1 5.0413 -4.4711 -1.4575 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259560264.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:35 Heat of formation + Delta-G solvation = 29.566202 kcal Electronic energy + Delta-G solvation = -13141.526298 eV Core-core repulsion = 10898.315462 eV Total energy + Delta-G solvation = -2243.210836 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.11540 -38.36784 -35.28957 -34.27605 -32.58243 -31.04544 -27.48339 -25.74999 -25.04597 -23.22397 -21.60523 -18.88481 -18.13321 -17.89857 -16.56947 -16.15022 -15.76006 -15.38813 -14.85034 -14.57770 -14.31152 -13.76355 -13.46504 -13.40588 -12.76154 -12.62892 -12.24037 -11.94573 -11.76522 -11.36610 -11.06586 -10.57223 -10.12383 -10.01553 -8.79333 -8.00763 -6.19381 0.04727 0.23528 1.44482 1.45866 1.53539 2.46707 2.90930 3.17817 3.34253 3.39035 3.71848 3.81166 3.99838 4.08339 4.38001 4.44061 4.64972 4.89745 4.98802 5.03855 5.14948 5.31528 5.59874 5.77813 5.98406 6.21644 6.54457 6.97491 6.99592 7.30464 7.50830 9.03037 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.037913 B = 0.012346 C = 0.009769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.363557 B = 2267.353549 C = 2865.578339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.037 3.963 3 Si 0.950 3.050 4 H -0.278 1.278 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.047 0.953 9 C 0.265 3.735 10 H 0.020 0.980 11 N -0.655 5.655 12 C 0.047 3.953 13 C -0.096 4.096 14 C -0.202 4.202 15 C 0.144 3.856 16 N -0.541 5.541 17 C 0.265 3.735 18 N -0.532 5.532 19 C 0.147 3.853 20 H 0.258 0.742 21 H 0.328 0.672 22 H 0.051 0.949 23 H 0.093 0.907 24 H 0.110 0.890 25 H 0.092 0.908 26 H 0.204 0.796 27 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.233 -9.939 3.991 10.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.167 4.167 3 Si 0.776 3.224 4 H -0.204 1.204 5 H -0.206 1.206 6 H -0.199 1.199 7 C -0.574 4.574 8 H 0.066 0.934 9 C 0.155 3.845 10 H 0.038 0.962 11 N -0.283 5.283 12 C -0.083 4.083 13 C -0.136 4.136 14 C -0.207 4.207 15 C -0.022 4.022 16 N -0.255 5.255 17 C -0.023 4.023 18 N -0.246 5.246 19 C 0.001 3.999 20 H 0.067 0.933 21 H 0.145 0.855 22 H 0.070 0.930 23 H 0.111 0.889 24 H 0.128 0.872 25 H 0.110 0.890 26 H 0.220 0.780 27 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 2.272 -9.425 3.067 10.168 hybrid contribution 0.526 0.492 0.425 0.836 sum 2.797 -8.933 3.492 9.991 Atomic orbital electron populations 1.70201 1.06736 1.26710 1.47688 1.25623 0.95495 1.01630 0.93997 0.85769 0.78474 0.79688 0.78455 1.20386 1.20631 1.19941 1.20967 0.92174 0.90325 1.53898 0.93441 1.17774 0.86702 0.89199 0.90806 0.96209 1.61108 1.36486 1.25776 1.04898 1.22218 0.96709 0.88021 1.01355 1.21105 0.92253 1.02701 0.97508 1.21571 1.01410 0.95926 1.01745 1.23700 0.87331 0.98086 0.93128 1.68436 1.23250 1.25361 1.08464 1.25447 0.97506 0.84510 0.94836 1.68465 1.03880 1.30203 1.22051 1.23128 0.92691 0.95351 0.88690 0.93268 0.85474 0.93001 0.88882 0.87189 0.88982 0.77952 0.77031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.65 12.72 21.45 0.27 -50.38 15 2 C 0.04 2.03 5.38 84.65 0.46 2.49 15 3 Si 0.95 44.31 29.54 68.60 2.03 46.33 15 4 H -0.28 -12.94 7.11 99.48 0.71 -12.24 15 5 H -0.28 -12.69 7.11 99.48 0.71 -11.99 15 6 H -0.27 -12.48 7.11 99.48 0.71 -11.77 15 7 C -0.53 -30.02 8.32 25.60 0.21 -29.81 15 8 H 0.05 2.75 7.32 -2.91 -0.02 2.73 15 9 C 0.26 13.49 2.51 43.37 0.11 13.60 15 10 H 0.02 1.19 8.14 -2.39 -0.02 1.17 15 11 N -0.66 -29.65 5.88 -499.63 -2.94 -32.59 15 12 C 0.05 1.59 6.62 86.25 0.57 2.16 15 13 C -0.10 -2.59 5.87 29.75 0.17 -2.42 15 14 C -0.20 -6.96 5.77 -19.89 -0.11 -7.08 15 15 C 0.14 4.25 10.98 84.75 0.93 5.18 15 16 N -0.54 -17.89 10.44 -199.99 -2.09 -19.98 15 17 C 0.26 9.54 12.28 180.91 2.22 11.76 15 18 N -0.53 -23.64 9.48 -188.64 -1.79 -25.43 15 19 C 0.15 6.53 6.23 42.28 0.26 6.79 15 20 H 0.26 14.23 8.31 -92.71 -0.77 13.46 15 21 H 0.33 14.69 8.56 -89.69 -0.77 13.92 15 22 H 0.05 1.87 8.05 -2.39 -0.02 1.85 15 23 H 0.09 2.70 8.14 -2.39 -0.02 2.68 15 24 H 0.11 2.18 8.14 -2.38 -0.02 2.16 15 25 H 0.09 2.22 8.14 -2.39 -0.02 2.20 15 26 H 0.20 3.95 8.06 -2.91 -0.02 3.93 15 27 H 0.21 6.03 8.06 -2.91 -0.02 6.01 15 Total: -1.00 -65.97 234.27 0.73 -65.24 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.42 Total: 14.12 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 4.82 Total: 2.68 kcal Atomic # 7 Polarization: -121.83 SS G_CDS: -6.54 Total: -128.38 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -65.97 0.73 -65.24 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259560264.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.808 kcal (2) G-P(sol) polarization free energy of solvation -65.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds