Wall clock time and date at job start Mon Mar 30 2020 02:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40783 * 126.28327 * 2 1 4 4 C 1.35099 * 107.41326 * 179.83166 * 3 2 1 5 5 N 1.36200 * 108.35741 * 0.52270 * 4 3 2 6 6 C 1.34692 * 126.28147 * 180.31681 * 2 1 3 7 7 C 1.50704 * 125.83292 * 359.88113 * 6 2 1 8 8 C 1.50699 * 109.46983 * 270.03173 * 7 6 2 9 9 H 1.07995 * 120.00378 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99570 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00015 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99970 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47024 * 359.97438 * 12 10 8 14 14 H 1.48491 * 109.47400 * 119.99675 * 12 10 8 15 15 H 1.48505 * 109.46823 * 239.99962 * 12 10 8 16 16 C 1.47233 * 110.71666 * 179.49286 * 5 4 3 17 17 C 1.54314 * 105.64834 * 17.29167 * 16 5 4 18 18 C 1.51479 * 141.72193 * 180.25024 * 4 3 2 19 19 H 1.09002 * 109.47152 * 269.68676 * 1 2 3 20 20 H 1.09001 * 109.46980 * 149.68776 * 1 2 3 21 21 H 1.09004 * 109.47113 * 29.68757 * 1 2 3 22 22 H 1.08003 * 126.28969 * 359.94626 * 3 2 1 23 23 H 1.09003 * 109.46553 * 30.02600 * 7 6 2 24 24 H 1.08995 * 109.46926 * 150.02873 * 7 6 2 25 25 H 0.97004 * 119.99437 * 179.97438 * 11 10 8 26 26 H 1.09001 * 110.21322 * 136.34008 * 16 5 4 27 27 H 1.09009 * 110.21272 * 258.24769 * 16 5 4 28 28 H 1.09007 * 110.92837 * 92.10367 * 17 16 5 29 29 H 1.09003 * 110.93597 * 215.72423 * 17 16 5 30 30 H 1.08996 * 110.47711 * 44.93915 * 18 4 3 31 31 H 1.09003 * 110.58021 * 282.39123 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3402 1.1349 0.0000 4 6 3.6185 0.6979 0.0038 5 7 3.6064 -0.6640 -0.0057 6 6 2.3041 -1.0858 -0.0060 7 6 1.8412 -2.5200 -0.0114 8 6 1.6886 -3.0038 1.4076 9 1 1.9055 -2.3395 2.2310 10 6 1.2731 -4.2951 1.6546 11 7 1.0095 -5.1043 0.6519 12 14 1.0831 -4.8948 3.4136 13 1 1.4384 -3.7994 4.3511 14 1 -0.3237 -5.3092 3.6461 15 1 1.9844 -6.0529 3.6417 16 6 4.9788 -1.1970 -0.0142 17 6 5.8821 -0.0283 0.4324 18 6 5.0472 1.2013 0.0104 19 1 -0.3633 -0.0056 1.0277 20 1 -0.3633 -0.8872 -0.5187 21 1 -0.3633 0.8928 -0.5090 22 1 2.0167 2.1653 -0.0008 23 1 0.8820 -2.5902 -0.5244 24 1 2.5760 -3.1369 -0.5287 25 1 0.7175 -6.0128 0.8258 26 1 5.0644 -2.0281 0.6859 27 1 5.2509 -1.5206 -1.0190 28 1 6.0340 -0.0441 1.5117 29 1 6.8366 -0.0508 -0.0935 30 1 5.1639 2.0080 0.7340 31 1 5.3396 1.5375 -0.9844 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259766020.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:14 Heat of formation + Delta-G solvation = 17.725805 kcal Electronic energy + Delta-G solvation = -13169.924370 eV Core-core repulsion = 11029.740439 eV Total energy + Delta-G solvation = -2140.183931 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.46655 -36.91843 -35.22532 -32.40459 -31.89748 -29.90981 -26.81495 -26.67192 -24.45583 -21.86116 -20.55019 -19.33230 -18.57479 -17.26601 -16.78449 -15.98690 -14.97854 -14.73704 -14.27570 -14.10117 -13.99336 -13.65866 -13.58013 -13.27958 -13.10848 -12.74964 -12.64389 -12.38419 -12.32339 -12.22653 -11.73788 -11.57695 -11.40026 -10.66245 -9.18085 -8.56728 -8.15551 -6.37998 1.33950 1.35519 1.47405 1.54196 2.15985 2.24797 2.39095 3.05587 3.44770 3.82144 3.98580 4.22292 4.45644 4.48620 4.61781 4.68728 4.83375 4.88976 4.92812 4.97335 5.01180 5.11201 5.21261 5.23520 5.32434 5.56788 5.66768 5.79220 6.09523 6.42821 6.53174 6.71442 6.78590 7.30912 8.84828 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.033757 B = 0.010308 C = 0.008893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.264173 B = 2715.659457 C = 3147.936953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.202 4.202 3 C -0.202 4.202 4 C -0.031 4.031 5 N -0.478 5.478 6 C 0.044 3.956 7 C 0.094 3.906 8 C -0.523 4.523 9 H 0.045 0.955 10 C 0.007 3.993 11 N -0.928 5.928 12 Si 0.966 3.034 13 H -0.269 1.269 14 H -0.273 1.273 15 H -0.273 1.273 16 C 0.091 3.909 17 C -0.114 4.114 18 C -0.047 4.047 19 H 0.051 0.949 20 H 0.040 0.960 21 H 0.077 0.923 22 H 0.147 0.853 23 H 0.015 0.985 24 H -0.010 1.010 25 H 0.267 0.733 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.128 0.872 30 H 0.101 0.899 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.590 10.956 -0.484 13.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.208 4.208 3 C -0.226 4.226 4 C -0.142 4.142 5 N -0.156 5.156 6 C -0.066 4.066 7 C 0.056 3.944 8 C -0.561 4.561 9 H 0.063 0.937 10 C -0.191 4.191 11 N -0.568 5.568 12 Si 0.790 3.210 13 H -0.194 1.194 14 H -0.198 1.198 15 H -0.199 1.199 16 C -0.029 4.029 17 C -0.151 4.151 18 C -0.085 4.085 19 H 0.069 0.931 20 H 0.059 0.941 21 H 0.096 0.904 22 H 0.165 0.835 23 H 0.034 0.966 24 H 0.009 0.991 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.146 0.854 30 H 0.120 0.880 31 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.790 10.410 -0.533 13.635 hybrid contribution -0.541 -0.977 0.633 1.283 sum 8.249 9.434 0.099 12.532 Atomic orbital electron populations 1.19954 0.89775 1.01190 1.00837 1.19455 0.96136 0.91917 1.13261 1.20198 0.90354 0.98161 1.13920 1.22277 0.97405 0.84183 1.10365 1.45485 1.05039 1.08496 1.56549 1.20590 0.81632 0.96762 1.07639 1.17482 0.94614 0.85854 0.96409 1.21266 1.45546 0.97193 0.92100 0.93710 1.25904 0.94670 0.96691 1.01862 1.70082 1.46599 1.07258 1.32852 0.85384 0.78286 0.78180 0.79131 1.19380 1.19791 1.19857 1.22563 0.78330 0.99289 1.02697 1.22688 0.98457 0.90924 1.03058 1.20796 0.85525 0.98205 1.03945 0.93058 0.94074 0.90432 0.83503 0.96643 0.99148 0.92433 0.91453 0.89686 0.89844 0.85359 0.88024 0.88187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.43 10.16 71.24 0.72 -1.71 16 2 C -0.20 -9.12 6.13 -20.05 -0.12 -9.24 16 3 C -0.20 -7.77 10.81 22.17 0.24 -7.53 16 4 C -0.03 -1.10 7.44 41.41 0.31 -0.79 16 5 N -0.48 -20.09 3.58 -490.06 -1.75 -21.84 16 6 C 0.04 2.22 6.36 40.96 0.26 2.48 16 7 C 0.09 5.40 5.30 29.10 0.15 5.55 16 8 C -0.52 -31.36 9.09 25.60 0.23 -31.12 16 9 H 0.04 2.72 7.74 -2.91 -0.02 2.70 16 10 C 0.01 0.41 5.46 84.66 0.46 0.87 16 11 N -0.93 -56.85 13.29 21.45 0.28 -56.57 16 12 Si 0.97 45.42 29.54 68.60 2.03 47.45 16 13 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 14 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 15 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 16 C 0.09 2.95 7.77 86.69 0.67 3.63 16 17 C -0.11 -2.41 7.15 31.55 0.23 -2.18 16 18 C -0.05 -1.08 6.85 30.60 0.21 -0.87 16 19 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 20 H 0.04 1.76 7.13 -2.39 -0.02 1.75 16 21 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 22 H 0.15 4.69 8.06 -2.91 -0.02 4.67 16 23 H 0.02 0.94 7.12 -2.39 -0.02 0.92 16 24 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 25 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 26 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 28 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 29 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.10 1.91 8.14 -2.39 -0.02 1.90 16 31 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -71.47 261.87 5.02 -66.45 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: 1.10 Total: 5.42 kcal Atomic # 6 Polarization: -44.28 SS G_CDS: 3.37 Total: -40.91 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -1.47 Total: -78.41 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -71.47 5.02 -66.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259766020.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.172 kcal (2) G-P(sol) polarization free energy of solvation -71.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds