Wall clock time and date at job start Mon Mar 30 2020 02:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00106 * 2 1 4 4 H 1.48501 * 109.46734 * 269.99684 * 3 2 1 5 5 H 1.48499 * 109.47147 * 29.99638 * 3 2 1 6 6 H 1.48495 * 109.47039 * 150.00313 * 3 2 1 7 7 C 1.37875 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00670 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99582 * 359.97438 * 7 2 1 10 10 H 1.08996 * 108.73786 * 61.70310 * 9 7 2 11 11 C 1.54291 * 108.68004 * 303.44692 * 9 7 2 12 12 C 1.54067 * 112.28675 * 197.45249 * 11 9 7 13 13 N 1.44273 * 111.98335 * 318.91308 * 12 11 9 14 14 C 1.47804 * 109.46167 * 96.43648 * 13 12 11 15 15 C 1.45860 * 112.91919 * 276.74124 * 14 13 12 16 16 C 1.50463 * 108.76792 * 180.02562 * 9 7 2 17 17 F 1.39904 * 109.57585 * 93.14515 * 16 9 7 18 18 F 1.39902 * 109.67970 * 332.82814 * 16 9 7 19 19 H 0.97001 * 119.99757 * 0.02562 * 1 2 3 20 20 H 1.09003 * 108.91513 * 318.17134 * 11 9 7 21 21 H 1.08997 * 108.91787 * 76.82048 * 11 9 7 22 22 H 1.09003 * 108.97680 * 198.27042 * 12 11 9 23 23 H 1.08996 * 108.98030 * 79.55990 * 12 11 9 24 24 H 1.00901 * 110.99820 * 333.56704 * 13 12 11 25 25 H 1.08999 * 108.79196 * 37.63055 * 14 13 12 26 26 H 1.08997 * 108.79207 * 155.85561 * 14 13 12 27 27 H 1.08998 * 109.05514 * 181.87075 * 15 14 13 28 28 H 1.08996 * 109.05460 * 300.78246 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6518 -2.5575 -0.9092 11 6 0.3067 -2.5245 1.2194 12 6 -0.1784 -3.9482 1.5533 13 7 -0.5024 -4.7008 0.3659 14 6 0.6528 -5.5401 -0.0158 15 6 1.6487 -4.8147 -0.7965 16 6 2.2426 -3.6308 -0.0005 17 9 2.4971 -4.0310 1.3157 18 9 3.4345 -3.2127 -0.6021 19 1 -0.4850 0.8401 -0.0004 20 1 0.8341 -2.1192 2.0830 21 1 -0.5598 -1.8977 1.0087 22 1 -1.0650 -3.8818 2.1839 23 1 0.6060 -4.4706 2.1010 24 1 -0.7688 -4.0872 -0.3896 25 1 1.1253 -5.9200 0.8901 26 1 0.2939 -6.3854 -0.6029 27 1 2.4523 -5.4980 -1.0710 28 1 1.1809 -4.4344 -1.7046 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259695009.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:20 Heat of formation + Delta-G solvation = -122.414520 kcal Electronic energy + Delta-G solvation = -14608.493496 eV Core-core repulsion = 11908.003095 eV Total energy + Delta-G solvation = -2700.490401 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.77711 -47.75597 -39.28364 -35.64210 -33.14711 -32.49271 -27.99139 -26.10482 -24.57289 -22.26354 -21.06005 -18.90296 -18.03072 -17.73083 -17.20927 -16.33964 -15.91591 -15.39196 -15.13376 -14.72741 -14.59692 -14.14058 -13.88619 -13.58306 -13.27143 -13.06287 -12.88419 -12.70800 -12.28500 -12.12645 -11.81063 -11.56967 -11.09148 -10.88089 -10.57277 -9.36842 -8.20963 -6.33935 1.36218 1.37683 1.48015 2.36114 2.93345 3.05938 3.48126 3.62988 3.75404 3.89973 4.20147 4.41800 4.50699 4.65657 4.69966 4.78241 4.91823 4.98127 5.09101 5.35754 5.49091 5.68612 5.86776 6.13810 6.16616 6.47276 6.70824 7.33481 8.83355 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.043532 B = 0.013780 C = 0.011776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.047443 B = 2031.399734 C = 2377.227574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.023 3.977 3 Si 0.954 3.046 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.550 4.550 8 H 0.052 0.948 9 C 0.003 3.997 10 H 0.035 0.965 11 C -0.113 4.113 12 C 0.048 3.952 13 N -0.669 5.669 14 C 0.051 3.949 15 C -0.176 4.176 16 C 0.285 3.715 17 F -0.213 7.213 18 F -0.215 7.215 19 H 0.265 0.735 20 H 0.024 0.976 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.342 0.658 25 H 0.073 0.927 26 H 0.111 0.889 27 H 0.104 0.896 28 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.370 -8.325 -0.638 8.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.177 4.177 3 Si 0.780 3.220 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.588 4.588 8 H 0.070 0.930 9 C -0.016 4.016 10 H 0.053 0.947 11 C -0.153 4.153 12 C -0.083 4.083 13 N -0.298 5.298 14 C -0.078 4.078 15 C -0.215 4.215 16 C 0.249 3.751 17 F -0.194 7.194 18 F -0.196 7.196 19 H 0.074 0.926 20 H 0.043 0.957 21 H 0.089 0.911 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.160 0.840 25 H 0.092 0.908 26 H 0.129 0.871 27 H 0.123 0.877 28 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.101 -8.724 -0.266 8.729 hybrid contribution 1.324 2.023 -0.243 2.430 sum 1.223 -6.701 -0.508 6.830 Atomic orbital electron populations 1.69993 1.06714 1.27533 1.50065 1.25615 0.95785 1.02139 0.94185 0.85612 0.78594 0.79408 0.78435 1.19799 1.20267 1.20094 1.21436 0.93203 0.91711 1.52459 0.92997 1.19473 0.92899 0.92121 0.97074 0.94709 1.22279 0.99680 0.96811 0.96515 1.22091 0.99964 0.92495 0.93736 1.61184 1.34254 1.26517 1.07811 1.20997 0.89570 0.96820 1.00418 1.22219 1.02246 0.96541 1.00534 1.21400 0.82029 0.96026 0.75649 1.92836 1.95085 1.91918 1.39610 1.92867 1.51110 1.91990 1.83669 0.92620 0.95665 0.91130 0.91377 0.91573 0.84006 0.90837 0.87118 0.87741 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.39 11.27 21.45 0.24 -50.15 15 2 C 0.02 1.28 5.28 84.65 0.45 1.72 15 3 Si 0.95 43.99 29.54 68.60 2.03 46.02 15 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 15 5 H -0.28 -12.35 7.11 99.48 0.71 -11.65 15 6 H -0.28 -12.75 7.11 99.48 0.71 -12.05 15 7 C -0.55 -30.76 8.04 25.60 0.21 -30.56 15 8 H 0.05 3.01 6.59 -2.91 -0.02 2.99 15 9 C 0.00 0.17 1.58 -11.92 -0.02 0.15 15 10 H 0.03 1.75 6.79 -2.39 -0.02 1.74 15 11 C -0.11 -5.24 4.23 31.39 0.13 -5.11 15 12 C 0.05 1.76 5.98 87.15 0.52 2.28 15 13 N -0.67 -21.77 6.91 -527.70 -3.65 -25.42 15 14 C 0.05 1.43 5.80 83.94 0.49 1.91 15 15 C -0.18 -5.49 5.01 28.93 0.15 -5.35 15 16 C 0.28 12.10 1.87 30.30 0.06 12.15 15 17 F -0.21 -9.16 13.35 44.97 0.60 -8.55 15 18 F -0.22 -10.02 15.18 44.97 0.68 -9.33 15 19 H 0.26 14.02 8.31 -92.71 -0.77 13.25 15 20 H 0.02 1.26 7.97 -2.39 -0.02 1.24 15 21 H 0.07 3.59 6.46 -2.39 -0.02 3.57 15 22 H 0.07 2.38 8.14 -2.39 -0.02 2.36 15 23 H 0.07 2.42 5.43 -2.39 -0.01 2.41 15 24 H 0.34 11.71 7.35 -89.69 -0.66 11.05 15 25 H 0.07 2.08 6.65 -2.39 -0.02 2.07 15 26 H 0.11 2.40 8.14 -2.39 -0.02 2.38 15 27 H 0.10 2.75 8.14 -2.39 -0.02 2.73 15 28 H 0.09 2.87 7.59 -2.39 -0.02 2.85 15 Total: -1.00 -59.19 222.93 2.40 -56.79 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.52 Total: 13.45 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: 1.98 Total: -22.80 kcal Atomic # 7 Polarization: -72.16 SS G_CDS: -3.40 Total: -75.56 kcal Atomic # 9 Polarization: -19.17 SS G_CDS: 1.28 Total: -17.89 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -59.19 2.40 -56.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259695009.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.624 kcal (2) G-P(sol) polarization free energy of solvation -59.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds