Wall clock time and date at job start Mon Mar 30 2020 02:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34847 * 125.89074 * 2 1 4 4 C 1.40897 * 107.41783 * 179.97438 * 3 2 1 5 5 C 1.50701 * 126.29199 * 179.97438 * 4 3 2 6 6 C 1.34856 * 107.41422 * 359.97438 * 4 3 2 7 7 C 1.50697 * 125.88744 * 179.97438 * 6 4 3 8 8 C 1.50701 * 115.55397 * 293.72323 * 7 6 4 9 9 H 1.08001 * 119.99968 * 144.51978 * 8 7 6 10 10 C 1.37881 * 119.99782 * 324.52688 * 8 7 6 11 11 N 1.31509 * 119.99954 * 350.87622 * 10 8 7 12 12 Si 1.86805 * 119.99779 * 170.87527 * 10 8 7 13 13 H 1.48501 * 109.47190 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.46764 * 120.00001 * 12 10 8 15 15 H 1.48501 * 109.46821 * 239.99742 * 12 10 8 16 16 C 1.52998 * 117.49852 * 148.05241 * 7 6 4 17 17 C 1.53003 * 117.49852 * 79.39298 * 7 6 4 18 18 N 1.36336 * 108.21890 * 0.02562 * 6 4 3 19 19 H 0.96998 * 125.63560 * 179.97438 * 18 6 4 20 20 H 1.09004 * 109.46834 * 90.02405 * 1 2 3 21 21 H 1.09001 * 109.47297 * 210.02479 * 1 2 3 22 22 H 1.09003 * 109.47166 * 330.02714 * 1 2 3 23 23 H 1.07996 * 126.29139 * 359.71793 * 3 2 1 24 24 H 1.08996 * 109.46966 * 95.33007 * 5 4 3 25 25 H 1.09001 * 109.46546 * 215.32754 * 5 4 3 26 26 H 1.08993 * 109.46913 * 335.32444 * 5 4 3 27 27 H 0.96999 * 120.00310 * 175.04189 * 11 10 8 28 28 H 1.09003 * 117.50096 * 0.02562 * 16 7 6 29 29 H 1.09005 * 117.50247 * 145.01782 * 16 7 6 30 30 H 1.08998 * 117.50164 * 214.97504 * 17 7 6 31 31 H 1.08999 * 117.49590 * 359.97438 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2975 1.0924 0.0000 4 6 3.6339 0.6460 0.0006 5 6 4.8648 1.5154 0.0003 6 6 3.6090 -0.7023 0.0015 7 6 4.8133 -1.6081 0.0019 8 6 5.6614 -1.5625 -1.2431 9 1 6.7338 -1.6673 -1.1701 10 6 5.0681 -1.3869 -2.4753 11 7 3.7589 -1.4388 -2.5881 12 14 6.1240 -1.0754 -3.9844 13 1 7.5564 -1.0645 -3.5927 14 1 5.8922 -2.1513 -4.9814 15 1 5.7629 0.2367 -4.5789 16 6 4.6859 -2.9526 0.7209 17 6 5.5284 -1.8322 1.3358 18 7 2.3063 -1.1046 0.0009 19 1 1.9989 -2.0246 0.0010 20 1 -0.3633 -0.0004 -1.0277 21 1 -0.3634 -0.8898 0.5142 22 1 -0.3634 0.8902 0.5134 23 1 1.9671 2.1206 -0.0043 24 1 5.2164 1.6478 1.0234 25 1 5.6453 1.0397 -0.5935 26 1 4.6229 2.4874 -0.4294 27 1 3.3373 -1.2443 -3.4397 28 1 3.7308 -3.1821 1.1934 29 1 5.2157 -3.8041 0.2937 30 1 6.6121 -1.9470 1.3130 31 1 5.1279 -1.3241 2.2130 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259868109.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:56 Heat of formation + Delta-G solvation = 39.595017 kcal Electronic energy + Delta-G solvation = -13579.675633 eV Core-core repulsion = 11440.440023 eV Total energy + Delta-G solvation = -2139.235610 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.72655 -37.77335 -34.13463 -33.15909 -31.71948 -28.23548 -27.65640 -25.98646 -23.01830 -21.78917 -20.67902 -19.67029 -18.46238 -16.86655 -16.58780 -15.57923 -15.13564 -14.63684 -13.99974 -13.96937 -13.70059 -13.39486 -13.24466 -12.95496 -12.87039 -12.72350 -12.53727 -12.30611 -12.12176 -11.95598 -11.30070 -11.16089 -10.69668 -10.15334 -9.08079 -8.36531 -7.81720 -6.12587 1.39044 1.44297 1.52876 1.88445 2.41666 2.50964 2.83155 3.14647 3.69877 4.26535 4.38889 4.55729 4.60140 4.73789 4.79254 4.90403 4.91185 4.96947 5.05882 5.12100 5.15341 5.21737 5.34263 5.50672 5.53180 5.73835 5.75758 6.06388 6.35883 6.68956 6.80559 6.88568 7.28903 7.47128 8.95478 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.027827 B = 0.014404 C = 0.012580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.958447 B = 1943.465746 C = 2225.277244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.019 4.019 3 C -0.222 4.222 4 C -0.217 4.217 5 C -0.059 4.059 6 C 0.136 3.864 7 C 0.079 3.921 8 C -0.501 4.501 9 H 0.055 0.945 10 C 0.038 3.962 11 N -0.877 5.877 12 Si 0.939 3.061 13 H -0.267 1.267 14 H -0.285 1.285 15 H -0.285 1.285 16 C -0.205 4.205 17 C -0.178 4.178 18 N -0.538 5.538 19 H 0.403 0.597 20 H 0.063 0.937 21 H 0.068 0.932 22 H 0.088 0.912 23 H 0.130 0.870 24 H 0.052 0.948 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.255 0.745 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.894 1.900 4.588 6.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.131 4.131 3 C -0.248 4.248 4 C -0.223 4.223 5 C -0.117 4.117 6 C 0.022 3.978 7 C 0.077 3.923 8 C -0.538 4.538 9 H 0.073 0.927 10 C -0.164 4.164 11 N -0.513 5.513 12 Si 0.766 3.234 13 H -0.191 1.191 14 H -0.211 1.211 15 H -0.211 1.211 16 C -0.243 4.243 17 C -0.216 4.216 18 N -0.130 5.130 19 H 0.239 0.761 20 H 0.082 0.918 21 H 0.087 0.913 22 H 0.107 0.893 23 H 0.148 0.852 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.114 1.720 4.432 6.287 hybrid contribution 0.419 -0.345 -1.099 1.225 sum -3.696 1.375 3.333 5.163 Atomic orbital electron populations 1.20200 0.86490 1.03468 1.02211 1.20556 0.94284 0.86200 1.12047 1.20542 0.92515 0.97398 1.14310 1.19216 0.95055 0.92980 1.15022 1.19889 0.94738 0.96904 1.00141 1.19206 0.83433 0.93018 1.02181 1.17326 0.91976 0.91927 0.91036 1.20630 0.92282 1.50973 0.89954 0.92676 1.25473 0.95823 0.94450 1.00701 1.70043 1.09543 1.46429 1.25276 0.85798 0.79876 0.77411 0.80343 1.19089 1.21092 1.21107 1.23013 1.00264 0.94217 1.06846 1.22874 0.98012 1.03498 0.97213 1.41629 1.05686 1.07561 1.58159 0.76130 0.91837 0.91270 0.89322 0.85237 0.92912 0.93557 0.93100 0.93591 0.90801 0.90518 0.89528 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.88 10.42 71.24 0.74 -1.14 16 2 C -0.02 -0.75 7.16 41.08 0.29 -0.46 16 3 C -0.22 -9.46 10.71 22.14 0.24 -9.23 16 4 C -0.22 -10.22 6.14 -19.99 -0.12 -10.34 16 5 C -0.06 -2.55 10.11 71.24 0.72 -1.82 16 6 C 0.14 6.55 4.14 41.08 0.17 6.72 16 7 C 0.08 3.84 1.90 -53.67 -0.10 3.74 16 8 C -0.50 -26.87 8.12 25.60 0.21 -26.66 16 9 H 0.06 2.96 7.83 -2.91 -0.02 2.93 16 10 C 0.04 2.07 5.27 84.66 0.45 2.51 16 11 N -0.88 -48.69 11.61 21.45 0.25 -48.44 16 12 Si 0.94 43.33 29.55 68.60 2.03 45.35 16 13 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 14 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 15 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 16 C -0.21 -8.93 9.91 30.62 0.30 -8.62 16 17 C -0.18 -7.53 9.94 30.62 0.30 -7.22 16 18 N -0.54 -23.28 5.90 -171.12 -1.01 -24.29 16 19 H 0.40 16.34 8.96 -92.71 -0.83 15.51 16 20 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 21 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 22 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 23 H 0.13 4.88 8.06 -2.91 -0.02 4.85 16 24 H 0.05 2.03 8.14 -2.39 -0.02 2.02 16 25 H 0.05 2.16 7.11 -2.39 -0.02 2.15 16 26 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.25 13.88 8.32 -92.71 -0.77 13.11 16 28 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 29 H 0.08 3.35 8.14 -2.38 -0.02 3.33 16 30 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 31 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -59.62 265.77 4.75 -54.87 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.28 Total: 25.03 kcal Atomic # 6 Polarization: -55.72 SS G_CDS: 3.20 Total: -52.52 kcal Atomic # 7 Polarization: -71.97 SS G_CDS: -0.76 Total: -72.73 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -59.62 4.75 -54.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259868109.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.466 kcal (2) G-P(sol) polarization free energy of solvation -59.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds