Wall clock time and date at job start Mon Mar 30 2020 02:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39412 * 126.44933 * 2 1 4 4 C 1.35598 * 108.08134 * 180.21021 * 3 2 1 5 5 N 1.36686 * 109.03204 * 359.82947 * 4 3 2 6 6 C 1.37647 * 108.51368 * 359.91748 * 5 4 3 7 7 C 1.39953 * 126.36435 * 180.02562 * 6 5 4 8 8 H 1.07998 * 119.99664 * 216.67974 * 7 6 5 9 9 C 1.40064 * 119.99524 * 36.96249 * 7 6 5 10 10 N 1.30854 * 120.00271 * 21.88757 * 9 7 6 11 11 Si 1.86807 * 119.99651 * 201.89034 * 9 7 6 12 12 H 1.48498 * 109.47124 * 59.99715 * 11 9 7 13 13 H 1.48498 * 109.46983 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47116 * 299.99950 * 11 9 7 15 15 C 1.46715 * 124.42673 * 179.88524 * 5 4 3 16 16 C 1.53223 * 108.78862 * 342.74209 * 15 5 4 17 17 C 1.53125 * 109.55515 * 50.77215 * 16 15 5 18 18 C 1.51106 * 126.98699 * 179.88430 * 4 3 2 19 19 H 1.08995 * 109.47629 * 269.70323 * 1 2 3 20 20 H 1.09006 * 109.47233 * 29.70506 * 1 2 3 21 21 H 1.09006 * 109.47069 * 149.70187 * 1 2 3 22 22 H 1.07999 * 125.95659 * 359.97438 * 3 2 1 23 23 H 0.97008 * 120.00308 * 174.23993 * 10 9 7 24 24 H 1.09003 * 109.58772 * 102.53385 * 15 5 4 25 25 H 1.09003 * 109.58593 * 222.95631 * 15 5 4 26 26 H 1.08991 * 109.45339 * 170.79863 * 16 15 5 27 27 H 1.08997 * 109.45405 * 290.74581 * 16 15 5 28 28 H 1.09007 * 109.51508 * 49.96606 * 17 16 15 29 29 H 1.09001 * 109.51447 * 170.06057 * 17 16 15 30 30 H 1.08997 * 109.72078 * 44.38257 * 18 4 3 31 31 H 1.08997 * 109.72410 * 283.72593 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3352 1.1214 0.0000 4 6 3.6221 0.6941 -0.0047 5 7 3.6380 -0.6727 -0.0039 6 6 2.3379 -1.1248 0.0033 7 6 1.9244 -2.4619 0.0069 8 1 1.0453 -2.7567 -0.5469 9 6 2.6472 -3.4164 0.7336 10 7 3.4160 -3.0407 1.7236 11 14 2.5139 -5.2260 0.2894 12 1 2.9629 -5.4261 -1.1119 13 1 3.3710 -6.0242 1.2022 14 1 1.1020 -5.6660 0.4243 15 6 4.8577 -1.4880 -0.0106 16 6 6.0352 -0.6109 -0.4484 17 6 6.0570 0.6722 0.3869 18 6 4.8652 1.5531 -0.0090 19 1 -0.3634 -0.0053 1.0276 20 1 -0.3634 0.8927 -0.5093 21 1 -0.3633 -0.8873 -0.5185 22 1 2.0088 2.1509 -0.0004 23 1 3.8509 -3.7061 2.2796 24 1 5.0435 -1.8757 0.9911 25 1 4.7396 -2.3164 -0.7091 26 1 6.9678 -1.1556 -0.3016 27 1 5.9259 -0.3562 -1.5026 28 1 5.9871 0.4192 1.4449 29 1 6.9862 1.2112 0.2022 30 1 4.7535 2.3653 0.7093 31 1 5.0259 1.9628 -1.0062 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259570444.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:17 Heat of formation + Delta-G solvation = 2.477632 kcal Electronic energy + Delta-G solvation = -13637.708309 eV Core-core repulsion = 11496.863168 eV Total energy + Delta-G solvation = -2140.845141 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.48672 -36.71108 -35.38877 -32.90476 -31.66844 -29.56648 -27.37780 -26.13865 -23.68870 -22.22496 -19.93046 -19.70155 -18.37649 -16.97105 -16.12748 -16.00134 -14.84887 -14.68132 -14.50447 -14.35367 -14.25745 -13.54535 -13.47677 -13.15858 -12.91115 -12.74406 -12.32838 -12.16895 -11.92772 -11.82958 -11.72122 -11.56705 -11.26596 -10.67508 -8.78343 -8.57301 -8.30984 -6.11932 1.30614 1.37886 1.47552 2.00160 2.24692 2.43499 2.79043 3.22450 3.92065 3.95377 4.06574 4.37869 4.65957 4.71319 4.75564 4.90841 4.93538 5.05995 5.08963 5.11385 5.13042 5.14494 5.21692 5.36736 5.44279 5.48888 5.83599 5.99994 6.28946 6.42565 6.85596 7.11184 7.30088 7.53569 8.46274 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.029529 B = 0.015206 C = 0.010731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.993517 B = 1840.893925 C = 2608.687989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 C -0.335 4.335 3 C -0.193 4.193 4 C -0.087 4.087 5 N -0.446 5.446 6 C 0.204 3.796 7 C -0.506 4.506 8 H 0.076 0.924 9 C 0.042 3.958 10 N -0.845 5.845 11 Si 0.969 3.031 12 H -0.265 1.265 13 H -0.269 1.269 14 H -0.264 1.264 15 C 0.120 3.880 16 C -0.126 4.126 17 C -0.112 4.112 18 C -0.032 4.032 19 H 0.030 0.970 20 H 0.053 0.947 21 H 0.037 0.963 22 H 0.120 0.880 23 H 0.283 0.717 24 H 0.075 0.925 25 H 0.045 0.955 26 H 0.097 0.903 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.953 2.215 -2.392 6.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.339 4.339 3 C -0.219 4.219 4 C -0.194 4.194 5 N -0.125 5.125 6 C 0.091 3.909 7 C -0.541 4.541 8 H 0.094 0.906 9 C -0.171 4.171 10 N -0.475 5.475 11 Si 0.792 3.208 12 H -0.190 1.190 13 H -0.194 1.194 14 H -0.189 1.189 15 C -0.002 4.002 16 C -0.163 4.163 17 C -0.149 4.149 18 C -0.070 4.070 19 H 0.049 0.951 20 H 0.071 0.929 21 H 0.056 0.944 22 H 0.138 0.862 23 H 0.093 0.907 24 H 0.092 0.908 25 H 0.064 0.936 26 H 0.116 0.884 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.118 0.882 30 H 0.095 0.905 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.470 1.986 -2.268 7.138 hybrid contribution -0.454 -0.968 0.108 1.075 sum 6.016 1.018 -2.160 6.472 Atomic orbital electron populations 1.19570 0.91138 0.99529 0.98755 1.20036 0.95157 0.92654 1.26077 1.20092 0.92262 0.96956 1.12540 1.20627 0.96301 0.83506 1.19012 1.44410 1.05441 1.05079 1.57522 1.17973 0.81706 0.93572 0.97679 1.18557 1.12689 0.91441 1.31451 0.90587 1.26432 0.92868 1.04717 0.93039 1.69831 1.26650 1.37627 1.13398 0.85439 0.79321 0.77008 0.79074 1.18955 1.19361 1.18861 1.21819 0.83410 0.93089 1.01845 1.21886 0.97261 0.96939 1.00255 1.21531 0.98843 0.95624 0.98948 1.20141 0.89447 0.95739 1.01637 0.95120 0.92852 0.94442 0.86226 0.90663 0.90751 0.93619 0.88447 0.91691 0.93435 0.88248 0.90519 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.52 10.19 71.24 0.73 -0.79 16 2 C -0.33 -18.09 6.25 -19.19 -0.12 -18.21 16 3 C -0.19 -9.61 10.67 21.94 0.23 -9.37 16 4 C -0.09 -4.12 6.58 41.32 0.27 -3.84 16 5 N -0.45 -23.05 3.13 -499.10 -1.56 -24.61 16 6 C 0.20 11.65 6.13 39.04 0.24 11.89 16 7 C -0.51 -28.69 8.81 23.13 0.20 -28.49 16 8 H 0.08 4.27 7.74 -2.91 -0.02 4.25 16 9 C 0.04 2.16 4.47 85.28 0.38 2.54 16 10 N -0.84 -44.88 10.39 21.85 0.23 -44.66 16 11 Si 0.97 39.76 29.62 68.60 2.03 41.80 16 12 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 13 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 14 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 15 C 0.12 5.42 5.14 86.41 0.44 5.86 16 16 C -0.13 -4.19 5.93 30.71 0.18 -4.01 16 17 C -0.11 -3.48 5.95 30.77 0.18 -3.29 16 18 C -0.03 -1.12 6.28 30.11 0.19 -0.93 16 19 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 20 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 21 H 0.04 1.71 7.80 -2.38 -0.02 1.69 16 22 H 0.12 5.25 8.06 -2.91 -0.02 5.23 16 23 H 0.28 13.75 8.31 -92.70 -0.77 12.98 16 24 H 0.07 3.60 6.22 -2.39 -0.01 3.58 16 25 H 0.05 2.14 7.90 -2.39 -0.02 2.12 16 26 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 27 H 0.06 2.12 8.11 -2.39 -0.02 2.10 16 28 H 0.05 1.62 8.12 -2.38 -0.02 1.60 16 29 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -63.72 251.96 4.73 -58.99 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 1.10 Total: 17.13 kcal Atomic # 6 Polarization: -51.58 SS G_CDS: 2.93 Total: -48.65 kcal Atomic # 7 Polarization: -67.93 SS G_CDS: -1.33 Total: -69.27 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.80 kcal Total: -63.72 4.73 -58.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259570444.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.469 kcal (2) G-P(sol) polarization free energy of solvation -63.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds