Wall clock time and date at job start Mon Mar 30 2020 02:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39412 * 126.44933 * 2 1 4 4 C 1.35598 * 108.08134 * 180.21021 * 3 2 1 5 5 N 1.36686 * 109.03204 * 359.82947 * 4 3 2 6 6 C 1.37647 * 108.51368 * 359.91748 * 5 4 3 7 7 C 1.39953 * 126.36435 * 180.02562 * 6 5 4 8 8 H 1.07998 * 119.99664 * 216.67974 * 7 6 5 9 9 C 1.40064 * 119.99524 * 36.96249 * 7 6 5 10 10 N 1.30854 * 120.00271 * 21.88757 * 9 7 6 11 11 Si 1.86807 * 119.99651 * 201.89034 * 9 7 6 12 12 H 1.48498 * 109.47124 * 59.99715 * 11 9 7 13 13 H 1.48498 * 109.46983 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47116 * 299.99950 * 11 9 7 15 15 C 1.46715 * 124.42673 * 179.88524 * 5 4 3 16 16 C 1.53223 * 108.78862 * 342.74209 * 15 5 4 17 17 C 1.53125 * 109.55515 * 50.77215 * 16 15 5 18 18 C 1.51106 * 126.98699 * 179.88430 * 4 3 2 19 19 H 1.08995 * 109.47629 * 269.70323 * 1 2 3 20 20 H 1.09006 * 109.47233 * 29.70506 * 1 2 3 21 21 H 1.09006 * 109.47069 * 149.70187 * 1 2 3 22 22 H 1.07999 * 125.95659 * 359.97438 * 3 2 1 23 23 H 0.97008 * 120.00308 * 174.23993 * 10 9 7 24 24 H 1.09003 * 109.58772 * 102.53385 * 15 5 4 25 25 H 1.09003 * 109.58593 * 222.95631 * 15 5 4 26 26 H 1.08991 * 109.45339 * 170.79863 * 16 15 5 27 27 H 1.08997 * 109.45405 * 290.74581 * 16 15 5 28 28 H 1.09007 * 109.51508 * 49.96606 * 17 16 15 29 29 H 1.09001 * 109.51447 * 170.06057 * 17 16 15 30 30 H 1.08997 * 109.72078 * 44.38257 * 18 4 3 31 31 H 1.08997 * 109.72410 * 283.72593 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3352 1.1214 0.0000 4 6 3.6221 0.6941 -0.0047 5 7 3.6380 -0.6727 -0.0039 6 6 2.3379 -1.1248 0.0033 7 6 1.9244 -2.4619 0.0069 8 1 1.0453 -2.7567 -0.5469 9 6 2.6472 -3.4164 0.7336 10 7 3.4160 -3.0407 1.7236 11 14 2.5139 -5.2260 0.2894 12 1 2.9629 -5.4261 -1.1119 13 1 3.3710 -6.0242 1.2022 14 1 1.1020 -5.6660 0.4243 15 6 4.8577 -1.4880 -0.0106 16 6 6.0352 -0.6109 -0.4484 17 6 6.0570 0.6722 0.3869 18 6 4.8652 1.5531 -0.0090 19 1 -0.3634 -0.0053 1.0276 20 1 -0.3634 0.8927 -0.5093 21 1 -0.3633 -0.8873 -0.5185 22 1 2.0088 2.1509 -0.0004 23 1 3.8509 -3.7061 2.2796 24 1 5.0435 -1.8757 0.9911 25 1 4.7396 -2.3164 -0.7091 26 1 6.9678 -1.1556 -0.3016 27 1 5.9259 -0.3562 -1.5026 28 1 5.9871 0.4192 1.4449 29 1 6.9862 1.2112 0.2022 30 1 4.7535 2.3653 0.7093 31 1 5.0259 1.9628 -1.0062 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259570444.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:17 Heat of formation + Delta-G solvation = 17.877943 kcal Electronic energy + Delta-G solvation = -13637.040501 eV Core-core repulsion = 11496.863168 eV Total energy + Delta-G solvation = -2140.177333 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.64088 -35.09830 -33.45347 -31.14163 -29.87701 -27.68291 -25.62319 -24.35102 -21.89037 -20.59522 -18.04475 -17.90382 -16.50523 -15.08895 -14.36457 -14.31129 -13.29742 -13.14765 -12.80401 -12.57078 -12.44780 -11.75955 -11.70815 -11.35592 -11.17939 -10.89250 -10.64536 -10.44089 -10.33669 -10.15550 -10.01109 -9.89438 -9.56684 -8.76741 -6.85344 -6.63050 -6.34701 -4.11068 3.02973 3.11905 3.16451 3.89333 4.04622 4.35203 4.61259 5.20706 5.40370 5.42288 5.49419 5.96195 6.14243 6.23308 6.31987 6.46258 6.48601 6.62841 6.66220 6.72364 6.93751 6.97339 6.99631 7.04494 7.33129 7.36384 7.75483 7.92169 8.26275 8.40451 8.83081 9.01288 9.25617 9.47504 10.37822 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.029529 B = 0.015206 C = 0.010731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.993517 B = 1840.893925 C = 2608.687989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 C -0.305 4.305 3 C -0.165 4.165 4 C -0.088 4.088 5 N -0.436 5.436 6 C 0.250 3.750 7 C -0.471 4.471 8 H 0.086 0.914 9 C 0.076 3.924 10 N -0.820 5.820 11 Si 0.900 3.100 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.267 1.267 15 C 0.124 3.876 16 C -0.133 4.133 17 C -0.117 4.117 18 C -0.031 4.031 19 H 0.031 0.969 20 H 0.029 0.971 21 H 0.041 0.959 22 H 0.099 0.901 23 H 0.276 0.724 24 H 0.092 0.908 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.358 1.898 -2.049 5.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.310 4.310 3 C -0.190 4.190 4 C -0.195 4.195 5 N -0.116 5.116 6 C 0.137 3.863 7 C -0.506 4.506 8 H 0.104 0.896 9 C -0.139 4.139 10 N -0.450 5.450 11 Si 0.725 3.275 12 H -0.193 1.193 13 H -0.207 1.207 14 H -0.191 1.191 15 C 0.002 3.998 16 C -0.171 4.171 17 C -0.155 4.155 18 C -0.068 4.068 19 H 0.049 0.951 20 H 0.048 0.952 21 H 0.060 0.940 22 H 0.117 0.883 23 H 0.087 0.913 24 H 0.109 0.891 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.871 1.661 -1.929 5.495 hybrid contribution 0.040 -0.952 -0.010 0.953 sum 4.911 0.709 -1.939 5.327 Atomic orbital electron populations 1.19585 0.92716 0.98623 0.98564 1.19418 0.93428 0.92068 1.26046 1.19736 0.91738 0.96276 1.11265 1.19706 0.94353 0.83477 1.21951 1.44141 1.05238 1.04121 1.58058 1.17546 0.80198 0.92806 0.95714 1.18415 1.11749 0.90415 1.30070 0.89601 1.25728 0.93638 1.00662 0.93827 1.69773 1.26326 1.36008 1.12910 0.86500 0.79185 0.82541 0.79263 1.19272 1.20702 1.19141 1.21743 0.82509 0.92485 1.03066 1.21885 0.98230 0.96949 1.00046 1.21530 0.97685 0.96073 1.00175 1.19953 0.91179 0.95898 0.99811 0.95066 0.95200 0.93992 0.88253 0.91297 0.89070 0.92068 0.91634 0.92178 0.91929 0.92623 0.92168 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.86 10.19 36.00 0.37 -0.49 16 2 C -0.31 -8.09 6.25 -103.58 -0.65 -8.73 16 3 C -0.16 -4.10 10.67 -40.09 -0.43 -4.53 16 4 C -0.09 -2.12 6.58 -81.17 -0.53 -2.66 16 5 N -0.44 -11.19 3.13 -109.11 -0.34 -11.53 16 6 C 0.25 6.96 6.13 -84.01 -0.51 6.44 16 7 C -0.47 -12.90 8.81 -38.26 -0.34 -13.24 16 8 H 0.09 2.30 7.74 -52.49 -0.41 1.89 16 9 C 0.08 1.94 4.47 -17.28 -0.08 1.86 16 10 N -0.82 -21.45 10.39 55.56 0.58 -20.88 16 11 Si 0.90 19.21 29.62 -169.99 -5.04 14.18 16 12 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 13 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 14 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 15 C 0.12 2.81 5.14 -3.81 -0.02 2.79 16 16 C -0.13 -2.40 5.93 -26.55 -0.16 -2.56 16 17 C -0.12 -2.02 5.95 -26.46 -0.16 -2.18 16 18 C -0.03 -0.58 6.28 -27.48 -0.17 -0.75 16 19 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 20 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.04 0.93 7.80 -51.93 -0.40 0.53 16 22 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 23 H 0.28 6.68 8.31 -40.82 -0.34 6.34 16 24 H 0.09 2.18 6.22 -51.93 -0.32 1.86 16 25 H 0.06 1.41 7.90 -51.93 -0.41 1.00 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.06 1.07 8.11 -51.93 -0.42 0.65 16 28 H 0.06 1.15 8.12 -51.92 -0.42 0.73 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 251.96 15.07 3.80 3.80 Total: -1.00 -28.97 251.96 -8.16 -37.13 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -4.48 Total: 1.35 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: -2.68 Total: -24.05 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: 0.24 Total: -32.40 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.04 Total: 14.18 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.97 -8.16 -37.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259570444.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.010 kcal (2) G-P(sol) polarization free energy of solvation -28.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds