Wall clock time and date at job start Mon Mar 30 2020 02:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39907 * 126.51539 * 2 1 4 4 C 1.39943 * 126.32658 * 359.96138 * 3 2 1 5 5 H 1.07998 * 120.00179 * 18.99990 * 4 3 2 6 6 C 1.40069 * 119.99985 * 198.99635 * 4 3 2 7 7 N 1.30860 * 120.00219 * 168.15038 * 6 4 3 8 8 Si 1.86803 * 119.99785 * 348.14675 * 6 4 3 9 9 H 1.48497 * 109.46892 * 179.97438 * 8 6 4 10 10 H 1.48500 * 109.47257 * 300.00095 * 8 6 4 11 11 H 1.48497 * 109.46727 * 60.00305 * 8 6 4 12 12 N 1.38164 * 107.34352 * 180.22289 * 3 2 1 13 13 H 0.97000 * 125.74155 * 179.70777 * 12 3 2 14 14 C 1.35763 * 108.51340 * 359.56887 * 12 3 2 15 15 C 1.36533 * 108.93273 * 0.45921 * 14 12 3 16 16 C 1.50881 * 124.16486 * 179.63626 * 15 14 12 17 17 C 1.53360 * 108.37437 * 343.49466 * 16 15 14 18 18 C 1.53097 * 109.47384 * 49.98769 * 17 16 15 19 19 C 1.51054 * 127.28441 * 180.26188 * 14 12 3 20 20 H 1.09002 * 109.47482 * 90.01990 * 1 2 3 21 21 H 1.08999 * 109.47177 * 210.02802 * 1 2 3 22 22 H 1.09006 * 109.47261 * 330.02467 * 1 2 3 23 23 H 0.97002 * 119.99949 * 354.41316 * 7 6 4 24 24 H 1.09003 * 109.68408 * 103.21176 * 16 15 14 25 25 H 1.08998 * 109.68663 * 223.77314 * 16 15 14 26 26 H 1.08999 * 109.47102 * 169.98988 * 17 16 15 27 27 H 1.08998 * 109.46974 * 289.98757 * 17 16 15 28 28 H 1.09000 * 109.46019 * 49.44132 * 18 17 16 29 29 H 1.09000 * 109.45484 * 169.38815 * 18 17 16 30 30 H 1.09005 * 109.67627 * 43.78738 * 19 14 12 31 31 H 1.09000 * 109.71001 * 283.26293 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3395 1.1244 0.0000 4 6 1.9267 2.4616 -0.0008 5 1 0.9222 2.7168 0.3031 6 6 2.8162 3.4690 -0.3955 7 7 2.3750 4.6803 -0.6202 8 14 4.6324 3.0833 -0.6012 9 1 5.3543 4.3105 -1.0229 10 1 5.1855 2.6020 0.6902 11 1 4.8008 2.0306 -1.6349 12 7 3.6445 0.6707 -0.0051 13 1 4.4382 1.2283 -0.0103 14 6 3.6289 -0.6868 0.0015 15 6 2.3325 -1.1150 0.0004 16 6 1.9194 -2.5662 -0.0014 17 6 3.1294 -3.4127 -0.4154 18 6 4.3446 -3.0112 0.4248 19 6 4.8202 -1.6156 0.0047 20 1 -0.3634 -0.0004 -1.0277 21 1 -0.3633 -0.8897 0.5143 22 1 -0.3634 0.8902 0.5135 23 1 1.4227 4.8625 -0.5927 24 1 1.5929 -2.8562 0.9973 25 1 1.1065 -2.7156 -0.7119 26 1 2.9076 -4.4674 -0.2527 27 1 3.3459 -3.2454 -1.4704 28 1 4.0689 -2.9988 1.4793 29 1 5.1480 -3.7310 0.2683 30 1 5.5660 -1.2534 0.7125 31 1 5.2538 -1.6608 -0.9943 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259770126.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:38 Heat of formation + Delta-G solvation = -3.339216 kcal Electronic energy + Delta-G solvation = -13434.964455 eV Core-core repulsion = 11293.867076 eV Total energy + Delta-G solvation = -2141.097378 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.73343 -37.26130 -35.26717 -33.78177 -30.63723 -30.48183 -27.96402 -26.20622 -23.11688 -22.56773 -20.66298 -19.69001 -19.16536 -17.74667 -15.86898 -15.74676 -15.30469 -14.79611 -14.57729 -14.52077 -14.00223 -13.71861 -13.47751 -13.13262 -13.05449 -12.74498 -12.38936 -12.35676 -11.73934 -11.67054 -11.57101 -11.27857 -11.26533 -11.05195 -9.36864 -8.99613 -8.75917 -6.26355 1.03722 1.10959 1.37889 1.70365 2.03703 2.23599 2.70977 3.12548 4.07180 4.16018 4.17420 4.53818 4.63618 4.68329 4.80963 4.83344 4.89440 5.04064 5.06554 5.12646 5.16529 5.24627 5.33532 5.39559 5.49196 5.57572 5.60121 5.74857 6.02317 6.16300 6.58824 6.87425 6.98457 7.23202 8.04548 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.039390 B = 0.012798 C = 0.009903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.661007 B = 2187.309844 C = 2826.620513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 C -0.317 4.317 3 C 0.178 3.822 4 C -0.539 4.539 5 H 0.058 0.942 6 C -0.004 4.004 7 N -0.861 5.861 8 Si 1.079 2.921 9 H -0.261 1.261 10 H -0.252 1.252 11 H -0.259 1.259 12 N -0.596 5.596 13 H 0.385 0.615 14 C -0.091 4.091 15 C -0.139 4.139 16 C -0.042 4.042 17 C -0.110 4.110 18 C -0.102 4.102 19 C -0.038 4.038 20 H 0.036 0.964 21 H 0.060 0.940 22 H 0.026 0.974 23 H 0.275 0.725 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.086 0.914 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.446 -13.049 0.569 14.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.322 4.322 3 C 0.067 3.933 4 C -0.575 4.575 5 H 0.077 0.923 6 C -0.215 4.215 7 N -0.489 5.489 8 Si 0.901 3.099 9 H -0.186 1.186 10 H -0.179 1.179 11 H -0.185 1.185 12 N -0.207 5.207 13 H 0.229 0.771 14 C -0.198 4.198 15 C -0.146 4.146 16 C -0.079 4.079 17 C -0.148 4.148 18 C -0.140 4.140 19 C -0.076 4.076 20 H 0.055 0.945 21 H 0.079 0.921 22 H 0.045 0.955 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.105 0.895 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.110 0.890 30 H 0.084 0.916 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.982 -12.250 0.230 14.102 hybrid contribution -1.831 0.608 0.375 1.965 sum 5.152 -11.642 0.604 12.745 Atomic orbital electron populations 1.19601 0.91162 0.99531 0.99075 1.19592 0.94960 0.91869 1.25750 1.18248 0.82039 0.93743 0.99289 1.19600 1.01186 0.91078 1.45619 0.92341 1.28052 1.10284 0.92112 0.91044 1.70580 1.18236 1.21691 1.38348 0.83660 0.70327 0.77110 0.78763 1.18588 1.17913 1.18485 1.42810 1.06464 1.06865 1.64554 0.77059 1.20604 0.97153 0.82440 1.19562 1.19199 0.91537 0.94975 1.08858 1.20048 0.97964 0.89333 1.00591 1.21542 0.94263 0.99403 0.99553 1.21455 0.98338 0.94386 0.99815 1.20153 0.92570 0.93667 1.01220 0.94549 0.92104 0.95457 0.91429 0.91767 0.92121 0.89521 0.92617 0.92214 0.88959 0.91594 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.61 10.06 71.24 0.72 -0.90 16 2 C -0.32 -16.00 6.24 -19.34 -0.12 -16.12 16 3 C 0.18 9.77 6.42 38.96 0.25 10.02 16 4 C -0.54 -31.69 9.47 23.13 0.22 -31.47 16 5 H 0.06 3.65 7.52 -2.91 -0.02 3.63 16 6 C 0.00 -0.24 5.52 85.28 0.47 0.23 16 7 N -0.86 -49.78 13.66 21.86 0.30 -49.48 16 8 Si 1.08 47.57 24.94 68.60 1.71 49.28 16 9 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 10 H -0.25 -10.11 6.76 99.48 0.67 -9.44 16 11 H -0.26 -10.97 6.86 99.48 0.68 -10.29 16 12 N -0.60 -29.04 4.96 -174.33 -0.86 -29.91 16 13 H 0.39 17.39 3.08 -92.71 -0.29 17.11 16 14 C -0.09 -3.93 7.05 41.66 0.29 -3.64 16 15 C -0.14 -6.08 5.90 -20.09 -0.12 -6.20 16 16 C -0.04 -1.38 6.06 30.03 0.18 -1.19 16 17 C -0.11 -2.84 5.90 30.75 0.18 -2.66 16 18 C -0.10 -2.55 5.89 30.73 0.18 -2.37 16 19 C -0.04 -1.20 6.30 30.06 0.19 -1.01 16 20 H 0.04 1.54 8.14 -2.39 -0.02 1.53 16 21 H 0.06 2.32 8.08 -2.39 -0.02 2.30 16 22 H 0.03 1.24 7.53 -2.38 -0.02 1.23 16 23 H 0.28 15.89 8.73 -92.71 -0.81 15.08 16 24 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.06 1.49 8.11 -2.39 -0.02 1.47 16 28 H 0.06 1.54 8.11 -2.39 -0.02 1.52 16 29 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -64.69 247.24 4.32 -60.37 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.73 Total: 25.05 kcal Atomic # 6 Polarization: -57.75 SS G_CDS: 2.45 Total: -55.30 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -0.57 Total: -79.39 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 1.71 Total: 49.28 kcal Total: -64.69 4.32 -60.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259770126.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.028 kcal (2) G-P(sol) polarization free energy of solvation -64.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds