Wall clock time and date at job start Mon Mar 30 2020 02:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38122 * 119.96572 * 2 1 4 4 C 1.38887 * 119.92548 * 180.02562 * 3 2 1 5 5 N 1.39678 * 120.07292 * 179.97438 * 4 3 2 6 6 C 1.38928 * 119.85233 * 359.97438 * 4 3 2 7 7 C 1.38085 * 119.92559 * 359.72346 * 6 4 3 8 8 C 1.50699 * 119.96594 * 180.29413 * 7 6 4 9 9 H 1.09002 * 109.46932 * 180.25446 * 8 7 6 10 10 C 1.53000 * 109.46860 * 60.25818 * 8 7 6 11 11 C 1.50701 * 109.47230 * 300.25873 * 8 7 6 12 12 H 1.07999 * 120.00143 * 35.01509 * 11 8 7 13 13 C 1.37874 * 119.99691 * 215.02241 * 11 8 7 14 14 N 1.31511 * 120.00079 * 184.91625 * 13 11 8 15 15 Si 1.86801 * 120.00124 * 4.91143 * 13 11 8 16 16 H 1.48504 * 109.47185 * 84.84105 * 15 13 11 17 17 H 1.48506 * 109.47097 * 204.83584 * 15 13 11 18 18 H 1.48495 * 109.47125 * 324.83656 * 15 13 11 19 19 C 1.38259 * 119.95976 * 180.02562 * 2 1 3 20 20 H 1.09002 * 109.47155 * 269.98444 * 1 2 3 21 21 H 1.09000 * 109.46878 * 29.98103 * 1 2 3 22 22 H 1.08997 * 109.47028 * 149.98568 * 1 2 3 23 23 H 1.08000 * 120.03443 * 359.97438 * 3 2 1 24 24 H 0.96996 * 120.00083 * 0.02562 * 5 4 3 25 25 H 0.96997 * 119.99667 * 180.02562 * 5 4 3 26 26 H 1.08005 * 120.03763 * 180.02562 * 6 4 3 27 27 H 1.08998 * 109.47108 * 54.97661 * 10 8 7 28 28 H 1.08993 * 109.47146 * 174.98036 * 10 8 7 29 29 H 1.09000 * 109.47328 * 294.98055 * 10 8 7 30 30 H 0.97000 * 120.00289 * 179.97438 * 14 13 11 31 31 H 1.08004 * 119.92828 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1966 0.0000 4 6 3.5858 1.1956 -0.0005 5 7 4.2866 2.4039 -0.0011 6 6 4.2765 -0.0098 -0.0005 7 6 3.5806 -1.2025 0.0058 8 6 4.3289 -2.5105 0.0125 9 1 3.6173 -3.3362 0.0123 10 6 5.2035 -2.5913 1.2653 11 6 5.1997 -2.5975 -1.2144 12 1 5.6671 -1.7074 -1.6090 13 6 5.3994 -3.8133 -1.8332 14 7 6.2348 -3.9070 -2.8446 15 14 4.4834 -5.3274 -1.2350 16 1 3.1435 -5.3797 -1.8732 17 1 5.2518 -6.5457 -1.5966 18 1 4.3269 -5.2606 0.2402 19 6 2.1975 -1.1978 -0.0005 20 1 -0.3633 -0.0003 1.0277 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5140 23 1 1.6570 2.1319 -0.0004 24 1 3.8033 3.2448 -0.0007 25 1 5.2566 2.4019 -0.0018 26 1 5.3566 -0.0141 -0.0005 27 1 4.5855 -2.4392 2.1502 28 1 5.6757 -3.5723 1.3161 29 1 5.9723 -1.8198 1.2221 30 1 6.3756 -4.7624 -3.2797 31 1 1.6557 -2.1321 -0.0005 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259943299.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:13 Heat of formation + Delta-G solvation = 3.236853 kcal Electronic energy + Delta-G solvation = -12995.908909 eV Core-core repulsion = 10855.096691 eV Total energy + Delta-G solvation = -2140.812219 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.95902 -34.97677 -34.04204 -31.91569 -29.88561 -27.93891 -26.26642 -25.12846 -22.31766 -20.88067 -19.04241 -16.99353 -16.07577 -15.85311 -15.21213 -14.25542 -13.96463 -13.38803 -12.95808 -12.60485 -12.38618 -12.15853 -12.11917 -11.71989 -11.40551 -11.04965 -10.82912 -10.75811 -10.43595 -9.76023 -9.70693 -9.46780 -9.02669 -8.50113 -7.73799 -6.92963 -6.04984 -4.03042 2.17070 2.36419 3.31599 3.39241 3.41194 4.30818 4.44492 4.59980 5.28809 5.38321 5.50638 5.73323 5.89762 5.99301 6.10089 6.14818 6.33774 6.34918 6.53470 6.57602 6.81741 6.87758 6.99582 7.12650 7.26995 7.31695 7.58746 7.67237 7.83568 8.07225 8.18586 8.55653 9.00463 9.57343 11.08161 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.034250 B = 0.010385 C = 0.009096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.332514 B = 2695.640151 C = 3077.517843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.050 4.050 3 C -0.222 4.222 4 C 0.209 3.791 5 N -0.886 5.886 6 C -0.186 4.186 7 C 0.019 3.981 8 C 0.036 3.964 9 H 0.038 0.962 10 C -0.132 4.132 11 C -0.501 4.501 12 H 0.076 0.924 13 C 0.070 3.930 14 N -0.901 5.901 15 Si 0.875 3.125 16 H -0.275 1.275 17 H -0.290 1.290 18 H -0.264 1.264 19 C -0.185 4.185 20 H 0.063 0.937 21 H 0.058 0.942 22 H 0.062 0.938 23 H 0.106 0.894 24 H 0.390 0.610 25 H 0.394 0.606 26 H 0.118 0.882 27 H 0.024 0.976 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.263 0.737 31 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.412 8.204 6.773 12.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.050 4.050 3 C -0.245 4.245 4 C 0.106 3.894 5 N -0.426 5.426 6 C -0.209 4.209 7 C 0.018 3.982 8 C 0.017 3.983 9 H 0.056 0.944 10 C -0.190 4.190 11 C -0.539 4.539 12 H 0.094 0.906 13 C -0.131 4.131 14 N -0.539 5.539 15 Si 0.702 3.298 16 H -0.201 1.201 17 H -0.216 1.216 18 H -0.188 1.188 19 C -0.205 4.205 20 H 0.082 0.918 21 H 0.077 0.923 22 H 0.081 0.919 23 H 0.124 0.876 24 H 0.217 0.783 25 H 0.222 0.778 26 H 0.136 0.864 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.354 8.014 6.629 12.738 hybrid contribution -0.175 -0.510 0.052 0.541 sum -7.529 7.504 6.681 12.555 Atomic orbital electron populations 1.20728 0.92275 1.02044 1.01500 1.19476 0.94880 0.92860 0.97823 1.20120 0.91870 0.97184 1.15288 1.17768 0.91175 0.86344 0.94120 1.42368 1.08583 1.04919 1.86694 1.20412 0.99564 0.90300 1.10596 1.20089 0.92748 0.95890 0.89437 1.18360 0.94270 0.90195 0.95442 0.94387 1.21970 0.99448 1.00796 0.96782 1.20952 1.27941 0.95792 1.09170 0.90587 1.25044 0.94823 0.98614 0.94656 1.69896 1.35459 1.25561 1.22943 0.86894 0.80291 0.82726 0.79886 1.20119 1.21597 1.18840 1.20714 0.93972 0.96630 1.09219 0.91846 0.92295 0.91864 0.87591 0.78314 0.77800 0.86443 0.95727 0.93706 0.93407 0.92675 0.87303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.01 36.01 0.36 -1.10 16 2 C -0.05 -0.86 5.88 -104.65 -0.62 -1.48 16 3 C -0.22 -3.73 9.55 -39.38 -0.38 -4.11 16 4 C 0.21 3.67 6.75 -83.79 -0.57 3.10 16 5 N -0.89 -11.93 9.09 32.41 0.29 -11.63 16 6 C -0.19 -3.81 8.49 -39.38 -0.33 -4.14 16 7 C 0.02 0.43 4.77 -104.65 -0.50 -0.07 16 8 C 0.04 0.87 2.14 -92.92 -0.20 0.67 16 9 H 0.04 0.92 5.02 -51.93 -0.26 0.66 16 10 C -0.13 -2.87 8.92 37.16 0.33 -2.53 16 11 C -0.50 -14.09 8.63 -34.44 -0.30 -14.38 16 12 H 0.08 2.32 7.62 -52.49 -0.40 1.92 16 13 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 14 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 15 Si 0.87 21.65 26.99 -169.99 -4.59 17.06 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 18 H -0.26 -6.22 6.82 56.52 0.39 -5.83 16 19 C -0.19 -3.71 9.32 -39.55 -0.37 -4.07 16 20 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 22 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 23 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 24 H 0.39 4.21 8.84 -40.82 -0.36 3.85 16 25 H 0.39 4.82 8.84 -40.82 -0.36 4.46 16 26 H 0.12 2.43 7.55 -52.48 -0.40 2.03 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.05 1.00 7.58 -51.93 -0.39 0.61 16 30 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.11 2.07 7.94 -52.48 -0.42 1.65 16 LS Contribution 261.36 15.07 3.94 3.94 Total: -1.00 -30.93 261.36 -6.51 -37.44 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -4.27 Total: 6.23 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: -2.66 Total: -26.19 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 1.07 Total: -38.48 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.59 Total: 17.06 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.93 -6.51 -37.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259943299.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.679 kcal (2) G-P(sol) polarization free energy of solvation -30.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds