Wall clock time and date at job start Mon Mar 30 2020 02:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46842 * 111.00077 * 2 1 4 4 C 1.53041 * 109.52407 * 185.84059 * 3 2 1 5 5 C 1.53124 * 109.27510 * 300.81747 * 4 3 2 6 6 H 1.09000 * 109.52368 * 297.74991 * 5 4 3 7 7 C 1.50702 * 109.52279 * 177.55890 * 5 4 3 8 8 H 1.07993 * 120.00005 * 240.31793 * 7 5 4 9 9 C 1.37874 * 119.99868 * 60.31799 * 7 5 4 10 10 N 1.31519 * 120.00242 * 0.02562 * 9 7 5 11 11 Si 1.86801 * 119.99907 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47302 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47457 * 120.00040 * 11 9 7 14 14 H 1.48508 * 109.47009 * 239.99966 * 11 9 7 15 15 C 1.53123 * 109.15980 * 57.65355 * 5 4 3 16 16 F 1.39893 * 109.50240 * 182.40313 * 15 5 4 17 17 F 1.39904 * 109.49975 * 62.28829 * 15 5 4 18 18 C 1.46846 * 110.99717 * 124.20701 * 2 1 3 19 19 H 1.08992 * 109.47191 * 295.79430 * 1 2 3 20 20 H 1.09005 * 109.46582 * 55.79078 * 1 2 3 21 21 H 1.09001 * 109.47288 * 175.78757 * 1 2 3 22 22 H 1.09006 * 109.46447 * 305.84971 * 3 2 1 23 23 H 1.08994 * 109.46873 * 65.82005 * 3 2 1 24 24 H 1.08997 * 109.50282 * 60.75542 * 4 3 2 25 25 H 1.08997 * 109.50652 * 180.83934 * 4 3 2 26 26 H 0.96999 * 120.00348 * 180.02562 * 10 9 7 27 27 H 1.08999 * 109.46089 * 54.14588 * 18 2 1 28 28 H 1.08994 * 109.45639 * 294.17306 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1188 0.5369 1.0144 6 1 3.8887 1.0354 1.9560 7 6 5.6133 0.4462 0.8432 8 1 6.0884 -0.5190 0.7484 9 6 6.3741 1.5955 0.8076 10 7 5.7957 2.7710 0.9236 11 14 8.2266 1.4831 0.5947 12 1 8.6270 0.0571 0.4885 13 1 8.6276 2.2036 -0.6403 14 1 8.8979 2.0993 1.7673 15 6 3.5181 -0.8715 1.0209 16 9 4.0209 -1.5887 2.1118 17 9 3.8560 -1.5289 -0.1669 18 6 1.9952 -0.7707 1.1338 19 1 -0.3633 0.4471 0.9252 20 1 -0.3633 0.5778 -0.8499 21 1 -0.3634 -1.0249 -0.0755 22 1 1.5635 1.9257 -0.8331 23 1 1.7325 1.8609 0.9375 24 1 3.7814 0.8566 -1.0906 25 1 3.9099 2.3512 -0.1318 26 1 6.3309 3.5795 0.8982 27 1 1.5633 -1.7715 1.1243 28 1 1.7324 -0.2707 2.0659 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260005450.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:42 Heat of formation + Delta-G solvation = -104.459701 kcal Electronic energy + Delta-G solvation = -14336.423914 eV Core-core repulsion = 11636.712092 eV Total energy + Delta-G solvation = -2699.711821 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -47.77424 -45.76243 -37.83406 -33.89329 -31.11800 -29.41268 -27.16637 -24.27427 -22.29227 -21.65880 -19.08867 -16.77076 -16.28155 -15.54454 -15.44899 -14.58029 -14.32238 -14.17347 -13.52725 -12.72168 -12.63008 -12.21130 -12.11949 -11.89829 -11.78771 -11.49836 -11.05169 -11.03101 -10.76107 -10.53791 -10.19867 -9.87905 -9.09186 -8.99380 -8.43947 -7.97981 -6.09014 -4.14075 3.29280 3.36905 3.43832 4.15098 4.39885 4.73357 5.21435 5.30297 5.42381 5.44564 5.62386 5.75463 5.90937 5.97410 6.00969 6.20040 6.25958 6.40333 6.85728 7.05566 7.31477 7.37582 7.63828 7.75982 7.92457 8.20368 8.86760 9.50168 10.98134 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.045360 B = 0.012470 C = 0.010733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.129489 B = 2244.806994 C = 2608.061535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.536 5.536 3 C 0.049 3.951 4 C -0.107 4.107 5 C 0.017 3.983 6 H 0.048 0.952 7 C -0.511 4.511 8 H 0.063 0.937 9 C 0.064 3.936 10 N -0.892 5.892 11 Si 0.899 3.101 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.293 3.707 16 F -0.210 7.210 17 F -0.197 7.197 18 C 0.022 3.978 19 H 0.022 0.978 20 H 0.068 0.932 21 H 0.064 0.936 22 H 0.067 0.933 23 H 0.029 0.971 24 H 0.056 0.944 25 H 0.106 0.894 26 H 0.262 0.738 27 H 0.081 0.919 28 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.084 -2.686 -0.520 8.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.261 5.261 3 C -0.078 4.078 4 C -0.145 4.145 5 C -0.002 4.002 6 H 0.066 0.934 7 C -0.549 4.549 8 H 0.081 0.919 9 C -0.137 4.137 10 N -0.531 5.531 11 Si 0.727 3.273 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.210 1.210 15 C 0.257 3.743 16 F -0.191 7.191 17 F -0.178 7.178 18 C -0.108 4.108 19 H 0.040 0.960 20 H 0.087 0.913 21 H 0.082 0.918 22 H 0.086 0.914 23 H 0.047 0.953 24 H 0.075 0.925 25 H 0.124 0.876 26 H 0.072 0.928 27 H 0.099 0.901 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.861 -2.755 -0.949 8.384 hybrid contribution 0.686 0.250 0.678 0.996 sum -7.175 -2.506 -0.271 7.605 Atomic orbital electron populations 1.22335 0.87648 1.01754 1.00285 1.61839 1.07024 1.15347 1.41886 1.22429 0.98875 0.86958 0.99586 1.21695 0.89287 1.04495 0.99065 1.19690 0.96734 0.86534 0.97271 0.93420 1.21007 0.90252 0.93416 1.50182 0.91914 1.24900 0.98999 0.95147 0.94664 1.69860 1.35500 0.97394 1.50351 0.86409 0.84913 0.78357 0.77663 1.19581 1.20870 1.20959 1.21340 0.91216 0.90822 0.70945 1.92898 1.89284 1.81030 1.55930 1.92907 1.93739 1.83149 1.48006 1.22930 0.94528 0.99687 0.93635 0.95958 0.91313 0.91765 0.91447 0.95261 0.92534 0.87562 0.92829 0.90076 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.59 60.07 0.58 0.96 15 2 N -0.54 -9.64 4.85 -242.96 -1.18 -10.82 15 3 C 0.05 0.92 5.46 -3.83 -0.02 0.90 15 4 C -0.11 -2.49 4.99 -26.65 -0.13 -2.63 15 5 C 0.02 0.42 1.81 -91.64 -0.17 0.26 15 6 H 0.05 1.27 8.14 -51.93 -0.42 0.85 15 7 C -0.51 -14.33 8.06 -34.44 -0.28 -14.61 15 8 H 0.06 1.82 7.70 -52.49 -0.40 1.41 15 9 C 0.06 1.77 5.31 -17.82 -0.09 1.68 15 10 N -0.89 -24.86 11.38 55.43 0.63 -24.23 15 11 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 15 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 15 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 15 C 0.29 6.70 1.62 -26.65 -0.04 6.66 15 16 F -0.21 -4.93 16.84 2.25 0.04 -4.89 15 17 F -0.20 -4.77 16.22 2.25 0.04 -4.74 15 18 C 0.02 0.40 4.96 -3.83 -0.02 0.38 15 19 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 15 20 H 0.07 0.84 8.09 -51.93 -0.42 0.42 15 21 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 22 H 0.07 1.14 8.09 -51.93 -0.42 0.72 15 23 H 0.03 0.55 8.14 -51.93 -0.42 0.12 15 24 H 0.06 1.38 7.91 -51.93 -0.41 0.97 15 25 H 0.11 2.68 6.18 -51.93 -0.32 2.36 15 26 H 0.26 6.93 8.31 -40.82 -0.34 6.59 15 27 H 0.08 1.35 8.12 -51.93 -0.42 0.93 15 28 H 0.05 0.97 8.14 -51.93 -0.42 0.54 15 LS Contribution 237.04 15.07 3.57 3.57 Total: -1.00 -28.81 237.04 -5.75 -34.55 By element: Atomic # 1 Polarization: 0.12 SS G_CDS: -3.65 Total: -3.53 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -0.18 Total: -6.40 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: -0.55 Total: -35.05 kcal Atomic # 9 Polarization: -9.70 SS G_CDS: 0.07 Total: -9.63 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -28.81 -5.75 -34.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260005450.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.905 kcal (2) G-P(sol) polarization free energy of solvation -28.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds