Wall clock time and date at job start Mon Mar 30 2020 02:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38234 * 119.99792 * 2 1 4 4 C 1.38233 * 119.99974 * 180.02562 * 3 2 1 5 5 C 1.38234 * 119.99948 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00090 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.47014 * 340.00763 * 6 5 4 8 8 N 1.46894 * 109.47318 * 219.99904 * 6 5 4 9 9 C 1.53002 * 109.46676 * 99.99926 * 6 5 4 10 10 C 1.50706 * 109.47153 * 184.99784 * 9 6 5 11 11 H 1.07998 * 119.99503 * 0.02562 * 10 9 6 12 12 C 1.37871 * 120.00434 * 180.02562 * 10 9 6 13 13 N 1.31516 * 119.99826 * 359.72891 * 12 10 9 14 14 Si 1.86800 * 120.00406 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47364 * 179.72558 * 14 12 10 16 16 H 1.48508 * 109.46883 * 299.72681 * 14 12 10 17 17 H 1.48497 * 109.46870 * 59.72491 * 14 12 10 18 18 C 1.38236 * 120.00077 * 0.25438 * 5 4 3 19 19 C 1.38234 * 120.00130 * 180.02562 * 2 1 3 20 20 H 1.08996 * 109.47504 * 90.00137 * 1 2 3 21 21 H 1.09009 * 109.47022 * 209.99999 * 1 2 3 22 22 H 1.09003 * 109.47420 * 329.99919 * 1 2 3 23 23 H 1.08000 * 119.99819 * 359.97438 * 3 2 1 24 24 H 1.08001 * 119.99750 * 179.97438 * 4 3 2 25 25 H 1.00897 * 111.00410 * 300.00429 * 8 6 5 26 26 H 1.00904 * 110.99735 * 63.96143 * 8 6 5 27 27 H 1.09004 * 109.47178 * 65.00574 * 9 6 5 28 28 H 1.08993 * 109.47411 * 305.00257 * 9 6 5 29 29 H 0.97000 * 120.00236 * 0.27947 * 13 12 10 30 30 H 1.07998 * 120.00380 * 179.72743 * 18 5 4 31 31 H 1.08003 * 119.99727 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 5.7787 0.0001 -0.0017 7 1 6.1417 0.9657 -0.3538 8 7 6.2677 -1.0612 -0.8918 9 6 6.2897 -0.2497 1.4187 10 6 7.7917 -0.1282 1.4408 11 1 8.3280 0.1045 0.5327 12 6 8.4811 -0.3139 2.6203 13 7 7.8275 -0.5919 3.7271 14 14 10.3427 -0.1625 2.6479 15 1 10.8382 -0.3991 4.0276 16 1 10.9348 -1.1685 1.7298 17 1 10.7350 1.2005 2.2080 18 6 3.5805 -1.1971 -0.0053 19 6 2.1982 -1.1971 -0.0005 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8901 0.5139 22 1 -0.3634 0.8900 0.5138 23 1 1.6581 2.1324 -0.0004 24 1 4.1204 2.1326 -0.0010 25 1 5.9444 -1.9669 -0.5864 26 1 5.9976 -0.8843 -1.8478 27 1 6.0016 -1.2515 1.7375 28 1 5.8555 0.4859 2.0957 29 1 6.8608 -0.6703 3.7129 30 1 4.1205 -2.1324 -0.0098 31 1 1.6582 -2.1324 -0.0005 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259663332.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:07 Heat of formation + Delta-G solvation = -18.429586 kcal Electronic energy + Delta-G solvation = -12761.777957 eV Core-core repulsion = 10620.026211 eV Total energy + Delta-G solvation = -2141.751746 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.60486 -37.34521 -34.89950 -32.76113 -31.86887 -29.98310 -27.90822 -25.45287 -23.80087 -22.97766 -21.15426 -18.93605 -17.35623 -17.02311 -16.19896 -15.86413 -15.61070 -15.03728 -14.85703 -14.61022 -14.32922 -13.71962 -13.58854 -13.13620 -12.91121 -12.78668 -12.36320 -12.18722 -11.99180 -11.87249 -11.64336 -10.75263 -10.51119 -9.90033 -9.61101 -9.32071 -8.61329 -6.28372 0.37045 0.43283 1.53954 1.63357 1.82529 2.60697 2.77809 3.21403 3.79467 3.84670 3.87876 4.07105 4.08536 4.30666 4.53627 4.55313 4.75798 4.79258 4.82984 4.93215 5.11492 5.13170 5.25117 5.35457 5.45584 5.63563 5.69178 6.04362 6.09331 6.27772 6.35161 6.62569 6.72955 7.50475 8.78812 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.060148 B = 0.006956 C = 0.006783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.404820 B = 4024.497359 C = 4126.728547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.100 4.100 3 C -0.123 4.123 4 C -0.128 4.128 5 C -0.131 4.131 6 C 0.152 3.848 7 H 0.067 0.933 8 N -0.827 5.827 9 C 0.031 3.969 10 C -0.585 4.585 11 H 0.052 0.948 12 C -0.047 4.047 13 N -0.946 5.946 14 Si 1.120 2.880 15 H -0.286 1.286 16 H -0.272 1.272 17 H -0.270 1.270 18 C -0.129 4.129 19 C -0.124 4.124 20 H 0.082 0.918 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.144 0.856 24 H 0.121 0.879 25 H 0.337 0.663 26 H 0.341 0.659 27 H -0.015 1.015 28 H -0.016 1.016 29 H 0.251 0.749 30 H 0.116 0.884 31 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.213 1.048 -9.526 16.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.101 4.101 3 C -0.140 4.140 4 C -0.147 4.147 5 C -0.133 4.133 6 C 0.040 3.960 7 H 0.085 0.915 8 N -0.357 5.357 9 C -0.006 4.006 10 C -0.623 4.623 11 H 0.071 0.929 12 C -0.242 4.242 13 N -0.585 5.585 14 Si 0.941 3.059 15 H -0.211 1.211 16 H -0.197 1.197 17 H -0.195 1.195 18 C -0.147 4.147 19 C -0.141 4.141 20 H 0.101 0.899 21 H 0.093 0.907 22 H 0.094 0.906 23 H 0.162 0.838 24 H 0.139 0.861 25 H 0.151 0.849 26 H 0.154 0.846 27 H 0.003 0.997 28 H 0.002 0.998 29 H 0.060 0.940 30 H 0.134 0.866 31 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.147 1.186 -8.337 13.970 hybrid contribution -2.219 -0.152 -0.854 2.382 sum -13.366 1.034 -9.191 16.254 Atomic orbital electron populations 1.20809 0.88647 1.03667 1.03276 1.20315 0.97865 0.92628 0.99249 1.21313 0.93363 0.98910 1.00459 1.21239 0.95251 0.97443 1.00726 1.21117 0.97565 0.94489 1.00106 1.20171 0.86760 0.95116 0.93954 0.91506 1.58723 1.67316 1.04486 1.05131 1.19084 0.96019 0.93681 0.91833 1.22306 0.92854 1.50248 0.96911 0.92945 1.27410 1.11320 0.93444 0.92073 1.70931 1.09311 1.48468 1.29757 0.82898 0.69258 0.77742 0.75969 1.21119 1.19687 1.19528 1.21058 0.95203 0.97240 1.01241 1.21277 0.93318 0.98921 1.00626 0.89904 0.90714 0.90599 0.83789 0.86110 0.84910 0.84578 0.99672 0.99827 0.94017 0.86604 0.83996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 10.01 71.24 0.71 -1.07 16 2 C -0.10 -2.50 5.88 -19.87 -0.12 -2.62 16 3 C -0.12 -3.30 9.70 22.27 0.22 -3.08 16 4 C -0.13 -4.21 9.67 22.27 0.22 -4.00 16 5 C -0.13 -4.80 4.95 -19.87 -0.10 -4.90 16 6 C 0.15 6.52 2.93 44.17 0.13 6.65 16 7 H 0.07 2.95 8.00 -2.39 -0.02 2.93 16 8 N -0.83 -31.92 8.77 -171.81 -1.51 -33.43 16 9 C 0.03 1.69 3.91 29.85 0.12 1.80 16 10 C -0.59 -34.67 8.84 25.60 0.23 -34.45 16 11 H 0.05 3.09 7.74 -2.91 -0.02 3.06 16 12 C -0.05 -2.83 5.46 84.65 0.46 -2.36 16 13 N -0.95 -61.05 13.65 21.45 0.29 -60.76 16 14 Si 1.12 52.65 29.90 68.60 2.05 54.70 16 15 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 16 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 18 C -0.13 -4.25 9.30 22.27 0.21 -4.04 16 19 C -0.12 -3.36 9.70 22.27 0.22 -3.15 16 20 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 21 H 0.07 1.10 8.09 -2.38 -0.02 1.08 16 22 H 0.08 1.10 8.09 -2.39 -0.02 1.08 16 23 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 24 H 0.12 3.82 8.04 -2.91 -0.02 3.79 16 25 H 0.34 12.47 7.34 -89.70 -0.66 11.81 16 26 H 0.34 10.94 9.06 -89.69 -0.81 10.13 16 27 H -0.01 -0.87 8.01 -2.39 -0.02 -0.89 16 28 H -0.02 -0.97 8.00 -2.39 -0.02 -0.99 16 29 H 0.25 16.47 7.22 -92.71 -0.67 15.80 16 30 H 0.12 3.72 6.65 -2.91 -0.02 3.70 16 31 H 0.14 3.05 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -69.90 264.50 2.88 -67.02 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: -0.25 Total: 23.68 kcal Atomic # 6 Polarization: -53.50 SS G_CDS: 2.29 Total: -51.21 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -1.21 Total: -94.19 kcal Atomic # 14 Polarization: 52.65 SS G_CDS: 2.05 Total: 54.70 kcal Total: -69.90 2.88 -67.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259663332.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.590 kcal (2) G-P(sol) polarization free energy of solvation -69.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds