Wall clock time and date at job start Mon Mar 30 2020 02:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.41029 * 126.27005 * 89.99864 * 10 9 7 12 12 C 1.34322 * 107.33720 * 179.97438 * 11 10 9 13 13 N 1.36830 * 108.37064 * 0.05642 * 12 11 10 14 14 C 1.34987 * 126.26460 * 269.68368 * 10 9 7 15 15 C 1.46748 * 124.23787 * 179.88225 * 13 12 11 16 16 C 1.53209 * 108.77898 * 342.65895 * 15 13 12 17 17 C 1.53128 * 109.61801 * 50.89998 * 16 15 13 18 18 C 1.50959 * 127.45309 * 180.10885 * 12 11 10 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 22 22 H 1.08005 * 126.33147 * 359.92899 * 11 10 9 23 23 H 1.07995 * 125.88770 * 0.02562 * 14 10 9 24 24 H 1.09003 * 109.58268 * 102.44670 * 15 13 12 25 25 H 1.08995 * 109.58666 * 222.86831 * 15 13 12 26 26 H 1.09000 * 109.44494 * 170.94006 * 16 15 13 27 27 H 1.08996 * 109.44802 * 290.84948 * 16 15 13 28 28 H 1.09000 * 109.51276 * 49.94854 * 17 16 15 29 29 H 1.08996 * 109.51713 * 170.05191 * 17 16 15 30 30 H 1.08996 * 109.72958 * 283.84640 * 18 12 11 31 31 H 1.09006 * 109.72608 * 44.51530 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.7723 -4.2838 1.1239 12 6 3.5975 -5.2480 0.6838 13 7 3.5896 -5.2311 -0.6843 14 6 2.7446 -4.2506 -1.1014 15 6 4.3744 -6.1419 -1.5258 16 6 5.4800 -6.7720 -0.6728 17 6 4.8730 -7.3557 0.6061 18 6 4.4125 -6.2089 1.5153 19 1 -0.4850 0.8401 -0.0004 20 1 0.6242 -2.5609 0.8844 21 1 0.6244 -2.5529 -0.8956 22 1 2.5632 -4.0423 2.1556 23 1 2.5256 -3.9979 -2.1283 24 1 3.7263 -6.9245 -1.9203 25 1 4.8210 -5.5848 -2.3494 26 1 5.9668 -7.5663 -1.2387 27 1 6.2149 -6.0108 -0.4111 28 1 4.0192 -7.9832 0.3504 29 1 5.6221 -7.9541 1.1246 30 1 5.2804 -5.6942 1.9274 31 1 3.8002 -6.6052 2.3254 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259816815.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:03 Heat of formation + Delta-G solvation = 28.564853 kcal Electronic energy + Delta-G solvation = -12912.420634 eV Core-core repulsion = 10772.706720 eV Total energy + Delta-G solvation = -2139.713914 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.77770 -35.88070 -33.03455 -32.16022 -30.11024 -26.91790 -26.64297 -23.84823 -22.38427 -21.26926 -18.65380 -17.87864 -16.26749 -16.04569 -15.18307 -14.40026 -14.06653 -13.71989 -13.40146 -12.98899 -12.71581 -12.18291 -11.74963 -11.51118 -11.16148 -11.03168 -10.98207 -10.81339 -10.75826 -10.49660 -10.02824 -9.46093 -9.20145 -8.24923 -7.54542 -6.98451 -5.85744 -3.87668 2.98587 3.38553 3.45355 3.50843 3.55285 4.02664 4.59941 4.62881 4.71813 4.82121 5.15741 5.34542 5.45774 5.47449 5.60001 5.69086 5.81643 5.88583 5.92583 6.10786 6.20905 6.47790 6.71716 7.14340 7.30278 7.74389 7.78360 8.02624 8.11799 8.21650 8.30352 8.61190 9.18823 9.74715 11.23618 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.057356 B = 0.007172 C = 0.007121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.064896 B = 3903.018702 C = 3930.993978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.053 3.947 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.499 4.499 8 H 0.055 0.945 9 C 0.079 3.921 10 C -0.111 4.111 11 C -0.188 4.188 12 C -0.007 4.007 13 N -0.457 5.457 14 C -0.039 4.039 15 C 0.110 3.890 16 C -0.132 4.132 17 C -0.122 4.122 18 C -0.045 4.045 19 H 0.258 0.742 20 H 0.023 0.977 21 H 0.020 0.980 22 H 0.126 0.874 23 H 0.151 0.849 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.638 -13.921 -0.814 16.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.538 4.538 8 H 0.073 0.927 9 C 0.041 3.959 10 C -0.117 4.117 11 C -0.214 4.214 12 C -0.117 4.117 13 N -0.137 5.137 14 C -0.165 4.165 15 C -0.012 4.012 16 C -0.169 4.169 17 C -0.159 4.159 18 C -0.083 4.083 19 H 0.068 0.932 20 H 0.041 0.959 21 H 0.038 0.962 22 H 0.144 0.856 23 H 0.169 0.831 24 H 0.088 0.912 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.687 -14.023 -1.072 17.078 hybrid contribution 0.433 1.068 -0.135 1.161 sum 10.120 -12.955 -1.207 16.484 Atomic orbital electron populations 1.69982 1.05959 1.26257 1.51773 1.25026 0.94833 0.99045 0.95798 0.86552 0.80155 0.83966 0.77442 1.19847 1.21155 1.21096 1.21241 0.93085 0.90328 1.49121 0.92700 1.17700 0.91965 0.88864 0.97352 1.20318 1.01589 0.98694 0.91076 1.20465 1.02903 0.99285 0.98739 1.20088 1.05692 1.03051 0.82869 1.43886 1.36240 1.28283 1.05256 1.21424 1.00487 0.95366 0.99270 1.21737 0.93098 0.92765 0.93559 1.21819 0.97561 1.00664 0.96899 1.21607 1.00654 0.97829 0.95855 1.20194 0.98256 0.93539 0.96346 0.93207 0.95857 0.96162 0.85614 0.83112 0.91217 0.90314 0.90421 0.91004 0.91690 0.91343 0.91031 0.90423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.85 13.29 55.43 0.74 -27.11 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 22.49 29.54 -169.99 -5.02 17.47 16 4 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.50 -14.92 9.09 -34.44 -0.31 -15.23 16 8 H 0.05 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.08 2.20 5.47 -29.03 -0.16 2.04 16 10 C -0.11 -2.66 5.33 -104.72 -0.56 -3.22 16 11 C -0.19 -4.08 10.75 -39.91 -0.43 -4.51 16 12 C -0.01 -0.13 6.55 -81.62 -0.53 -0.66 16 13 N -0.46 -8.14 3.15 -112.21 -0.35 -8.49 16 14 C -0.04 -0.82 11.42 -16.86 -0.19 -1.02 16 15 C 0.11 1.40 6.96 -3.80 -0.03 1.38 16 16 C -0.13 -1.37 5.92 -26.56 -0.16 -1.52 16 17 C -0.12 -1.29 5.96 -26.44 -0.16 -1.44 16 18 C -0.05 -0.61 6.28 -27.53 -0.17 -0.78 16 19 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 20 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.13 2.62 8.06 -52.48 -0.42 2.20 16 23 H 0.15 2.94 8.06 -52.49 -0.42 2.51 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 28 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 260.02 15.07 3.92 3.92 Total: -1.00 -32.98 260.02 -8.13 -41.10 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: -4.61 Total: -3.39 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: -2.80 Total: -23.49 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.38 Total: -35.61 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -32.98 -8.13 -41.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259816815.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.669 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds