Wall clock time and date at job start Mon Mar 30 2020 02:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38675 * 120.41772 * 2 1 4 4 C 1.38630 * 118.41860 * 179.74920 * 3 2 1 5 5 C 1.38224 * 119.16347 * 0.25530 * 4 3 2 6 6 C 1.50700 * 119.62022 * 179.97438 * 5 4 3 7 7 H 1.09006 * 109.47131 * 154.99527 * 6 5 4 8 8 C 1.53007 * 109.46787 * 35.00178 * 6 5 4 9 9 C 1.50697 * 109.47381 * 275.00093 * 6 5 4 10 10 H 1.08003 * 119.99240 * 359.97438 * 9 6 5 11 11 C 1.37878 * 120.00423 * 180.02562 * 9 6 5 12 12 N 1.31514 * 119.99382 * 359.97438 * 11 9 6 13 13 Si 1.86790 * 120.00049 * 179.97438 * 11 9 6 14 14 H 1.48498 * 109.47399 * 59.99835 * 13 11 9 15 15 H 1.48503 * 109.46969 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47207 * 299.99725 * 13 11 9 17 17 N 1.31857 * 120.76155 * 0.02562 * 5 4 3 18 18 C 1.31879 * 121.72569 * 359.97438 * 17 5 4 19 19 C 1.50703 * 119.61741 * 179.97438 * 18 17 5 20 20 H 1.09003 * 109.46968 * 89.99785 * 1 2 3 21 21 H 1.09002 * 109.46977 * 209.99446 * 1 2 3 22 22 H 1.08994 * 109.47024 * 329.99906 * 1 2 3 23 23 H 1.08002 * 120.79244 * 0.03059 * 3 2 1 24 24 H 1.07998 * 120.41760 * 180.27499 * 4 3 2 25 25 H 1.09004 * 109.46631 * 179.97438 * 8 6 5 26 26 H 1.08997 * 109.46656 * 299.99364 * 8 6 5 27 27 H 1.08995 * 109.47263 * 59.99846 * 8 6 5 28 28 H 0.97006 * 119.99738 * 180.02562 * 12 11 9 29 29 H 1.09002 * 109.47409 * 89.99775 * 19 18 17 30 30 H 1.08999 * 109.47462 * 209.99888 * 19 18 17 31 31 H 1.08998 * 109.46992 * 330.00348 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5946 1.1475 0.0053 5 6 4.2256 -0.0822 0.0051 6 6 5.7312 -0.1468 0.0103 7 1 6.0528 -1.0938 0.4439 8 6 6.2884 1.0102 0.8421 9 6 6.2435 -0.0417 -1.4031 10 1 5.5481 0.0611 -2.2231 11 6 7.5996 -0.0779 -1.6494 12 7 8.4461 -0.2036 -0.6508 13 14 8.2343 0.0517 -3.4014 14 1 7.7966 1.3417 -3.9924 15 1 9.7180 -0.0118 -3.3963 16 1 7.6931 -1.0714 -4.2083 17 7 3.5255 -1.1996 -0.0007 18 6 2.2067 -1.1915 -0.0059 19 6 1.4540 -2.4971 -0.0129 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8901 0.5138 22 1 -0.3633 0.8899 0.5138 23 1 1.6890 2.1424 0.0005 24 1 4.1735 2.0592 0.0100 25 1 7.3774 0.9633 0.8462 26 1 5.9669 1.9571 0.4084 27 1 5.9179 0.9342 1.8643 28 1 9.4002 -0.2286 -0.8241 29 1 1.2685 -2.8152 1.0130 30 1 0.5035 -2.3658 -0.5301 31 1 2.0456 -3.2548 -0.5267 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259937212.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:08 Heat of formation + Delta-G solvation = 13.319928 kcal Electronic energy + Delta-G solvation = -13002.945231 eV Core-core repulsion = 10862.570248 eV Total energy + Delta-G solvation = -2140.374984 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.74987 -35.03836 -32.77012 -32.33568 -30.15094 -27.99521 -25.56077 -25.15309 -22.23443 -21.72967 -19.44148 -16.26334 -15.98357 -15.40468 -14.53725 -14.25002 -13.93580 -12.98835 -12.84393 -12.65371 -12.49658 -12.15895 -11.79105 -11.72899 -11.46317 -11.05264 -10.89853 -10.69852 -10.32555 -10.07095 -9.75231 -9.19335 -8.93472 -8.57824 -8.30904 -7.80042 -6.00219 -4.06639 1.83692 1.98302 3.33111 3.36937 3.40587 4.37464 4.56533 4.94919 5.14614 5.29586 5.31479 5.42520 5.60518 5.72469 5.88313 5.94491 6.01357 6.06096 6.12099 6.43129 6.50088 6.79188 6.81783 6.93150 7.01573 7.19656 7.55212 7.69420 7.89293 8.07154 8.36171 8.93286 8.93825 9.56746 11.05810 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.044014 B = 0.008658 C = 0.008344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.007483 B = 3233.339428 C = 3355.003985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.176 4.176 3 C -0.081 4.081 4 C -0.176 4.176 5 C 0.180 3.820 6 C 0.082 3.918 7 H 0.047 0.953 8 C -0.135 4.135 9 C -0.502 4.502 10 H 0.053 0.947 11 C 0.063 3.937 12 N -0.890 5.890 13 Si 0.896 3.104 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.277 1.277 17 N -0.486 5.486 18 C 0.120 3.880 19 C -0.100 4.100 20 H 0.063 0.937 21 H 0.064 0.936 22 H 0.059 0.941 23 H 0.122 0.878 24 H 0.133 0.867 25 H 0.089 0.911 26 H 0.031 0.969 27 H 0.010 0.990 28 H 0.262 0.738 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.137 1.179 1.723 12.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.179 4.179 3 C -0.106 4.106 4 C -0.196 4.196 5 C 0.043 3.957 6 C 0.063 3.937 7 H 0.065 0.935 8 C -0.193 4.193 9 C -0.541 4.541 10 H 0.071 0.929 11 C -0.138 4.138 12 N -0.528 5.528 13 Si 0.724 3.276 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 N -0.195 5.195 18 C -0.019 4.019 19 C -0.157 4.157 20 H 0.081 0.919 21 H 0.083 0.917 22 H 0.078 0.922 23 H 0.140 0.860 24 H 0.151 0.849 25 H 0.108 0.892 26 H 0.050 0.950 27 H 0.029 0.971 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.501 0.359 1.763 11.641 hybrid contribution -0.037 1.002 -1.004 1.419 sum -11.539 1.361 0.759 11.643 Atomic orbital electron populations 1.20626 0.91348 1.02126 1.01638 1.20464 0.96540 0.93976 1.06875 1.21353 0.94333 0.97274 0.97681 1.22062 0.94181 1.00225 1.03145 1.22206 0.98791 0.86929 0.87801 1.17838 0.82188 0.96822 0.96837 0.93478 1.21872 1.04671 0.97633 0.95171 1.20873 0.91543 1.50554 0.91088 0.92852 1.24913 0.96725 0.95006 0.97165 1.69874 1.02424 1.50076 1.30445 0.86588 0.77579 0.78671 0.84779 1.20271 1.21163 1.20235 1.67494 1.06547 1.32199 1.13247 1.21098 0.90371 0.94352 0.96052 1.20664 0.98861 0.93957 1.02260 0.91856 0.91690 0.92192 0.86044 0.84902 0.89206 0.94982 0.97091 0.92801 0.91142 0.91313 0.90769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.19 9.20 36.01 0.33 -0.86 16 2 C -0.18 -2.93 5.90 -104.48 -0.62 -3.55 16 3 C -0.08 -1.39 9.86 -39.27 -0.39 -1.78 16 4 C -0.18 -3.60 9.18 -39.44 -0.36 -3.96 16 5 C 0.18 4.24 5.73 -82.59 -0.47 3.77 16 6 C 0.08 2.16 2.62 -92.92 -0.24 1.92 16 7 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 8 C -0.14 -3.28 8.40 37.16 0.31 -2.97 16 9 C -0.50 -14.19 8.55 -34.44 -0.29 -14.48 16 10 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 11 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 12 N -0.89 -25.52 11.32 55.43 0.63 -24.89 16 13 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 N -0.49 -11.14 10.19 -5.74 -0.06 -11.20 16 18 C 0.12 2.24 6.78 -82.59 -0.56 1.68 16 19 C -0.10 -1.43 9.36 36.01 0.34 -1.09 16 20 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.06 0.68 6.74 -51.93 -0.35 0.33 16 22 H 0.06 0.63 8.09 -51.93 -0.42 0.20 16 23 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 24 H 0.13 2.59 6.31 -52.49 -0.33 2.26 16 25 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 26 H 0.03 0.72 6.49 -51.93 -0.34 0.38 16 27 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.80 6.71 -51.93 -0.35 0.45 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 258.45 15.07 3.89 3.89 Total: -1.00 -30.26 258.45 -6.79 -37.05 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -4.18 Total: -1.82 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -2.05 Total: -19.64 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.57 Total: -36.09 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.26 -6.79 -37.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259937212.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.371 kcal (2) G-P(sol) polarization free energy of solvation -30.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds