Wall clock time and date at job start Mon Mar 30 2020 02:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00106 * 2 1 4 4 H 1.48501 * 109.46734 * 269.99684 * 3 2 1 5 5 H 1.48499 * 109.47147 * 29.99638 * 3 2 1 6 6 H 1.48495 * 109.47039 * 150.00313 * 3 2 1 7 7 C 1.37875 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00670 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99582 * 359.97438 * 7 2 1 10 10 H 1.08996 * 108.73786 * 61.70310 * 9 7 2 11 11 C 1.54291 * 108.68004 * 303.44692 * 9 7 2 12 12 C 1.54067 * 112.28675 * 197.45249 * 11 9 7 13 13 N 1.44273 * 111.98335 * 318.91308 * 12 11 9 14 14 C 1.47804 * 109.46167 * 96.43648 * 13 12 11 15 15 C 1.45860 * 112.91919 * 276.74124 * 14 13 12 16 16 C 1.50463 * 108.76792 * 180.02562 * 9 7 2 17 17 F 1.39904 * 109.57585 * 93.14515 * 16 9 7 18 18 F 1.39902 * 109.67970 * 332.82814 * 16 9 7 19 19 H 0.97001 * 119.99757 * 0.02562 * 1 2 3 20 20 H 1.09003 * 108.91513 * 318.17134 * 11 9 7 21 21 H 1.08997 * 108.91787 * 76.82048 * 11 9 7 22 22 H 1.09003 * 108.97680 * 198.27042 * 12 11 9 23 23 H 1.08996 * 108.98030 * 79.55990 * 12 11 9 24 24 H 1.00901 * 110.99820 * 333.56704 * 13 12 11 25 25 H 1.08999 * 108.79196 * 37.63055 * 14 13 12 26 26 H 1.08997 * 108.79207 * 155.85561 * 14 13 12 27 27 H 1.08998 * 109.05514 * 181.87075 * 15 14 13 28 28 H 1.08996 * 109.05460 * 300.78246 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6518 -2.5575 -0.9092 11 6 0.3067 -2.5245 1.2194 12 6 -0.1784 -3.9482 1.5533 13 7 -0.5024 -4.7008 0.3659 14 6 0.6528 -5.5401 -0.0158 15 6 1.6487 -4.8147 -0.7965 16 6 2.2426 -3.6308 -0.0005 17 9 2.4971 -4.0310 1.3157 18 9 3.4345 -3.2127 -0.6021 19 1 -0.4850 0.8401 -0.0004 20 1 0.8341 -2.1192 2.0830 21 1 -0.5598 -1.8977 1.0087 22 1 -1.0650 -3.8818 2.1839 23 1 0.6060 -4.4706 2.1010 24 1 -0.7688 -4.0872 -0.3896 25 1 1.1253 -5.9200 0.8901 26 1 0.2939 -6.3854 -0.6029 27 1 2.4523 -5.4980 -1.0710 28 1 1.1809 -4.4344 -1.7046 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259695009.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:20 Heat of formation + Delta-G solvation = -103.889733 kcal Electronic energy + Delta-G solvation = -14607.690201 eV Core-core repulsion = 11908.003095 eV Total energy + Delta-G solvation = -2699.687106 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.02894 -45.98851 -37.75541 -33.73023 -31.63338 -30.59991 -26.15712 -24.42944 -22.83222 -20.80132 -19.27540 -17.04242 -16.22796 -16.01225 -15.44162 -14.52143 -14.30218 -13.81538 -13.60266 -13.00878 -12.83282 -12.43831 -12.10631 -11.87432 -11.66026 -11.29185 -10.98797 -10.89213 -10.78141 -10.26005 -10.04022 -9.84521 -9.25996 -9.00131 -8.52303 -7.88825 -6.12793 -4.18620 3.26319 3.32761 3.38088 4.33891 4.48303 4.84938 5.10146 5.21255 5.37691 5.46713 5.78987 5.86511 6.00401 6.12808 6.20734 6.31037 6.38395 6.51852 6.82594 7.11332 7.35044 7.66762 7.72055 7.87623 7.96237 8.14975 8.83238 9.46376 10.93636 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.043532 B = 0.013780 C = 0.011776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.047443 B = 2031.399734 C = 2377.227574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.069 0.931 9 C 0.005 3.995 10 H 0.046 0.954 11 C -0.125 4.125 12 C 0.035 3.965 13 N -0.673 5.673 14 C 0.053 3.947 15 C -0.189 4.189 16 C 0.296 3.704 17 F -0.210 7.210 18 F -0.202 7.202 19 H 0.262 0.738 20 H 0.052 0.948 21 H 0.094 0.906 22 H 0.058 0.942 23 H 0.063 0.937 24 H 0.344 0.656 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.456 -7.274 -0.269 7.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.087 0.913 9 C -0.014 4.014 10 H 0.063 0.937 11 C -0.165 4.165 12 C -0.095 4.095 13 N -0.303 5.303 14 C -0.077 4.077 15 C -0.229 4.229 16 C 0.260 3.740 17 F -0.191 7.191 18 F -0.183 7.183 19 H 0.072 0.928 20 H 0.071 0.929 21 H 0.112 0.888 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.163 0.837 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.012 -7.661 0.107 7.662 hybrid contribution 1.289 1.679 -0.360 2.147 sum 1.277 -5.982 -0.253 6.122 Atomic orbital electron populations 1.69899 1.05890 1.26806 1.50020 1.24932 0.94919 0.99322 0.94515 0.86474 0.79886 0.82810 0.78215 1.20546 1.21121 1.19779 1.21175 0.93622 0.89585 1.51752 0.91315 1.19510 0.92464 0.92161 0.97266 0.93655 1.22477 1.01304 0.94535 0.98180 1.22251 0.99635 0.94962 0.92693 1.61136 1.33468 1.27182 1.08503 1.20837 0.90456 0.96540 0.99871 1.22258 1.01292 0.98167 1.01151 1.21139 0.83034 0.94800 0.75049 1.92849 1.95106 1.92005 1.39149 1.92899 1.50299 1.91570 1.83487 0.92796 0.92926 0.88759 0.92397 0.91896 0.83715 0.91026 0.90805 0.90458 0.89299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.50 11.27 55.43 0.62 -23.88 15 2 C 0.07 1.78 5.28 -17.82 -0.09 1.69 15 3 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 15 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 15 6 H -0.27 -6.51 7.11 56.52 0.40 -6.10 15 7 C -0.52 -14.39 8.04 -34.44 -0.28 -14.67 15 8 H 0.07 1.95 6.59 -52.49 -0.35 1.60 15 9 C 0.01 0.12 1.58 -92.36 -0.15 -0.02 15 10 H 0.05 1.13 6.79 -51.93 -0.35 0.78 15 11 C -0.13 -2.88 4.23 -25.50 -0.11 -2.99 15 12 C 0.03 0.66 5.98 -4.67 -0.03 0.63 15 13 N -0.67 -11.76 6.91 -118.15 -0.82 -12.58 15 14 C 0.05 0.83 5.80 -6.71 -0.04 0.79 15 15 C -0.19 -3.21 5.01 -29.30 -0.15 -3.36 15 16 C 0.30 6.41 1.87 -27.19 -0.05 6.36 15 17 F -0.21 -4.60 13.35 2.25 0.03 -4.57 15 18 F -0.20 -4.72 15.18 2.25 0.03 -4.69 15 19 H 0.26 6.93 8.31 -40.82 -0.34 6.59 15 20 H 0.05 1.30 7.97 -51.93 -0.41 0.88 15 21 H 0.09 2.36 6.46 -51.93 -0.34 2.02 15 22 H 0.06 1.06 8.14 -51.93 -0.42 0.63 15 23 H 0.06 1.20 5.43 -51.93 -0.28 0.92 15 24 H 0.34 6.21 7.35 -39.29 -0.29 5.92 15 25 H 0.07 1.14 6.65 -51.93 -0.35 0.80 15 26 H 0.07 0.99 8.14 -51.93 -0.42 0.56 15 27 H 0.08 1.16 8.14 -51.93 -0.42 0.74 15 28 H 0.09 1.47 7.59 -51.93 -0.39 1.07 15 LS Contribution 222.93 15.07 3.36 3.36 Total: -1.00 -27.79 222.93 -5.84 -33.63 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -3.16 Total: 3.96 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -0.89 Total: -11.58 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: -0.19 Total: -36.46 kcal Atomic # 9 Polarization: -9.32 SS G_CDS: 0.06 Total: -9.26 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -27.79 -5.84 -33.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259695009.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.257 kcal (2) G-P(sol) polarization free energy of solvation -27.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds