Wall clock time and date at job start Mon Mar 30 2020 02:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.39787 * 125.30052 * 2 1 4 4 C 1.30344 * 109.78746 * 179.97438 * 3 2 1 5 5 C 1.46002 * 107.50216 * 0.02562 * 4 3 2 6 6 C 1.40683 * 146.06091 * 180.02562 * 5 4 3 7 7 C 1.39179 * 107.28007 * 179.73664 * 6 5 4 8 8 C 1.39982 * 125.88786 * 180.24414 * 7 6 5 9 9 H 1.08002 * 120.00057 * 180.17881 * 8 7 6 10 10 C 1.40020 * 120.00055 * 0.17720 * 8 7 6 11 11 N 1.30892 * 119.99512 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00019 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47207 * 59.99896 * 12 10 8 14 14 H 1.48503 * 109.47090 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47288 * 299.99739 * 12 10 8 16 16 N 1.38475 * 108.23028 * 0.39412 * 7 6 5 17 17 C 1.46499 * 125.54290 * 179.84632 * 16 7 6 18 18 C 1.35866 * 125.30263 * 179.97438 * 2 1 3 19 19 H 1.09007 * 109.47120 * 270.02013 * 1 2 3 20 20 H 1.08994 * 109.47675 * 30.01989 * 1 2 3 21 21 H 1.09007 * 109.47393 * 150.02223 * 1 2 3 22 22 H 1.07999 * 126.25074 * 180.02562 * 4 3 2 23 23 H 1.07997 * 126.36397 * 359.97438 * 6 5 4 24 24 H 0.97003 * 119.99372 * 179.97438 * 11 10 8 25 25 H 1.09002 * 109.47391 * 269.69677 * 17 16 7 26 26 H 1.09001 * 109.46813 * 149.69734 * 17 16 7 27 27 H 1.09004 * 109.47041 * 29.69861 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2727 1.1408 0.0000 4 6 3.5287 0.7922 0.0005 5 6 3.5794 -0.6669 0.0003 6 6 4.4049 -1.8061 0.0009 7 6 3.5713 -2.9207 0.0060 8 6 3.9881 -4.2570 0.0130 9 1 3.2559 -5.0510 0.0137 10 6 5.3541 -4.5643 0.0192 11 7 6.2413 -3.6020 0.0179 12 14 5.9102 -6.3475 0.0293 13 1 5.3935 -7.0341 -1.1818 14 1 7.3942 -6.4032 0.0353 15 1 5.3852 -7.0230 1.2431 16 7 2.2586 -2.4799 -0.0005 17 6 1.0718 -3.3389 -0.0012 18 6 2.2501 -1.1088 0.0005 19 1 -0.3634 0.0004 1.0277 20 1 -0.3634 0.8897 -0.5141 21 1 -0.3634 -0.8902 -0.5135 22 1 4.3770 1.4606 0.0011 23 1 5.4848 -1.8143 0.0015 24 1 7.1877 -3.8149 0.0225 25 1 0.7780 -3.5517 -1.0291 26 1 0.2555 -2.8310 0.5123 27 1 1.2991 -4.2730 0.5126 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259789130.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:01 Heat of formation + Delta-G solvation = 101.422251 kcal Electronic energy + Delta-G solvation = -13002.603020 eV Core-core repulsion = 10762.508096 eV Total energy + Delta-G solvation = -2240.094924 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.10249 -38.85588 -35.35012 -34.11799 -31.94953 -30.13687 -27.71492 -26.80361 -25.65433 -22.24428 -20.90023 -20.39198 -18.49392 -17.60107 -16.94913 -16.55987 -15.72692 -15.08033 -14.89841 -14.30735 -13.98488 -13.88007 -13.51286 -13.16043 -12.95560 -12.87025 -12.23302 -12.18110 -12.01252 -11.89497 -11.20710 -11.08129 -10.16462 -8.87110 -8.33951 -8.24832 -6.06332 1.27214 1.37175 1.40475 1.48056 1.59668 1.90479 2.28200 2.68073 2.73086 3.50354 3.86992 4.10543 4.37575 4.39878 4.43497 4.49845 4.57340 4.68383 4.75331 5.25318 5.47313 5.62983 5.87749 6.03722 6.32778 6.45549 6.74900 6.94177 7.13244 7.24621 7.44344 8.55298 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.053995 B = 0.010211 C = 0.008642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.446740 B = 2741.392733 C = 3239.379923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.394 5.394 3 N -0.300 5.300 4 C 0.058 3.942 5 C -0.243 4.243 6 C -0.301 4.301 7 C 0.204 3.796 8 C -0.476 4.476 9 H 0.083 0.917 10 C 0.024 3.976 11 N -0.831 5.831 12 Si 1.000 3.000 13 H -0.261 1.261 14 H -0.273 1.273 15 H -0.260 1.260 16 N -0.481 5.481 17 C 0.085 3.915 18 C 0.149 3.851 19 H 0.071 0.929 20 H 0.097 0.903 21 H 0.084 0.916 22 H 0.205 0.795 23 H 0.142 0.858 24 H 0.281 0.719 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.420 -0.847 -0.005 7.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.191 5.191 3 N -0.119 5.119 4 C -0.133 4.133 5 C -0.257 4.257 6 C -0.327 4.327 7 C 0.100 3.900 8 C -0.511 4.511 9 H 0.101 0.899 10 C -0.189 4.189 11 N -0.459 5.459 12 Si 0.821 3.179 13 H -0.185 1.185 14 H -0.197 1.197 15 H -0.185 1.185 16 N -0.177 5.177 17 C -0.056 4.056 18 C -0.071 4.071 19 H 0.090 0.910 20 H 0.116 0.884 21 H 0.102 0.898 22 H 0.222 0.778 23 H 0.159 0.841 24 H 0.092 0.908 25 H 0.084 0.916 26 H 0.102 0.898 27 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.412 -0.037 -0.008 8.412 hybrid contribution 0.803 -1.195 0.007 1.440 sum -7.609 -1.232 -0.001 7.708 Atomic orbital electron populations 1.21883 0.73692 1.04600 1.03172 1.47229 1.05580 0.98655 1.67589 1.76468 1.02511 1.06467 1.26440 1.24598 0.94792 0.92518 1.01407 1.20524 0.93667 0.93768 1.17729 1.21099 0.98954 0.87937 1.24725 1.18227 0.78324 0.94475 0.98990 1.18753 0.93383 0.90109 1.48811 0.89933 1.26642 0.95662 1.04043 0.92562 1.69890 1.02955 1.35192 1.37884 0.84976 0.77485 0.75674 0.79753 1.18501 1.19722 1.18479 1.43548 1.06941 0.99921 1.67266 1.21898 0.85810 0.95282 1.02607 1.18264 0.92512 0.83347 1.13019 0.91045 0.88425 0.89777 0.77819 0.84093 0.90809 0.91623 0.89780 0.89786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.06 11.38 127.77 1.45 4.51 15 2 N -0.39 -16.59 4.01 -364.56 -1.46 -18.05 15 3 N -0.30 -13.04 12.42 -52.98 -0.66 -13.70 15 4 C 0.06 2.61 12.31 86.93 1.07 3.68 15 5 C -0.24 -13.04 7.17 -20.22 -0.15 -13.18 15 6 C -0.30 -17.67 9.81 23.09 0.23 -17.45 15 7 C 0.20 11.38 6.66 38.74 0.26 11.64 15 8 C -0.48 -25.36 8.96 23.12 0.21 -25.15 15 9 H 0.08 4.00 7.07 -2.91 -0.02 3.98 15 10 C 0.02 1.20 5.50 85.26 0.47 1.66 15 11 N -0.83 -44.91 10.20 21.85 0.22 -44.69 15 12 Si 1.00 38.21 29.56 68.60 2.03 40.24 15 13 H -0.26 -9.55 7.11 99.48 0.71 -8.84 15 14 H -0.27 -10.04 7.11 99.48 0.71 -9.33 15 15 H -0.26 -9.53 7.11 99.48 0.71 -8.82 15 16 N -0.48 -23.19 3.22 -534.50 -1.72 -24.91 15 17 C 0.09 2.97 10.82 127.77 1.38 4.36 15 18 C 0.15 7.29 8.22 132.86 1.09 8.38 15 19 H 0.07 1.79 8.14 -2.38 -0.02 1.77 15 20 H 0.10 2.37 8.14 -2.39 -0.02 2.35 15 21 H 0.08 2.09 7.64 -2.38 -0.02 2.07 15 22 H 0.21 7.48 8.06 -2.91 -0.02 7.46 15 23 H 0.14 8.70 5.62 -2.91 -0.02 8.68 15 24 H 0.28 13.81 8.30 -92.71 -0.77 13.04 15 25 H 0.07 2.07 8.14 -2.39 -0.02 2.05 15 26 H 0.08 2.39 7.66 -2.39 -0.02 2.38 15 27 H 0.08 2.82 7.27 -2.38 -0.02 2.81 15 Total: -1.00 -68.68 237.58 5.60 -63.08 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 1.18 Total: 19.58 kcal Atomic # 6 Polarization: -27.56 SS G_CDS: 6.01 Total: -21.54 kcal Atomic # 7 Polarization: -97.74 SS G_CDS: -3.62 Total: -101.35 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.24 kcal Total: -68.68 5.60 -63.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259789130.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.501 kcal (2) G-P(sol) polarization free energy of solvation -68.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds