Wall clock time and date at job start Mon Mar 30 2020 02:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47154 * 269.99847 * 3 2 1 5 5 H 1.48493 * 109.47010 * 30.00371 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00068 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.30262 * 60.12637 * 9 7 2 11 11 N 1.46643 * 109.30260 * 300.73619 * 9 7 2 12 12 C 1.47146 * 110.28542 * 187.16781 * 11 9 7 13 13 C 1.52903 * 108.53887 * 71.26844 * 12 11 9 14 14 C 1.50710 * 109.92765 * 309.60152 * 13 12 11 15 15 N 1.32585 * 118.48959 * 196.69175 * 14 13 12 16 16 C 1.31940 * 120.36678 * 180.45245 * 15 14 13 17 17 C 1.38407 * 119.81224 * 359.97438 * 16 15 14 18 18 N 1.31917 * 119.86140 * 359.90603 * 17 16 15 19 19 C 1.32649 * 120.39627 * 0.02575 * 18 17 16 20 20 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 21 21 H 1.00905 * 111.00193 * 310.61377 * 11 9 7 22 22 H 1.09005 * 109.62256 * 311.55907 * 12 11 9 23 23 H 1.09000 * 109.63348 * 190.98728 * 12 11 9 24 24 H 1.09001 * 109.39922 * 189.46777 * 13 12 11 25 25 H 1.08995 * 109.32009 * 69.69584 * 13 12 11 26 26 H 1.07997 * 120.09583 * 180.02562 * 16 15 14 27 27 H 1.08000 * 120.06885 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 1 0.6267 -2.5549 -0.8923 11 7 0.3965 -2.5656 1.1894 12 6 -0.2186 -3.8976 1.3021 13 6 0.8656 -4.9021 1.6941 14 6 2.0520 -4.7621 0.7753 15 7 2.9390 -5.7466 0.7333 16 6 3.9962 -5.6589 -0.0512 17 6 4.1798 -4.5331 -0.8351 18 7 3.2966 -3.5541 -0.7957 19 6 2.2325 -3.6414 -0.0085 20 1 -0.4851 0.8401 0.0004 21 1 0.9179 -2.3364 2.0223 22 1 -0.6525 -4.1828 0.3436 23 1 -0.9945 -3.8792 2.0674 24 1 0.4665 -5.9135 1.6182 25 1 1.1785 -4.7125 2.7208 26 1 4.7157 -6.4636 -0.0823 27 1 5.0439 -4.4568 -1.4785 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259588288.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:59 Heat of formation + Delta-G solvation = 29.052346 kcal Electronic energy + Delta-G solvation = -13148.611479 eV Core-core repulsion = 10905.378361 eV Total energy + Delta-G solvation = -2243.233118 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.14846 -38.21345 -35.71409 -34.35994 -31.96781 -31.29753 -27.55318 -25.83162 -25.06579 -23.13737 -21.76737 -18.94824 -18.13919 -17.44244 -16.89588 -16.39931 -15.85308 -15.41968 -15.04218 -14.62925 -14.03909 -13.71604 -13.36838 -13.03833 -12.73643 -12.67438 -12.41551 -12.18196 -11.92647 -11.65293 -11.24988 -10.57954 -9.89440 -9.81380 -8.84637 -7.99436 -6.18138 -0.06120 0.28467 1.44527 1.45596 1.55159 2.47146 2.82819 3.13831 3.20951 3.42416 3.68670 3.93748 3.98561 4.21121 4.30681 4.37483 4.58573 4.65284 4.93560 4.95268 5.10920 5.29041 5.57393 5.78914 6.06994 6.41698 6.55791 6.95098 6.99912 7.07901 7.51714 9.04533 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.038111 B = 0.012383 C = 0.009806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.514489 B = 2260.682962 C = 2854.605287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.036 3.964 3 Si 0.951 3.049 4 H -0.279 1.279 5 H -0.280 1.280 6 H -0.275 1.275 7 C -0.533 4.533 8 H 0.047 0.953 9 C 0.270 3.730 10 H 0.019 0.981 11 N -0.653 5.653 12 C 0.052 3.948 13 C -0.089 4.089 14 C 0.052 3.948 15 N -0.458 5.458 16 C 0.038 3.962 17 C 0.036 3.964 18 N -0.458 5.458 19 C 0.059 3.941 20 H 0.258 0.742 21 H 0.328 0.672 22 H 0.055 0.945 23 H 0.100 0.900 24 H 0.100 0.900 25 H 0.091 0.909 26 H 0.209 0.791 27 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.631 -9.470 2.032 10.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.168 4.168 3 Si 0.777 3.223 4 H -0.205 1.205 5 H -0.205 1.205 6 H -0.200 1.200 7 C -0.572 4.572 8 H 0.066 0.934 9 C 0.160 3.840 10 H 0.037 0.963 11 N -0.280 5.280 12 C -0.078 4.078 13 C -0.129 4.129 14 C -0.086 4.086 15 N -0.174 5.174 16 C -0.124 4.124 17 C -0.126 4.126 18 N -0.173 5.173 19 C -0.080 4.080 20 H 0.067 0.933 21 H 0.145 0.855 22 H 0.074 0.926 23 H 0.118 0.882 24 H 0.118 0.882 25 H 0.109 0.891 26 H 0.226 0.774 27 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 3.834 -9.034 1.741 9.968 hybrid contribution 1.240 0.406 -0.031 1.305 sum 5.074 -8.628 1.710 10.155 Atomic orbital electron populations 1.70215 1.06751 1.26631 1.47776 1.25635 0.95504 1.01642 0.94029 0.85692 0.78610 0.79978 0.77980 1.20488 1.20538 1.20030 1.21000 0.92151 0.90296 1.53727 0.93435 1.17732 0.86590 0.89016 0.90639 0.96323 1.61161 1.36532 1.25336 1.05012 1.22229 0.96274 0.87624 1.01707 1.21132 0.91790 1.02717 0.97239 1.22183 0.97673 0.90597 0.98104 1.68290 1.02639 1.27686 1.18738 1.24321 0.95795 0.99550 0.92725 1.24489 0.99097 0.90262 0.98760 1.68434 1.01955 1.28514 1.18367 1.23584 0.95071 0.96967 0.92401 0.93271 0.85457 0.92592 0.88226 0.88162 0.89095 0.77399 0.78437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.82 12.73 21.45 0.27 -50.55 15 2 C 0.04 1.99 5.38 84.65 0.46 2.45 15 3 Si 0.95 44.32 29.54 68.60 2.03 46.35 15 4 H -0.28 -12.82 7.11 99.48 0.71 -12.11 15 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 15 7 C -0.53 -30.02 8.30 25.60 0.21 -29.81 15 8 H 0.05 2.76 7.30 -2.91 -0.02 2.73 15 9 C 0.27 13.98 2.48 43.44 0.11 14.09 15 10 H 0.02 1.13 8.14 -2.39 -0.02 1.11 15 11 N -0.65 -30.27 5.90 -499.67 -2.95 -33.22 15 12 C 0.05 1.87 6.62 86.22 0.57 2.44 15 13 C -0.09 -2.86 6.07 29.82 0.18 -2.68 15 14 C 0.05 2.02 6.65 42.38 0.28 2.30 15 15 N -0.46 -15.85 10.36 -183.43 -1.90 -17.75 15 16 C 0.04 1.09 11.24 84.72 0.95 2.05 15 17 C 0.04 1.17 11.23 84.72 0.95 2.12 15 18 N -0.46 -20.04 9.44 -183.51 -1.73 -21.77 15 19 C 0.06 2.70 6.22 42.33 0.26 2.96 15 20 H 0.26 14.22 8.31 -92.71 -0.77 13.45 15 21 H 0.33 15.06 8.55 -89.69 -0.77 14.29 15 22 H 0.06 2.10 8.05 -2.38 -0.02 2.09 15 23 H 0.10 3.04 8.14 -2.39 -0.02 3.02 15 24 H 0.10 2.78 8.14 -2.39 -0.02 2.76 15 25 H 0.09 2.71 8.14 -2.39 -0.02 2.69 15 26 H 0.21 3.70 8.06 -2.91 -0.02 3.68 15 27 H 0.20 4.50 8.06 -2.91 -0.02 4.47 15 Total: -1.00 -66.87 234.37 0.11 -66.76 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.42 Total: 14.28 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: 3.98 Total: -4.09 kcal Atomic # 7 Polarization: -116.99 SS G_CDS: -6.31 Total: -123.29 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -66.87 0.11 -66.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259588288.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.808 kcal (2) G-P(sol) polarization free energy of solvation -66.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds