Wall clock time and date at job start Mon Mar 30 2020 02:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.41029 * 126.27005 * 89.99864 * 10 9 7 12 12 C 1.34322 * 107.33720 * 179.97438 * 11 10 9 13 13 N 1.36830 * 108.37064 * 0.05642 * 12 11 10 14 14 C 1.34987 * 126.26460 * 269.68368 * 10 9 7 15 15 C 1.46748 * 124.23787 * 179.88225 * 13 12 11 16 16 C 1.53209 * 108.77898 * 342.65895 * 15 13 12 17 17 C 1.53128 * 109.61801 * 50.89998 * 16 15 13 18 18 C 1.50959 * 127.45309 * 180.10885 * 12 11 10 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 22 22 H 1.08005 * 126.33147 * 359.92899 * 11 10 9 23 23 H 1.07995 * 125.88770 * 0.02562 * 14 10 9 24 24 H 1.09003 * 109.58268 * 102.44670 * 15 13 12 25 25 H 1.08995 * 109.58666 * 222.86831 * 15 13 12 26 26 H 1.09000 * 109.44494 * 170.94006 * 16 15 13 27 27 H 1.08996 * 109.44802 * 290.84948 * 16 15 13 28 28 H 1.09000 * 109.51276 * 49.94854 * 17 16 15 29 29 H 1.08996 * 109.51713 * 170.05191 * 17 16 15 30 30 H 1.08996 * 109.72958 * 283.84640 * 18 12 11 31 31 H 1.09006 * 109.72608 * 44.51530 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.7723 -4.2838 1.1239 12 6 3.5975 -5.2480 0.6838 13 7 3.5896 -5.2311 -0.6843 14 6 2.7446 -4.2506 -1.1014 15 6 4.3744 -6.1419 -1.5258 16 6 5.4800 -6.7720 -0.6728 17 6 4.8730 -7.3557 0.6061 18 6 4.4125 -6.2089 1.5153 19 1 -0.4850 0.8401 -0.0004 20 1 0.6242 -2.5609 0.8844 21 1 0.6244 -2.5529 -0.8956 22 1 2.5632 -4.0423 2.1556 23 1 2.5256 -3.9979 -2.1283 24 1 3.7263 -6.9245 -1.9203 25 1 4.8210 -5.5848 -2.3494 26 1 5.9668 -7.5663 -1.2387 27 1 6.2149 -6.0108 -0.4111 28 1 4.0192 -7.9832 0.3504 29 1 5.6221 -7.9541 1.1246 30 1 5.2804 -5.6942 1.9274 31 1 3.8002 -6.6052 2.3254 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259816815.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:02 Heat of formation + Delta-G solvation = 9.150275 kcal Electronic energy + Delta-G solvation = -12913.262513 eV Core-core repulsion = 10772.706720 eV Total energy + Delta-G solvation = -2140.555793 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.24415 -37.06580 -35.15822 -33.48512 -31.92139 -28.54624 -28.12571 -25.45655 -24.12115 -22.36641 -20.26228 -19.23169 -18.44477 -17.58193 -16.49772 -16.28673 -15.02281 -14.81973 -14.66988 -14.41462 -14.27781 -14.11339 -13.65560 -13.29904 -12.88359 -12.53455 -12.38799 -12.26593 -11.89066 -11.71891 -11.62808 -11.44712 -11.43652 -10.56708 -9.14162 -8.66559 -8.12183 -6.28094 1.37663 1.39643 1.47188 1.53676 2.21270 2.24348 2.48361 3.13480 3.72293 3.86245 3.92231 4.06778 4.39891 4.44148 4.53140 4.66227 4.81918 4.91597 4.95320 4.99028 5.08057 5.11515 5.26707 5.35905 5.39419 5.52728 5.80693 5.93665 6.19978 6.37483 6.53724 6.76201 6.85578 7.39884 8.94372 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.057356 B = 0.007172 C = 0.007121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.064896 B = 3903.018702 C = 3930.993978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.048 0.952 9 C 0.090 3.910 10 C -0.156 4.156 11 C -0.233 4.233 12 C 0.017 3.983 13 N -0.449 5.449 14 C -0.041 4.041 15 C 0.096 3.904 16 C -0.127 4.127 17 C -0.118 4.118 18 C -0.049 4.049 19 H 0.264 0.736 20 H -0.010 1.010 21 H -0.005 1.005 22 H 0.118 0.882 23 H 0.161 0.839 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.115 0.885 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.296 -15.283 -1.249 19.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.066 0.934 9 C 0.052 3.948 10 C -0.163 4.163 11 C -0.258 4.258 12 C -0.095 4.095 13 N -0.127 5.127 14 C -0.170 4.170 15 C -0.023 4.023 16 C -0.165 4.165 17 C -0.155 4.155 18 C -0.086 4.086 19 H 0.073 0.927 20 H 0.008 0.992 21 H 0.013 0.987 22 H 0.136 0.864 23 H 0.178 0.822 24 H 0.108 0.892 25 H 0.110 0.890 26 H 0.133 0.867 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.119 0.881 30 H 0.102 0.898 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 12.361 -15.416 -1.522 19.819 hybrid contribution -0.404 1.408 -0.012 1.465 sum 11.957 -14.009 -1.534 18.481 Atomic orbital electron populations 1.70111 1.07722 1.27715 1.52037 1.25996 0.95829 1.03195 0.94826 0.85352 0.78727 0.78591 0.78075 1.19176 1.19849 1.20027 1.21488 0.92872 0.91679 1.49928 0.93363 1.17393 0.92230 0.90738 0.94414 1.20087 1.03125 0.99354 0.93708 1.20528 1.05607 1.01665 0.98023 1.20718 1.03552 1.01701 0.83524 1.44221 1.35109 1.27541 1.05799 1.21417 1.00777 0.95947 0.98838 1.22255 0.93791 0.92493 0.93793 1.21876 0.96370 1.01414 0.96827 1.21632 1.01608 0.96731 0.95532 1.20425 0.98025 0.93629 0.96547 0.92669 0.99178 0.98715 0.86356 0.82193 0.89247 0.89049 0.86657 0.91590 0.91597 0.88119 0.89835 0.89276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.72 13.29 21.45 0.28 -59.44 16 2 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 3 Si 0.97 46.82 29.54 68.60 2.03 48.85 16 4 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 5 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 7 C -0.52 -32.55 9.09 25.60 0.23 -32.32 16 8 H 0.05 3.00 7.74 -2.91 -0.02 2.97 16 9 C 0.09 5.39 5.47 29.10 0.16 5.55 16 10 C -0.16 -7.93 5.33 -19.93 -0.11 -8.04 16 11 C -0.23 -10.51 10.75 22.06 0.24 -10.27 16 12 C 0.02 0.62 6.55 40.97 0.27 0.89 16 13 N -0.45 -15.39 3.15 -508.93 -1.60 -16.99 16 14 C -0.04 -1.77 11.42 83.30 0.95 -0.82 16 15 C 0.10 2.12 6.96 86.40 0.60 2.72 16 16 C -0.13 -2.04 5.92 30.71 0.18 -1.85 16 17 C -0.12 -1.94 5.96 30.78 0.18 -1.75 16 18 C -0.05 -1.15 6.28 30.07 0.19 -0.96 16 19 H 0.26 15.66 8.31 -92.70 -0.77 14.89 16 20 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 21 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 22 H 0.12 5.27 8.06 -2.91 -0.02 5.25 16 23 H 0.16 6.36 8.06 -2.91 -0.02 6.33 16 24 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.18 8.11 -2.39 -0.02 1.16 16 28 H 0.07 1.11 8.12 -2.39 -0.02 1.09 16 29 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 Total: -1.00 -75.06 260.02 5.15 -69.91 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: 1.09 Total: 4.15 kcal Atomic # 6 Polarization: -49.84 SS G_CDS: 3.36 Total: -46.48 kcal Atomic # 7 Polarization: -75.11 SS G_CDS: -1.32 Total: -76.43 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -75.06 5.15 -69.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259816815.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.055 kcal (2) G-P(sol) polarization free energy of solvation -75.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds