Wall clock time and date at job start Mon Mar 30 2020 02:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99812 * 2 1 4 4 H 1.48500 * 109.47104 * 270.00127 * 3 2 1 5 5 H 1.48508 * 109.46980 * 29.99780 * 3 2 1 6 6 H 1.48498 * 109.47214 * 149.99735 * 3 2 1 7 7 C 1.37872 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99796 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00138 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47229 * 180.02562 * 9 7 2 11 11 C 1.48130 * 111.00173 * 170.00299 * 10 9 7 12 12 C 1.50862 * 105.73111 * 268.01795 * 11 10 9 13 13 C 1.38248 * 132.92710 * 162.64039 * 12 11 10 14 14 N 1.32476 * 118.85939 * 179.97438 * 13 12 11 15 15 C 1.31813 * 120.82443 * 0.04954 * 14 13 12 16 16 N 1.31879 * 121.89138 * 359.94661 * 15 14 13 17 17 C 1.32126 * 120.62062 * 0.02562 * 16 15 14 18 18 C 1.48304 * 111.02637 * 55.03389 * 10 9 7 19 19 H 0.97000 * 120.00171 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.47355 * 60.00556 * 9 7 2 21 21 H 1.09001 * 109.47307 * 300.00759 * 9 7 2 22 22 H 1.09002 * 110.21268 * 148.92911 * 11 10 9 23 23 H 1.08999 * 110.20753 * 27.10417 * 11 10 9 24 24 H 1.08004 * 120.57283 * 359.97438 * 13 12 11 25 25 H 1.08002 * 119.05416 * 179.97438 * 15 14 13 26 26 H 1.08991 * 110.18312 * 332.87923 * 18 10 9 27 27 H 1.08999 * 110.20109 * 211.01034 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 6 1.5156 -4.9041 0.2395 12 6 1.5605 -5.1203 1.7319 13 6 0.8500 -5.9433 2.5859 14 7 1.1235 -5.9089 3.8816 15 6 2.0552 -5.1052 4.3542 16 7 2.7515 -4.3075 3.5681 17 6 2.5335 -4.2887 2.2650 18 6 3.1545 -3.5045 1.1339 19 1 -0.4850 0.8400 -0.0004 20 1 0.6242 -2.5567 -0.8903 21 1 0.6247 -2.5570 0.8896 22 1 2.0371 -5.7120 -0.2738 23 1 0.4820 -4.8470 -0.1018 24 1 0.0851 -6.6029 2.2032 25 1 2.2544 -5.1001 5.4157 26 1 3.2756 -2.4603 1.4220 27 1 4.1183 -3.9348 0.8620 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259613864.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:38 Heat of formation + Delta-G solvation = 63.705669 kcal Electronic energy + Delta-G solvation = -12872.484949 eV Core-core repulsion = 10630.754512 eV Total energy + Delta-G solvation = -2241.730437 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.14091 -37.62710 -33.43169 -33.02700 -31.01974 -28.00799 -27.45612 -24.54466 -22.69949 -22.36039 -20.41385 -17.35429 -16.94718 -16.08116 -15.43303 -14.77741 -14.52013 -13.74628 -13.58609 -13.21662 -12.86768 -12.34752 -12.09834 -11.57663 -11.22229 -10.85002 -10.77756 -10.62785 -10.17123 -10.07541 -9.32972 -8.95457 -8.84704 -8.61761 -7.86183 -6.14705 -4.17767 1.15007 1.32446 3.27329 3.33485 3.36716 3.98198 4.09375 4.32884 4.35606 4.67767 4.79701 4.99619 5.21948 5.33555 5.66766 5.80517 5.98169 6.08533 6.17431 6.38220 6.66153 6.87954 7.12221 7.22591 7.52996 7.73283 7.96100 8.26033 8.33062 8.87929 9.47211 10.96404 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.045836 B = 0.009127 C = 0.008679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.730614 B = 3067.043415 C = 3225.350758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.067 0.933 9 C 0.177 3.823 10 N -0.492 5.492 11 C 0.081 3.919 12 C -0.228 4.228 13 C 0.156 3.844 14 N -0.528 5.528 15 C 0.284 3.716 16 N -0.510 5.510 17 C 0.159 3.841 18 C 0.080 3.920 19 H 0.263 0.737 20 H 0.041 0.959 21 H -0.006 1.006 22 H 0.092 0.908 23 H 0.083 0.917 24 H 0.163 0.837 25 H 0.194 0.806 26 H 0.118 0.882 27 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.969 -9.310 3.394 10.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.560 4.560 8 H 0.086 0.914 9 C 0.052 3.948 10 N -0.213 5.213 11 C -0.048 4.048 12 C -0.234 4.234 13 C -0.009 4.009 14 N -0.241 5.241 15 C -0.004 4.004 16 N -0.224 5.224 17 C 0.010 3.990 18 C -0.049 4.049 19 H 0.073 0.927 20 H 0.059 0.941 21 H 0.012 0.988 22 H 0.110 0.890 23 H 0.101 0.899 24 H 0.180 0.820 25 H 0.210 0.790 26 H 0.136 0.864 27 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.245 -9.139 3.818 10.422 hybrid contribution -0.409 0.903 0.073 0.994 sum 2.836 -8.236 3.891 9.541 Atomic orbital electron populations 1.69954 1.06172 1.27107 1.50013 1.24986 0.94884 0.99509 0.94890 0.86461 0.79767 0.82777 0.78266 1.20415 1.21210 1.19636 1.21127 0.93510 0.89889 1.51467 0.91447 1.20037 0.90657 0.87418 0.96705 1.65515 1.16696 1.02298 1.36786 1.21681 1.00575 0.94913 0.87673 1.23034 0.99810 0.99715 1.00848 1.22499 0.95756 0.94680 0.87941 1.68454 1.17813 1.22899 1.14983 1.24889 0.87785 0.87348 1.00368 1.67672 1.28209 1.21890 1.04661 1.23345 0.91865 0.92324 0.91471 1.22010 0.96610 1.01812 0.84474 0.92696 0.94121 0.98790 0.88998 0.89908 0.81950 0.78967 0.86429 0.88534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.29 55.43 0.74 -25.41 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 3 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 15 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 7 C -0.52 -14.16 8.03 -34.44 -0.28 -14.44 15 8 H 0.07 1.78 6.77 -52.49 -0.36 1.42 15 9 C 0.18 4.47 4.62 -4.98 -0.02 4.44 15 10 N -0.49 -10.15 5.61 -236.38 -1.33 -11.47 15 11 C 0.08 1.37 6.61 -4.22 -0.03 1.34 15 12 C -0.23 -3.93 6.19 -104.39 -0.65 -4.57 15 13 C 0.16 2.39 11.31 -17.27 -0.20 2.20 15 14 N -0.53 -8.49 10.44 -14.61 -0.15 -8.64 15 15 C 0.28 4.52 12.28 -92.07 -1.13 3.39 15 16 N -0.51 -9.39 10.44 -10.71 -0.11 -9.50 15 17 C 0.16 3.01 7.45 -82.16 -0.61 2.40 15 18 C 0.08 1.55 6.25 -4.05 -0.03 1.53 15 19 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15 20 H 0.04 1.09 8.14 -51.93 -0.42 0.66 15 21 H -0.01 -0.16 8.00 -51.93 -0.42 -0.58 15 22 H 0.09 1.31 8.14 -51.93 -0.42 0.88 15 23 H 0.08 1.36 7.80 -51.93 -0.41 0.95 15 24 H 0.16 1.91 8.06 -52.48 -0.42 1.49 15 25 H 0.19 2.29 8.06 -52.49 -0.42 1.87 15 26 H 0.12 2.55 5.92 -51.93 -0.31 2.24 15 27 H 0.10 1.62 8.14 -51.93 -0.42 1.20 15 LS Contribution 236.18 15.07 3.56 3.56 Total: -1.00 -30.51 236.18 -8.08 -38.59 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -2.73 Total: -1.16 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -3.03 Total: -2.15 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: -0.85 Total: -55.03 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -30.51 -8.08 -38.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259613864.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.301 kcal (2) G-P(sol) polarization free energy of solvation -30.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds