Wall clock time and date at job start Mon Mar 30 2020 02:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38122 * 119.96572 * 2 1 4 4 C 1.38887 * 119.92548 * 180.02562 * 3 2 1 5 5 N 1.39678 * 120.07292 * 179.97438 * 4 3 2 6 6 C 1.38928 * 119.85233 * 359.97438 * 4 3 2 7 7 C 1.38085 * 119.92559 * 359.72346 * 6 4 3 8 8 C 1.50699 * 119.96594 * 180.29413 * 7 6 4 9 9 H 1.09002 * 109.46932 * 180.25446 * 8 7 6 10 10 C 1.53000 * 109.46860 * 60.25818 * 8 7 6 11 11 C 1.50701 * 109.47230 * 300.25873 * 8 7 6 12 12 H 1.07999 * 120.00143 * 35.01509 * 11 8 7 13 13 C 1.37874 * 119.99691 * 215.02241 * 11 8 7 14 14 N 1.31511 * 120.00079 * 184.91625 * 13 11 8 15 15 Si 1.86801 * 120.00124 * 4.91143 * 13 11 8 16 16 H 1.48504 * 109.47185 * 84.84105 * 15 13 11 17 17 H 1.48506 * 109.47097 * 204.83584 * 15 13 11 18 18 H 1.48495 * 109.47125 * 324.83656 * 15 13 11 19 19 C 1.38259 * 119.95976 * 180.02562 * 2 1 3 20 20 H 1.09002 * 109.47155 * 269.98444 * 1 2 3 21 21 H 1.09000 * 109.46878 * 29.98103 * 1 2 3 22 22 H 1.08997 * 109.47028 * 149.98568 * 1 2 3 23 23 H 1.08000 * 120.03443 * 359.97438 * 3 2 1 24 24 H 0.96996 * 120.00083 * 0.02562 * 5 4 3 25 25 H 0.96997 * 119.99667 * 180.02562 * 5 4 3 26 26 H 1.08005 * 120.03763 * 180.02562 * 6 4 3 27 27 H 1.08998 * 109.47108 * 54.97661 * 10 8 7 28 28 H 1.08993 * 109.47146 * 174.98036 * 10 8 7 29 29 H 1.09000 * 109.47328 * 294.98055 * 10 8 7 30 30 H 0.97000 * 120.00289 * 179.97438 * 14 13 11 31 31 H 1.08004 * 119.92828 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1966 0.0000 4 6 3.5858 1.1956 -0.0005 5 7 4.2866 2.4039 -0.0011 6 6 4.2765 -0.0098 -0.0005 7 6 3.5806 -1.2025 0.0058 8 6 4.3289 -2.5105 0.0125 9 1 3.6173 -3.3362 0.0123 10 6 5.2035 -2.5913 1.2653 11 6 5.1997 -2.5975 -1.2144 12 1 5.6671 -1.7074 -1.6090 13 6 5.3994 -3.8133 -1.8332 14 7 6.2348 -3.9070 -2.8446 15 14 4.4834 -5.3274 -1.2350 16 1 3.1435 -5.3797 -1.8732 17 1 5.2518 -6.5457 -1.5966 18 1 4.3269 -5.2606 0.2402 19 6 2.1975 -1.1978 -0.0005 20 1 -0.3633 -0.0003 1.0277 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5140 23 1 1.6570 2.1319 -0.0004 24 1 3.8033 3.2448 -0.0007 25 1 5.2566 2.4019 -0.0018 26 1 5.3566 -0.0141 -0.0005 27 1 4.5855 -2.4392 2.1502 28 1 5.6757 -3.5723 1.3161 29 1 5.9723 -1.8198 1.2221 30 1 6.3756 -4.7624 -3.2797 31 1 1.6557 -2.1321 -0.0005 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259943299.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:13 Heat of formation + Delta-G solvation = -16.757143 kcal Electronic energy + Delta-G solvation = -12996.775914 eV Core-core repulsion = 10855.096691 eV Total energy + Delta-G solvation = -2141.679223 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.39777 -36.65687 -35.41076 -33.92650 -31.40713 -29.34080 -27.54214 -27.18900 -23.99277 -22.25709 -20.72273 -18.99434 -17.45373 -17.32444 -16.65308 -16.17012 -15.41646 -14.75592 -14.60221 -14.26841 -14.09161 -13.76228 -13.47428 -13.02612 -12.87028 -12.84904 -12.66771 -12.31083 -12.05476 -11.76266 -11.27307 -11.18918 -10.85482 -10.66478 -9.23373 -8.27594 -8.25073 -6.29274 0.73179 0.90544 1.36069 1.36531 1.47838 2.36556 3.03888 3.15098 3.19269 4.08990 4.14671 4.45339 4.56902 4.66310 4.68143 4.83525 4.90595 4.93918 4.95173 5.14002 5.21191 5.30056 5.39884 5.58962 5.60521 5.68950 5.87365 6.12148 6.17684 6.41186 6.73355 6.77307 7.13700 7.34449 8.89984 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.034250 B = 0.010385 C = 0.009096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.332514 B = 2695.640151 C = 3077.517843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.045 4.045 3 C -0.222 4.222 4 C 0.212 3.788 5 N -0.870 5.870 6 C -0.213 4.213 7 C -0.008 4.008 8 C 0.035 3.965 9 H 0.038 0.962 10 C -0.126 4.126 11 C -0.500 4.500 12 H 0.033 0.967 13 C 0.009 3.991 14 N -0.951 5.951 15 Si 0.939 3.061 16 H -0.267 1.267 17 H -0.287 1.287 18 H -0.243 1.243 19 C -0.209 4.209 20 H 0.083 0.917 21 H 0.079 0.921 22 H 0.065 0.935 23 H 0.141 0.859 24 H 0.407 0.593 25 H 0.401 0.599 26 H 0.099 0.901 27 H 0.050 0.950 28 H 0.039 0.961 29 H 0.043 0.957 30 H 0.265 0.735 31 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.796 9.095 8.151 15.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.046 4.046 3 C -0.244 4.244 4 C 0.108 3.892 5 N -0.411 5.411 6 C -0.236 4.236 7 C -0.009 4.009 8 C 0.016 3.984 9 H 0.056 0.944 10 C -0.184 4.184 11 C -0.538 4.538 12 H 0.051 0.949 13 C -0.187 4.187 14 N -0.592 5.592 15 Si 0.763 3.237 16 H -0.193 1.193 17 H -0.213 1.213 18 H -0.166 1.166 19 C -0.229 4.229 20 H 0.101 0.899 21 H 0.098 0.902 22 H 0.084 0.916 23 H 0.158 0.842 24 H 0.237 0.763 25 H 0.229 0.771 26 H 0.117 0.883 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.738 8.955 8.029 15.475 hybrid contribution 0.583 -0.591 -0.387 0.916 sum -9.155 8.364 7.642 14.566 Atomic orbital electron populations 1.20799 0.89130 1.03268 1.03125 1.19932 0.97173 0.91979 0.95495 1.20535 0.91482 0.98534 1.13868 1.17852 0.91932 0.86570 0.92895 1.42318 1.09066 1.04443 1.85268 1.20344 0.98853 0.91503 1.12914 1.19986 0.93827 0.95160 0.91955 1.18308 0.94005 0.91833 0.94260 0.94419 1.21846 0.99340 1.00386 0.96803 1.21161 1.27935 0.94235 1.10482 0.94899 1.25927 0.95767 1.02143 0.94899 1.70050 1.37663 1.26524 1.24932 0.85853 0.78962 0.78334 0.80558 1.19253 1.21312 1.16631 1.20847 0.93230 0.98125 1.10690 0.89859 0.90221 0.91565 0.84164 0.76317 0.77102 0.88275 0.93098 0.94147 0.93822 0.92618 0.86996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.43 10.01 71.24 0.71 -1.71 16 2 C -0.05 -1.44 5.88 -19.88 -0.12 -1.56 16 3 C -0.22 -6.73 9.55 22.40 0.21 -6.52 16 4 C 0.21 7.13 6.75 38.21 0.26 7.39 16 5 N -0.87 -21.57 9.09 -51.37 -0.47 -22.04 16 6 C -0.21 -8.82 8.49 22.40 0.19 -8.63 16 7 C -0.01 -0.37 4.77 -19.88 -0.09 -0.46 16 8 C 0.03 1.69 2.14 -12.29 -0.03 1.66 16 9 H 0.04 1.80 5.02 -2.39 -0.01 1.79 16 10 C -0.13 -5.44 8.92 71.98 0.64 -4.79 16 11 C -0.50 -29.20 8.63 25.60 0.22 -28.98 16 12 H 0.03 2.14 7.62 -2.91 -0.02 2.12 16 13 C 0.01 0.53 5.47 84.65 0.46 1.00 16 14 N -0.95 -60.50 13.96 21.45 0.30 -60.20 16 15 Si 0.94 44.93 26.99 68.60 1.85 46.78 16 16 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 17 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 18 H -0.24 -10.70 6.82 99.48 0.68 -10.02 16 19 C -0.21 -8.11 9.32 22.29 0.21 -7.90 16 20 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 21 H 0.08 1.50 8.08 -2.39 -0.02 1.48 16 22 H 0.07 1.48 8.08 -2.39 -0.02 1.46 16 23 H 0.14 3.28 8.06 -2.91 -0.02 3.25 16 24 H 0.41 7.45 8.84 -92.71 -0.82 6.63 16 25 H 0.40 9.26 8.84 -92.71 -0.82 8.44 16 26 H 0.10 4.32 7.55 -2.91 -0.02 4.29 16 27 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.04 1.87 7.58 -2.39 -0.02 1.85 16 30 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 31 H 0.11 4.13 7.94 -2.91 -0.02 4.11 16 Total: -1.00 -68.66 261.36 3.82 -64.84 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -0.54 Total: 21.14 kcal Atomic # 6 Polarization: -53.19 SS G_CDS: 2.67 Total: -50.52 kcal Atomic # 7 Polarization: -82.07 SS G_CDS: -0.17 Total: -82.24 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.85 Total: 46.78 kcal Total: -68.66 3.82 -64.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259943299.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.084 kcal (2) G-P(sol) polarization free energy of solvation -68.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds