Wall clock time and date at job start Mon Mar 30 2020 02:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35084 * 126.36581 * 2 1 4 4 N 1.36547 * 108.27906 * 179.75938 * 3 2 1 5 5 H 0.97001 * 125.67493 * 180.02562 * 4 3 2 6 6 C 1.35825 * 108.65208 * 0.04233 * 4 3 2 7 7 C 1.35259 * 108.19064 * 359.90683 * 6 4 3 8 8 C 1.50748 * 124.34698 * 180.18435 * 7 6 4 9 9 C 1.53379 * 108.38552 * 16.40842 * 8 7 6 10 10 C 1.53122 * 109.45136 * 310.25297 * 9 8 7 11 11 H 1.08999 * 109.45603 * 310.13002 * 10 9 8 12 12 C 1.50697 * 109.46327 * 190.14879 * 10 9 8 13 13 H 1.08007 * 120.00289 * 359.95893 * 12 10 9 14 14 C 1.37879 * 120.00097 * 179.97438 * 12 10 9 15 15 N 1.31516 * 119.99698 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 120.00073 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47325 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47016 * 120.00349 * 16 14 12 19 19 H 1.48496 * 109.47348 * 240.00405 * 16 14 12 20 20 C 1.50896 * 127.80481 * 179.83727 * 6 4 3 21 21 H 1.09007 * 109.47198 * 90.02057 * 1 2 3 22 22 H 1.08999 * 109.47233 * 210.02262 * 1 2 3 23 23 H 1.09003 * 109.47228 * 330.02457 * 1 2 3 24 24 H 1.08000 * 125.85992 * 359.77699 * 3 2 1 25 25 H 1.09007 * 109.68072 * 256.68349 * 8 7 6 26 26 H 1.08995 * 109.71191 * 136.15356 * 8 7 6 27 27 H 1.08997 * 109.47637 * 190.25860 * 9 8 7 28 28 H 1.08997 * 109.47174 * 70.24815 * 9 8 7 29 29 H 0.97005 * 119.99829 * 180.02562 * 15 14 12 30 30 H 1.09005 * 109.67869 * 316.39313 * 20 6 4 31 31 H 1.08998 * 109.68074 * 76.89715 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3080 1.0878 0.0000 4 7 3.6060 0.6639 0.0054 5 1 4.3884 1.2373 0.0070 6 6 3.6194 -0.6943 0.0079 7 6 2.3386 -1.1292 0.0062 8 6 1.9334 -2.5812 0.0120 9 6 3.1470 -3.4205 0.4309 10 6 4.3631 -3.0110 -0.4047 11 1 4.0934 -3.0075 -1.4608 12 6 5.4833 -3.9926 -0.1756 13 1 5.3428 -4.8246 0.4986 14 6 6.6877 -3.8284 -0.8264 15 7 6.8589 -2.8148 -1.6468 16 14 8.0760 -5.0456 -0.5430 17 1 7.6323 -6.0878 0.4174 18 1 8.4443 -5.6852 -1.8317 19 1 9.2549 -4.3319 0.0101 20 6 4.8207 -1.6075 0.0105 21 1 -0.3634 -0.0004 -1.0277 22 1 -0.3634 -0.8898 0.5142 23 1 -0.3634 0.8902 0.5135 24 1 1.9783 2.1162 -0.0034 25 1 1.6101 -2.8761 -0.9864 26 1 1.1197 -2.7330 0.7211 27 1 2.9325 -4.4765 0.2671 28 1 3.3582 -3.2520 1.4868 29 1 7.7061 -2.6995 -2.1049 30 1 5.5632 -1.2392 -0.6975 31 1 5.2529 -1.6426 1.0105 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259887090.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:25 Heat of formation + Delta-G solvation = 0.719117 kcal Electronic energy + Delta-G solvation = -13262.532799 eV Core-core repulsion = 11121.611403 eV Total energy + Delta-G solvation = -2140.921396 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.15292 -37.54675 -34.56199 -33.57900 -30.45423 -29.92638 -27.53456 -26.19018 -23.87073 -22.01756 -20.11043 -19.12949 -18.33292 -17.94797 -16.49367 -15.74825 -14.83372 -14.75499 -14.51261 -14.26099 -13.67741 -13.61534 -13.42959 -13.14370 -12.86737 -12.80184 -12.46670 -12.34559 -12.17391 -11.74336 -11.37507 -10.90975 -10.76979 -10.49017 -9.17695 -8.54048 -8.09185 -6.23875 1.40434 1.42539 1.53071 1.54339 2.14675 2.43399 2.64035 3.18652 4.27257 4.35450 4.41576 4.46619 4.51904 4.76478 4.81865 4.97450 5.02011 5.05409 5.09910 5.22407 5.24838 5.30057 5.38068 5.58946 5.65741 5.75295 5.97015 6.01617 6.33550 6.39310 6.50539 6.88095 6.97329 7.44737 8.95307 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.058994 B = 0.008920 C = 0.008034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.509022 B = 3138.223954 C = 3484.434979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.186 4.186 3 C -0.029 4.029 4 N -0.553 5.553 5 H 0.419 0.581 6 C 0.005 3.995 7 C -0.192 4.192 8 C -0.037 4.037 9 C -0.101 4.101 10 C 0.055 3.945 11 H -0.008 1.008 12 C -0.534 4.534 13 H 0.056 0.944 14 C 0.012 3.988 15 N -0.919 5.919 16 Si 0.956 3.044 17 H -0.266 1.266 18 H -0.281 1.281 19 H -0.280 1.280 20 C -0.027 4.027 21 H 0.061 0.939 22 H 0.058 0.942 23 H 0.075 0.925 24 H 0.195 0.805 25 H 0.054 0.946 26 H 0.076 0.924 27 H 0.053 0.947 28 H 0.045 0.955 29 H 0.260 0.740 30 H 0.064 0.936 31 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.400 6.607 3.501 11.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.193 4.193 3 C -0.158 4.158 4 N -0.148 5.148 5 H 0.256 0.744 6 C -0.108 4.108 7 C -0.198 4.198 8 C -0.075 4.075 9 C -0.139 4.139 10 C 0.036 3.964 11 H 0.010 0.990 12 C -0.572 4.572 13 H 0.074 0.926 14 C -0.186 4.186 15 N -0.559 5.559 16 Si 0.781 3.219 17 H -0.191 1.191 18 H -0.207 1.207 19 H -0.205 1.205 20 C -0.066 4.066 21 H 0.079 0.921 22 H 0.077 0.923 23 H 0.094 0.906 24 H 0.212 0.788 25 H 0.073 0.927 26 H 0.094 0.906 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.151 6.783 3.394 11.134 hybrid contribution 1.549 -0.311 -0.158 1.588 sum -6.602 6.472 3.236 9.796 Atomic orbital electron populations 1.20065 0.88524 1.02383 1.01571 1.19646 0.96808 0.91787 1.11066 1.22154 0.81950 0.99929 1.11807 1.41762 1.08605 1.05833 1.58578 0.74386 1.20919 0.97533 0.83703 1.08679 1.19508 0.92209 0.95807 1.12306 1.19963 0.97167 0.90088 1.00282 1.21569 0.95062 0.98382 0.98895 1.18557 0.92663 0.91537 0.93620 0.98976 1.21642 0.98542 1.10885 1.26132 0.92607 1.25783 1.00952 0.97190 0.94693 1.70049 1.25444 1.30873 1.29491 0.85537 0.79077 0.79257 0.77983 1.19052 1.20686 1.20547 1.20085 0.92601 0.94676 0.99211 0.92067 0.92312 0.90611 0.78800 0.92734 0.90582 0.92856 0.93632 0.93045 0.91771 0.94314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.69 10.28 71.24 0.73 -0.96 16 2 C -0.19 -6.18 6.13 -20.10 -0.12 -6.31 16 3 C -0.03 -0.85 11.86 83.23 0.99 0.14 16 4 N -0.55 -18.96 6.07 -182.32 -1.11 -20.06 16 5 H 0.42 12.00 8.96 -92.71 -0.83 11.17 16 6 C 0.01 0.23 7.05 41.32 0.29 0.52 16 7 C -0.19 -7.74 5.93 -20.05 -0.12 -7.86 16 8 C -0.04 -1.45 6.15 29.99 0.18 -1.27 16 9 C -0.10 -4.49 5.15 30.76 0.16 -4.33 16 10 C 0.06 2.90 2.07 -11.38 -0.02 2.88 16 11 H -0.01 -0.47 8.11 -2.39 -0.02 -0.49 16 12 C -0.53 -30.05 8.53 25.60 0.22 -29.83 16 13 H 0.06 3.08 7.74 -2.91 -0.02 3.05 16 14 C 0.01 0.69 5.30 84.65 0.45 1.14 16 15 N -0.92 -53.53 11.46 21.45 0.25 -53.29 16 16 Si 0.96 43.86 29.54 68.60 2.03 45.88 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 C -0.03 -1.35 5.19 30.03 0.16 -1.19 16 21 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 22 H 0.06 1.43 8.03 -2.39 -0.02 1.41 16 23 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.20 3.99 8.06 -2.91 -0.02 3.97 16 25 H 0.05 2.10 8.14 -2.38 -0.02 2.09 16 26 H 0.08 2.53 8.05 -2.39 -0.02 2.51 16 27 H 0.05 2.27 8.11 -2.39 -0.02 2.25 16 28 H 0.04 1.99 8.11 -2.39 -0.02 1.97 16 29 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 30 H 0.06 3.50 6.44 -2.38 -0.02 3.49 16 31 H 0.04 1.95 8.12 -2.39 -0.02 1.93 16 Total: -1.00 -64.00 254.50 4.36 -59.64 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.28 Total: 14.90 kcal Atomic # 6 Polarization: -49.99 SS G_CDS: 2.91 Total: -47.08 kcal Atomic # 7 Polarization: -72.49 SS G_CDS: -0.86 Total: -73.35 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -64.00 4.36 -59.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259887090.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.359 kcal (2) G-P(sol) polarization free energy of solvation -64.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds