Wall clock time and date at job start Mon Mar 30 2020 02:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38675 * 120.41772 * 2 1 4 4 C 1.38630 * 118.41860 * 179.74920 * 3 2 1 5 5 C 1.38224 * 119.16347 * 0.25530 * 4 3 2 6 6 C 1.50700 * 119.62022 * 179.97438 * 5 4 3 7 7 H 1.09006 * 109.47131 * 154.99527 * 6 5 4 8 8 C 1.53007 * 109.46787 * 35.00178 * 6 5 4 9 9 C 1.50697 * 109.47381 * 275.00093 * 6 5 4 10 10 H 1.08003 * 119.99240 * 359.97438 * 9 6 5 11 11 C 1.37878 * 120.00423 * 180.02562 * 9 6 5 12 12 N 1.31514 * 119.99382 * 359.97438 * 11 9 6 13 13 Si 1.86790 * 120.00049 * 179.97438 * 11 9 6 14 14 H 1.48498 * 109.47399 * 59.99835 * 13 11 9 15 15 H 1.48503 * 109.46969 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47207 * 299.99725 * 13 11 9 17 17 N 1.31857 * 120.76155 * 0.02562 * 5 4 3 18 18 C 1.31879 * 121.72569 * 359.97438 * 17 5 4 19 19 C 1.50703 * 119.61741 * 179.97438 * 18 17 5 20 20 H 1.09003 * 109.46968 * 89.99785 * 1 2 3 21 21 H 1.09002 * 109.46977 * 209.99446 * 1 2 3 22 22 H 1.08994 * 109.47024 * 329.99906 * 1 2 3 23 23 H 1.08002 * 120.79244 * 0.03059 * 3 2 1 24 24 H 1.07998 * 120.41760 * 180.27499 * 4 3 2 25 25 H 1.09004 * 109.46631 * 179.97438 * 8 6 5 26 26 H 1.08997 * 109.46656 * 299.99364 * 8 6 5 27 27 H 1.08995 * 109.47263 * 59.99846 * 8 6 5 28 28 H 0.97006 * 119.99738 * 180.02562 * 12 11 9 29 29 H 1.09002 * 109.47409 * 89.99775 * 19 18 17 30 30 H 1.08999 * 109.47462 * 209.99888 * 19 18 17 31 31 H 1.08998 * 109.46992 * 330.00348 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5946 1.1475 0.0053 5 6 4.2256 -0.0822 0.0051 6 6 5.7312 -0.1468 0.0103 7 1 6.0528 -1.0938 0.4439 8 6 6.2884 1.0102 0.8421 9 6 6.2435 -0.0417 -1.4031 10 1 5.5481 0.0611 -2.2231 11 6 7.5996 -0.0779 -1.6494 12 7 8.4461 -0.2036 -0.6508 13 14 8.2343 0.0517 -3.4014 14 1 7.7966 1.3417 -3.9924 15 1 9.7180 -0.0118 -3.3963 16 1 7.6931 -1.0714 -4.2083 17 7 3.5255 -1.1996 -0.0007 18 6 2.2067 -1.1915 -0.0059 19 6 1.4540 -2.4971 -0.0129 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8901 0.5138 22 1 -0.3633 0.8899 0.5138 23 1 1.6890 2.1424 0.0005 24 1 4.1735 2.0592 0.0100 25 1 7.3774 0.9633 0.8462 26 1 5.9669 1.9571 0.4084 27 1 5.9179 0.9342 1.8643 28 1 9.4002 -0.2286 -0.8241 29 1 1.2685 -2.8152 1.0130 30 1 0.5035 -2.3658 -0.5301 31 1 2.0456 -3.2548 -0.5267 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259937212.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:08 Heat of formation + Delta-G solvation = -4.897913 kcal Electronic energy + Delta-G solvation = -13003.735216 eV Core-core repulsion = 10862.570248 eV Total energy + Delta-G solvation = -2141.164969 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.23821 -36.82632 -34.45535 -33.82052 -31.97572 -29.20581 -27.27322 -26.98891 -23.86126 -23.17834 -21.16101 -18.38237 -17.50700 -17.05118 -16.31077 -15.58946 -15.42344 -14.74895 -14.40703 -13.89669 -13.63038 -13.48163 -13.34874 -13.23007 -12.90762 -12.83046 -12.62794 -12.49471 -12.24560 -12.00025 -11.58278 -11.13530 -10.54685 -10.48408 -10.05881 -9.30483 -8.13626 -6.28994 0.36141 0.54065 1.38989 1.41162 1.49283 2.39757 2.99862 3.12492 3.55356 3.94979 4.07504 4.18572 4.29570 4.68177 4.71787 4.75800 4.81182 4.86886 4.91995 4.94332 5.06548 5.11775 5.22356 5.31373 5.42715 5.46399 5.56290 5.84407 5.96972 6.07614 6.26354 6.76166 7.36005 7.40877 8.91117 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.044014 B = 0.008658 C = 0.008344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.007483 B = 3233.339428 C = 3355.003985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.164 4.164 3 C -0.076 4.076 4 C -0.188 4.188 5 C 0.141 3.859 6 C 0.083 3.917 7 H 0.000 1.000 8 C -0.121 4.121 9 C -0.521 4.521 10 H 0.041 0.959 11 C 0.017 3.983 12 N -0.915 5.915 13 Si 0.960 3.040 14 H -0.267 1.267 15 H -0.276 1.276 16 H -0.277 1.277 17 N -0.528 5.528 18 C 0.098 3.902 19 C -0.097 4.097 20 H 0.080 0.920 21 H 0.083 0.917 22 H 0.081 0.919 23 H 0.163 0.837 24 H 0.135 0.865 25 H 0.064 0.936 26 H 0.044 0.956 27 H 0.025 0.975 28 H 0.265 0.735 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.806 2.020 1.095 14.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.165 4.165 3 C -0.102 4.102 4 C -0.208 4.208 5 C 0.005 3.995 6 C 0.064 3.936 7 H 0.018 0.982 8 C -0.179 4.179 9 C -0.560 4.560 10 H 0.059 0.941 11 C -0.183 4.183 12 N -0.554 5.554 13 Si 0.784 3.216 14 H -0.192 1.192 15 H -0.201 1.201 16 H -0.203 1.203 17 N -0.238 5.238 18 C -0.040 4.040 19 C -0.154 4.154 20 H 0.099 0.901 21 H 0.101 0.899 22 H 0.100 0.900 23 H 0.181 0.819 24 H 0.152 0.848 25 H 0.083 0.917 26 H 0.063 0.937 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.121 0.879 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.174 1.205 1.142 14.271 hybrid contribution 0.663 0.693 -0.768 1.228 sum -13.511 1.898 0.374 13.648 Atomic orbital electron populations 1.20752 0.87213 1.04225 1.03312 1.21059 0.99354 0.92740 1.03393 1.21813 0.92952 0.99503 0.95917 1.22084 0.96044 0.98823 1.03866 1.21779 0.97387 0.88723 0.91647 1.17634 0.85141 0.95015 0.95843 0.98153 1.21671 1.02788 0.97598 0.95883 1.21090 0.91895 1.51103 0.91901 0.94076 1.25716 0.96813 0.94478 1.01244 1.70001 1.02671 1.50335 1.32361 0.85592 0.77308 0.78840 0.79815 1.19204 1.20136 1.20250 1.67366 1.09067 1.32648 1.14705 1.21880 0.89278 0.97279 0.95557 1.20779 0.99473 0.91451 1.03682 0.90114 0.89854 0.90008 0.81899 0.84770 0.91709 0.93723 0.95629 0.92589 0.89414 0.87861 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.80 9.20 71.24 0.66 -1.15 16 2 C -0.16 -4.90 5.90 -19.77 -0.12 -5.02 16 3 C -0.08 -2.42 9.86 22.47 0.22 -2.20 16 4 C -0.19 -7.63 9.18 22.36 0.21 -7.42 16 5 C 0.14 6.86 5.73 42.55 0.24 7.10 16 6 C 0.08 4.59 2.62 -12.28 -0.03 4.56 16 7 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 8 C -0.12 -6.11 8.40 71.98 0.60 -5.51 16 9 C -0.52 -30.65 8.55 25.60 0.22 -30.43 16 10 H 0.04 2.44 7.74 -2.91 -0.02 2.42 16 11 C 0.02 0.95 5.30 84.65 0.45 1.40 16 12 N -0.91 -54.17 11.32 21.45 0.24 -53.92 16 13 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 14 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 15 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 16 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 17 N -0.53 -24.80 10.19 -172.08 -1.75 -26.56 16 18 C 0.10 3.55 6.78 42.54 0.29 3.84 16 19 C -0.10 -2.54 9.36 71.24 0.67 -1.88 16 20 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 21 H 0.08 1.27 6.74 -2.39 -0.02 1.26 16 22 H 0.08 1.21 8.09 -2.39 -0.02 1.19 16 23 H 0.16 3.73 8.06 -2.91 -0.02 3.70 16 24 H 0.13 5.21 6.31 -2.91 -0.02 5.19 16 25 H 0.06 3.56 6.07 -2.38 -0.01 3.55 16 26 H 0.04 2.07 6.49 -2.39 -0.02 2.05 16 27 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 29 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.10 1.96 6.71 -2.39 -0.02 1.95 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -68.99 258.45 5.03 -63.96 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 1.11 Total: 6.20 kcal Atomic # 6 Polarization: -40.10 SS G_CDS: 3.40 Total: -36.70 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: -1.51 Total: -80.48 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -68.99 5.03 -63.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259937212.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.066 kcal (2) G-P(sol) polarization free energy of solvation -68.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds