Wall clock time and date at job start Mon Mar 30 2020 02:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46843 * 110.99463 * 2 1 4 4 C 1.53039 * 109.52181 * 174.16373 * 3 2 1 5 5 C 1.53123 * 109.28050 * 59.17652 * 4 3 2 6 6 H 1.09003 * 109.51950 * 62.31301 * 5 4 3 7 7 C 1.50701 * 109.52382 * 182.44671 * 5 4 3 8 8 H 1.08002 * 119.99761 * 359.97438 * 7 5 4 9 9 C 1.37871 * 119.99694 * 180.27909 * 7 5 4 10 10 N 1.31514 * 120.00482 * 359.71466 * 9 7 5 11 11 Si 1.86801 * 119.99746 * 179.72062 * 9 7 5 12 12 H 1.48504 * 109.47266 * 60.00049 * 11 9 7 13 13 H 1.48504 * 109.46970 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47383 * 299.99456 * 11 9 7 15 15 C 1.53118 * 109.16048 * 302.34883 * 5 4 3 16 16 F 1.39895 * 109.50564 * 177.59426 * 15 5 4 17 17 F 1.39900 * 109.50398 * 297.71604 * 15 5 4 18 18 C 1.46847 * 110.99672 * 235.79305 * 2 1 3 19 19 H 1.08998 * 109.47496 * 60.00465 * 1 2 3 20 20 H 1.09006 * 109.46991 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47322 * 299.99612 * 1 2 3 22 22 H 1.08999 * 109.46714 * 54.14772 * 3 2 1 23 23 H 1.08998 * 109.45568 * 294.17027 * 3 2 1 24 24 H 1.09001 * 109.50048 * 299.23569 * 4 3 2 25 25 H 1.09001 * 109.50743 * 179.11899 * 4 3 2 26 26 H 0.96995 * 120.00207 * 179.97438 * 10 9 7 27 27 H 1.09003 * 109.46200 * 305.84952 * 18 2 1 28 28 H 1.08996 * 109.46684 * 65.83594 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3709 0.0000 4 6 3.5180 1.3343 0.1467 5 6 4.1187 0.5371 -1.0145 6 1 3.8895 1.0361 -1.9560 7 6 5.6132 0.4464 -0.8432 8 1 6.0883 0.9110 0.0082 9 6 6.3746 -0.2242 -1.7767 10 7 5.7961 -0.7897 -2.8136 11 14 8.2280 -0.3300 -1.5685 12 1 8.5442 -1.0143 -0.2890 13 1 8.8098 -1.0992 -2.6977 14 1 8.8033 1.0390 -1.5531 15 6 3.5181 -0.8714 -1.0209 16 9 4.0209 -1.5886 -2.1117 17 9 3.8559 -1.5287 0.1670 18 6 1.9952 -0.7707 -1.1338 19 1 -0.3634 0.5137 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.5633 1.9257 0.8330 23 1 1.7323 1.8607 -0.9376 24 1 3.7813 0.8569 1.0906 25 1 3.9098 2.3513 0.1309 26 1 6.3318 -1.2612 -3.4705 27 1 1.5634 -1.7715 -1.1243 28 1 1.7326 -0.2707 -2.0660 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260005426.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:39 Heat of formation + Delta-G solvation = -100.849337 kcal Electronic energy + Delta-G solvation = -14557.718191 eV Core-core repulsion = 11858.162926 eV Total energy + Delta-G solvation = -2699.555264 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.07764 -47.04936 -39.29755 -35.57505 -33.28970 -30.87717 -28.69697 -25.87287 -23.82381 -23.31793 -20.73281 -18.62907 -17.66604 -17.24514 -16.73787 -16.50870 -15.89652 -15.61621 -15.00178 -14.45665 -14.09985 -13.62003 -13.48224 -13.38212 -13.16574 -13.09371 -12.82989 -12.67566 -12.39600 -12.24615 -12.13491 -11.55454 -11.12307 -10.53996 -10.49001 -9.32544 -8.02546 -6.23159 1.40018 1.43331 1.50124 2.42118 2.84953 3.12497 3.35492 3.94672 4.01179 4.08592 4.25012 4.48523 4.54514 4.62482 4.67860 4.78041 4.84654 4.98208 5.01893 5.21377 5.30164 5.62501 5.79846 5.99927 6.13488 6.20332 6.75744 7.41363 8.90329 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.056847 B = 0.012585 C = 0.011492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.429594 B = 2224.392422 C = 2435.954364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.551 5.551 3 C 0.057 3.943 4 C -0.102 4.102 5 C 0.007 3.993 6 H 0.022 0.978 7 C -0.555 4.555 8 H 0.057 0.943 9 C 0.011 3.989 10 N -0.877 5.877 11 Si 0.957 3.043 12 H -0.277 1.277 13 H -0.283 1.283 14 H -0.265 1.265 15 C 0.281 3.719 16 F -0.181 7.181 17 F -0.222 7.222 18 C 0.027 3.973 19 H 0.033 0.967 20 H 0.074 0.926 21 H 0.090 0.910 22 H 0.103 0.897 23 H 0.037 0.963 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.256 0.744 27 H 0.089 0.911 28 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.938 2.627 3.472 9.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.276 5.276 3 C -0.070 4.070 4 C -0.140 4.140 5 C -0.012 4.012 6 H 0.040 0.960 7 C -0.592 4.592 8 H 0.075 0.925 9 C -0.192 4.192 10 N -0.513 5.513 11 Si 0.782 3.218 12 H -0.202 1.202 13 H -0.208 1.208 14 H -0.189 1.189 15 C 0.243 3.757 16 F -0.161 7.161 17 F -0.204 7.204 18 C -0.103 4.103 19 H 0.052 0.948 20 H 0.093 0.907 21 H 0.108 0.892 22 H 0.121 0.879 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.094 0.906 26 H 0.066 0.934 27 H 0.108 0.892 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.739 2.262 3.721 9.764 hybrid contribution 0.958 -0.111 -0.941 1.348 sum -7.781 2.150 2.780 8.537 Atomic orbital electron populations 1.22451 0.84594 1.02992 1.01917 1.61792 1.09725 1.14405 1.41667 1.22246 0.94941 0.88398 1.01418 1.21543 0.94251 1.00098 0.98074 1.19645 0.95840 0.89839 0.95905 0.95983 1.21212 0.92153 1.36787 1.09080 0.92493 1.25871 1.03282 0.94698 0.95340 1.70576 1.35552 1.33473 1.11728 0.85636 0.80140 0.78523 0.77506 1.20203 1.20818 1.18937 1.21838 0.92138 0.90607 0.71077 1.93134 1.88252 1.80557 1.54200 1.92804 1.94251 1.83593 1.49729 1.22933 0.92932 1.00465 0.93945 0.94807 0.90736 0.89185 0.87904 0.94519 0.92751 0.90632 0.93416 0.89224 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 9.59 127.69 1.22 1.88 15 2 N -0.55 -18.53 4.85 -922.58 -4.47 -23.00 15 3 C 0.06 1.85 5.46 86.33 0.47 2.32 15 4 C -0.10 -4.15 5.19 30.65 0.16 -3.99 15 5 C 0.01 0.35 1.97 -11.46 -0.02 0.33 15 6 H 0.02 1.20 8.14 -2.39 -0.02 1.18 15 7 C -0.55 -31.62 8.24 25.60 0.21 -31.41 15 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 15 9 C 0.01 0.62 5.24 84.65 0.44 1.06 15 10 N -0.88 -52.39 9.58 21.45 0.21 -52.19 15 11 Si 0.96 45.28 29.54 68.60 2.03 47.30 15 12 H -0.28 -13.00 7.11 99.48 0.71 -12.30 15 13 H -0.28 -13.06 7.11 99.48 0.71 -12.35 15 14 H -0.26 -11.89 7.11 99.48 0.71 -11.19 15 15 C 0.28 14.12 1.65 30.65 0.05 14.17 15 16 F -0.18 -10.32 12.85 44.97 0.58 -9.74 15 17 F -0.22 -11.86 16.25 44.97 0.73 -11.13 15 18 C 0.03 1.05 4.96 86.33 0.43 1.47 15 19 H 0.03 0.74 8.14 -2.39 -0.02 0.72 15 20 H 0.07 1.63 8.09 -2.38 -0.02 1.61 15 21 H 0.09 1.75 8.14 -2.39 -0.02 1.73 15 22 H 0.10 2.65 8.12 -2.39 -0.02 2.63 15 23 H 0.04 1.15 8.14 -2.39 -0.02 1.13 15 24 H 0.05 2.34 7.91 -2.39 -0.02 2.33 15 25 H 0.08 2.85 8.14 -2.39 -0.02 2.83 15 26 H 0.26 14.68 8.31 -92.71 -0.77 13.91 15 27 H 0.09 3.24 8.09 -2.39 -0.02 3.22 15 28 H 0.06 2.11 8.14 -2.39 -0.02 2.09 15 Total: -1.00 -65.39 233.80 3.17 -62.22 By element: Atomic # 1 Polarization: -0.42 SS G_CDS: 1.13 Total: 0.72 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: 2.97 Total: -14.17 kcal Atomic # 7 Polarization: -70.92 SS G_CDS: -4.27 Total: -75.19 kcal Atomic # 9 Polarization: -22.19 SS G_CDS: 1.31 Total: -20.88 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -65.39 3.17 -62.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260005426.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.631 kcal (2) G-P(sol) polarization free energy of solvation -65.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds