Wall clock time and date at job start Mon Mar 30 2020 02:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99812 * 2 1 4 4 H 1.48500 * 109.47104 * 270.00127 * 3 2 1 5 5 H 1.48508 * 109.46980 * 29.99780 * 3 2 1 6 6 H 1.48498 * 109.47214 * 149.99735 * 3 2 1 7 7 C 1.37872 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99796 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00138 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47229 * 180.02562 * 9 7 2 11 11 C 1.48130 * 111.00173 * 170.00299 * 10 9 7 12 12 C 1.50862 * 105.73111 * 268.01795 * 11 10 9 13 13 C 1.38248 * 132.92710 * 162.64039 * 12 11 10 14 14 N 1.32476 * 118.85939 * 179.97438 * 13 12 11 15 15 C 1.31813 * 120.82443 * 0.04954 * 14 13 12 16 16 N 1.31879 * 121.89138 * 359.94661 * 15 14 13 17 17 C 1.32126 * 120.62062 * 0.02562 * 16 15 14 18 18 C 1.48304 * 111.02637 * 55.03389 * 10 9 7 19 19 H 0.97000 * 120.00171 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.47355 * 60.00556 * 9 7 2 21 21 H 1.09001 * 109.47307 * 300.00759 * 9 7 2 22 22 H 1.09002 * 110.21268 * 148.92911 * 11 10 9 23 23 H 1.08999 * 110.20753 * 27.10417 * 11 10 9 24 24 H 1.08004 * 120.57283 * 359.97438 * 13 12 11 25 25 H 1.08002 * 119.05416 * 179.97438 * 15 14 13 26 26 H 1.08991 * 110.18312 * 332.87923 * 18 10 9 27 27 H 1.08999 * 110.20109 * 211.01034 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 6 1.5156 -4.9041 0.2395 12 6 1.5605 -5.1203 1.7319 13 6 0.8500 -5.9433 2.5859 14 7 1.1235 -5.9089 3.8816 15 6 2.0552 -5.1052 4.3542 16 7 2.7515 -4.3075 3.5681 17 6 2.5335 -4.2887 2.2650 18 6 3.1545 -3.5045 1.1339 19 1 -0.4850 0.8400 -0.0004 20 1 0.6242 -2.5567 -0.8903 21 1 0.6247 -2.5570 0.8896 22 1 2.0371 -5.7120 -0.2738 23 1 0.4820 -4.8470 -0.1018 24 1 0.0851 -6.6029 2.2032 25 1 2.2544 -5.1001 5.4157 26 1 3.2756 -2.4603 1.4220 27 1 4.1183 -3.9348 0.8620 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259613864.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:37 Heat of formation + Delta-G solvation = 42.088840 kcal Electronic energy + Delta-G solvation = -12873.422325 eV Core-core repulsion = 10630.754512 eV Total energy + Delta-G solvation = -2242.667813 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.47823 -39.13313 -35.09195 -34.69010 -32.61670 -29.44670 -29.26832 -26.21435 -24.25612 -23.77099 -22.04471 -18.82871 -18.59673 -17.64614 -17.01795 -16.51250 -16.00827 -15.35037 -15.03702 -14.60143 -14.45023 -14.03345 -13.76777 -13.15068 -13.00610 -12.69234 -12.58149 -12.06748 -11.96692 -11.54851 -11.33086 -10.70354 -10.28349 -10.19525 -9.58187 -8.26914 -6.36856 -0.14679 0.02034 1.40990 1.41842 1.52732 2.37270 2.67892 2.77478 3.07061 3.14969 3.17578 3.50342 3.69747 3.98913 4.36169 4.51838 4.60488 4.71256 4.81337 4.89227 5.04987 5.16444 5.37707 5.52775 5.77134 5.90072 6.04179 6.31423 6.77523 7.03767 7.32924 8.85007 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.045836 B = 0.009127 C = 0.008679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.730614 B = 3067.043415 C = 3225.350758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.534 4.534 8 H 0.071 0.929 9 C 0.195 3.805 10 N -0.497 5.497 11 C 0.084 3.916 12 C -0.237 4.237 13 C 0.163 3.837 14 N -0.531 5.531 15 C 0.282 3.718 16 N -0.532 5.532 17 C 0.133 3.867 18 C 0.084 3.916 19 H 0.265 0.735 20 H 0.018 0.982 21 H -0.039 1.039 22 H 0.126 0.874 23 H 0.085 0.915 24 H 0.201 0.799 25 H 0.229 0.771 26 H 0.088 0.912 27 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.596 -10.137 3.753 11.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.792 3.208 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.572 4.572 8 H 0.089 0.911 9 C 0.069 3.931 10 N -0.218 5.218 11 C -0.045 4.045 12 C -0.243 4.243 13 C -0.001 4.001 14 N -0.245 5.245 15 C -0.005 4.005 16 N -0.247 5.247 17 C -0.015 4.015 18 C -0.045 4.045 19 H 0.074 0.926 20 H 0.037 0.963 21 H -0.021 1.021 22 H 0.144 0.856 23 H 0.103 0.897 24 H 0.218 0.782 25 H 0.245 0.755 26 H 0.107 0.893 27 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.893 -9.983 4.177 11.501 hybrid contribution -0.619 1.056 0.015 1.225 sum 3.274 -8.927 4.192 10.392 Atomic orbital electron populations 1.70078 1.07811 1.28061 1.51265 1.25902 0.95707 1.03296 0.94478 0.85397 0.78591 0.78144 0.78647 1.19451 1.21060 1.18683 1.21506 0.93925 0.90987 1.50793 0.91054 1.19637 0.90642 0.88904 0.93932 1.65442 1.16106 1.02471 1.37778 1.21779 1.00915 0.93704 0.88109 1.23096 0.99943 1.00264 1.00963 1.23115 0.95465 0.94103 0.87457 1.68583 1.17783 1.22905 1.15240 1.25635 0.86972 0.86276 1.01644 1.67679 1.29386 1.23029 1.04640 1.23292 0.93032 0.93315 0.91907 1.21908 0.97416 1.00528 0.84684 0.92600 0.96345 1.02149 0.85632 0.89703 0.78179 0.75507 0.89347 0.86021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.60 13.29 21.45 0.28 -55.31 15 2 C 0.00 0.28 5.46 84.65 0.46 0.74 15 3 Si 0.97 43.66 29.54 68.60 2.03 45.68 15 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 15 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 15 6 H -0.26 -11.36 7.11 99.48 0.71 -10.65 15 7 C -0.53 -29.46 8.03 25.60 0.21 -29.26 15 8 H 0.07 3.79 6.77 -2.91 -0.02 3.77 15 9 C 0.20 10.10 4.62 85.56 0.40 10.50 15 10 N -0.50 -20.42 5.61 -901.77 -5.06 -25.48 15 11 C 0.08 2.70 6.61 85.37 0.56 3.27 15 12 C -0.24 -7.79 6.19 -19.71 -0.12 -7.91 15 13 C 0.16 4.61 11.31 84.60 0.96 5.56 15 14 N -0.53 -15.79 10.44 -200.15 -2.09 -17.88 15 15 C 0.28 8.41 12.28 180.85 2.22 10.63 15 16 N -0.53 -19.11 10.44 -187.78 -1.96 -21.07 15 17 C 0.13 4.95 7.45 42.71 0.32 5.27 15 18 C 0.08 3.23 6.25 85.38 0.53 3.76 15 19 H 0.27 14.90 8.31 -92.71 -0.77 14.13 15 20 H 0.02 1.02 8.14 -2.39 -0.02 1.00 15 21 H -0.04 -2.26 8.00 -2.39 -0.02 -2.28 15 22 H 0.13 3.20 8.14 -2.39 -0.02 3.19 15 23 H 0.08 2.69 7.80 -2.39 -0.02 2.67 15 24 H 0.20 3.96 8.06 -2.91 -0.02 3.94 15 25 H 0.23 4.81 8.06 -2.91 -0.02 4.78 15 26 H 0.09 3.91 5.92 -2.39 -0.01 3.90 15 27 H 0.12 3.97 8.14 -2.39 -0.02 3.95 15 Total: -1.00 -65.97 236.18 -0.09 -66.07 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: 1.17 Total: 5.44 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: 5.53 Total: 2.56 kcal Atomic # 7 Polarization: -110.92 SS G_CDS: -8.83 Total: -119.74 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -65.97 -0.09 -66.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259613864.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.155 kcal (2) G-P(sol) polarization free energy of solvation -65.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds