Wall clock time and date at job start Mon Mar 30 2020 02:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35084 * 126.36581 * 2 1 4 4 N 1.36547 * 108.27906 * 179.75938 * 3 2 1 5 5 H 0.97001 * 125.67493 * 180.02562 * 4 3 2 6 6 C 1.35825 * 108.65208 * 0.04233 * 4 3 2 7 7 C 1.35259 * 108.19064 * 359.90683 * 6 4 3 8 8 C 1.50748 * 124.34698 * 180.18435 * 7 6 4 9 9 C 1.53379 * 108.38552 * 16.40842 * 8 7 6 10 10 C 1.53122 * 109.45136 * 310.25297 * 9 8 7 11 11 H 1.08999 * 109.45603 * 310.13002 * 10 9 8 12 12 C 1.50697 * 109.46327 * 190.14879 * 10 9 8 13 13 H 1.08007 * 120.00289 * 359.95893 * 12 10 9 14 14 C 1.37879 * 120.00097 * 179.97438 * 12 10 9 15 15 N 1.31516 * 119.99698 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 120.00073 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47325 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47016 * 120.00349 * 16 14 12 19 19 H 1.48496 * 109.47348 * 240.00405 * 16 14 12 20 20 C 1.50896 * 127.80481 * 179.83727 * 6 4 3 21 21 H 1.09007 * 109.47198 * 90.02057 * 1 2 3 22 22 H 1.08999 * 109.47233 * 210.02262 * 1 2 3 23 23 H 1.09003 * 109.47228 * 330.02457 * 1 2 3 24 24 H 1.08000 * 125.85992 * 359.77699 * 3 2 1 25 25 H 1.09007 * 109.68072 * 256.68349 * 8 7 6 26 26 H 1.08995 * 109.71191 * 136.15356 * 8 7 6 27 27 H 1.08997 * 109.47637 * 190.25860 * 9 8 7 28 28 H 1.08997 * 109.47174 * 70.24815 * 9 8 7 29 29 H 0.97005 * 119.99829 * 180.02562 * 15 14 12 30 30 H 1.09005 * 109.67869 * 316.39313 * 20 6 4 31 31 H 1.08998 * 109.68074 * 76.89715 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3080 1.0878 0.0000 4 7 3.6060 0.6639 0.0054 5 1 4.3884 1.2373 0.0070 6 6 3.6194 -0.6943 0.0079 7 6 2.3386 -1.1292 0.0062 8 6 1.9334 -2.5812 0.0120 9 6 3.1470 -3.4205 0.4309 10 6 4.3631 -3.0110 -0.4047 11 1 4.0934 -3.0075 -1.4608 12 6 5.4833 -3.9926 -0.1756 13 1 5.3428 -4.8246 0.4986 14 6 6.6877 -3.8284 -0.8264 15 7 6.8589 -2.8148 -1.6468 16 14 8.0760 -5.0456 -0.5430 17 1 7.6323 -6.0878 0.4174 18 1 8.4443 -5.6852 -1.8317 19 1 9.2549 -4.3319 0.0101 20 6 4.8207 -1.6075 0.0105 21 1 -0.3634 -0.0004 -1.0277 22 1 -0.3634 -0.8898 0.5142 23 1 -0.3634 0.8902 0.5135 24 1 1.9783 2.1162 -0.0034 25 1 1.6101 -2.8761 -0.9864 26 1 1.1197 -2.7330 0.7211 27 1 2.9325 -4.4765 0.2671 28 1 3.3582 -3.2520 1.4868 29 1 7.7061 -2.6995 -2.1049 30 1 5.5632 -1.2392 -0.6975 31 1 5.2529 -1.6426 1.0105 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259887090.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:25 Heat of formation + Delta-G solvation = 17.138061 kcal Electronic energy + Delta-G solvation = -13261.820820 eV Core-core repulsion = 11121.611403 eV Total energy + Delta-G solvation = -2140.209417 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.68711 -35.73426 -32.81014 -31.95039 -28.74908 -28.24829 -26.08901 -24.37476 -22.17989 -20.19962 -18.69453 -17.51787 -16.55027 -16.14853 -14.52239 -14.17830 -13.26900 -13.15930 -12.80808 -12.67425 -12.26708 -12.04000 -11.95819 -11.54282 -11.36148 -10.95526 -10.73606 -10.58082 -10.22360 -10.13059 -9.49628 -8.99747 -8.80536 -8.38164 -7.77696 -7.01517 -5.99797 -4.05259 2.97055 3.29358 3.37758 3.42117 3.62831 4.01250 4.44015 5.31290 5.58054 5.73891 5.86606 5.91708 6.06071 6.12821 6.22386 6.28944 6.45133 6.62717 6.78964 6.83669 6.90047 6.98883 7.11039 7.23050 7.36907 7.67701 7.82125 7.95998 8.01748 8.08853 8.33918 8.46548 8.99924 9.59770 11.06606 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.058994 B = 0.008920 C = 0.008034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.509022 B = 3138.223954 C = 3484.434979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.165 4.165 3 C -0.050 4.050 4 N -0.558 5.558 5 H 0.407 0.593 6 C 0.047 3.953 7 C -0.179 4.179 8 C -0.042 4.042 9 C -0.109 4.109 10 C 0.057 3.943 11 H 0.029 0.971 12 C -0.511 4.511 13 H 0.058 0.942 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.890 3.110 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.285 1.285 20 C -0.043 4.043 21 H 0.053 0.947 22 H 0.056 0.944 23 H 0.050 0.950 24 H 0.151 0.849 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.259 0.741 30 H 0.093 0.907 31 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.241 5.748 2.864 9.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.173 4.173 3 C -0.179 4.179 4 N -0.152 5.152 5 H 0.243 0.757 6 C -0.066 4.066 7 C -0.185 4.185 8 C -0.079 4.079 9 C -0.146 4.146 10 C 0.038 3.962 11 H 0.047 0.953 12 C -0.549 4.549 13 H 0.076 0.924 14 C -0.141 4.141 15 N -0.532 5.532 16 Si 0.718 3.282 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.082 4.082 21 H 0.072 0.928 22 H 0.075 0.925 23 H 0.069 0.931 24 H 0.168 0.832 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.993 5.920 2.751 9.567 hybrid contribution 1.223 -0.099 0.060 1.229 sum -5.770 5.821 2.811 8.665 Atomic orbital electron populations 1.20019 0.91233 1.00997 1.00665 1.19186 0.94778 0.92638 1.10662 1.21401 0.83113 0.98143 1.15283 1.41764 1.07246 1.06972 1.59188 0.75731 1.21347 0.98339 0.82188 1.04773 1.19174 0.91806 0.94735 1.12757 1.19995 0.97645 0.90564 0.99731 1.21687 0.95409 0.97786 0.99740 1.18620 0.91579 0.90721 0.95243 0.95251 1.21303 0.97423 1.10319 1.25899 0.92387 1.25005 0.98598 0.95497 0.94991 1.69910 1.24860 1.29514 1.28901 0.86560 0.82184 0.81419 0.77995 1.19738 1.21064 1.21137 1.20544 0.91971 0.94554 1.01091 0.92812 0.92469 0.93140 0.83192 0.92608 0.93207 0.93124 0.93531 0.93131 0.88891 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.02 10.28 36.01 0.37 -0.65 16 2 C -0.17 -2.97 6.13 -104.99 -0.64 -3.62 16 3 C -0.05 -0.83 11.86 -16.57 -0.20 -1.03 16 4 N -0.56 -9.94 6.07 -8.98 -0.05 -9.99 16 5 H 0.41 6.06 8.96 -40.82 -0.37 5.69 16 6 C 0.05 1.01 7.05 -81.79 -0.58 0.43 16 7 C -0.18 -3.70 5.93 -104.91 -0.62 -4.32 16 8 C -0.04 -0.82 6.15 -27.66 -0.17 -0.99 16 9 C -0.11 -2.37 5.15 -26.47 -0.14 -2.51 16 10 C 0.06 1.45 2.07 -91.53 -0.19 1.26 16 11 H 0.03 0.82 8.11 -51.93 -0.42 0.40 16 12 C -0.51 -13.99 8.53 -34.44 -0.29 -14.28 16 13 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 14 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 15 N -0.89 -25.26 11.46 55.43 0.64 -24.63 16 16 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 20 C -0.04 -1.03 5.19 -27.61 -0.14 -1.18 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.06 0.79 8.03 -51.93 -0.42 0.37 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.15 1.95 8.06 -52.49 -0.42 1.52 16 25 H 0.06 1.09 8.14 -51.92 -0.42 0.66 16 26 H 0.05 0.88 8.05 -51.93 -0.42 0.46 16 27 H 0.05 1.06 8.11 -51.93 -0.42 0.64 16 28 H 0.05 1.01 8.11 -51.93 -0.42 0.59 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.09 2.41 6.44 -51.93 -0.33 2.08 16 31 H 0.05 1.27 8.12 -51.93 -0.42 0.85 16 LS Contribution 254.50 15.07 3.84 3.84 Total: -1.00 -29.34 254.50 -7.75 -37.09 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -4.45 Total: 2.91 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: -2.70 Total: -25.33 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: 0.58 Total: -34.62 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.34 -7.75 -37.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259887090.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.232 kcal (2) G-P(sol) polarization free energy of solvation -29.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds