Wall clock time and date at job start Mon Mar 30 2020 02:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46842 * 111.00077 * 2 1 4 4 C 1.53041 * 109.52407 * 185.84059 * 3 2 1 5 5 C 1.53124 * 109.27510 * 300.81747 * 4 3 2 6 6 H 1.09000 * 109.52368 * 297.74991 * 5 4 3 7 7 C 1.50702 * 109.52279 * 177.55890 * 5 4 3 8 8 H 1.07993 * 120.00005 * 240.31793 * 7 5 4 9 9 C 1.37874 * 119.99868 * 60.31799 * 7 5 4 10 10 N 1.31519 * 120.00242 * 0.02562 * 9 7 5 11 11 Si 1.86801 * 119.99907 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47302 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47457 * 120.00040 * 11 9 7 14 14 H 1.48508 * 109.47009 * 239.99966 * 11 9 7 15 15 C 1.53123 * 109.15980 * 57.65355 * 5 4 3 16 16 F 1.39893 * 109.50240 * 182.40313 * 15 5 4 17 17 F 1.39904 * 109.49975 * 62.28829 * 15 5 4 18 18 C 1.46846 * 110.99717 * 124.20701 * 2 1 3 19 19 H 1.08992 * 109.47191 * 295.79430 * 1 2 3 20 20 H 1.09005 * 109.46582 * 55.79078 * 1 2 3 21 21 H 1.09001 * 109.47288 * 175.78757 * 1 2 3 22 22 H 1.09006 * 109.46447 * 305.84971 * 3 2 1 23 23 H 1.08994 * 109.46873 * 65.82005 * 3 2 1 24 24 H 1.08997 * 109.50282 * 60.75542 * 4 3 2 25 25 H 1.08997 * 109.50652 * 180.83934 * 4 3 2 26 26 H 0.96999 * 120.00348 * 180.02562 * 10 9 7 27 27 H 1.08999 * 109.46089 * 54.14588 * 18 2 1 28 28 H 1.08994 * 109.45639 * 294.17306 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1188 0.5369 1.0144 6 1 3.8887 1.0354 1.9560 7 6 5.6133 0.4462 0.8432 8 1 6.0884 -0.5190 0.7484 9 6 6.3741 1.5955 0.8076 10 7 5.7957 2.7710 0.9236 11 14 8.2266 1.4831 0.5947 12 1 8.6270 0.0571 0.4885 13 1 8.6276 2.2036 -0.6403 14 1 8.8979 2.0993 1.7673 15 6 3.5181 -0.8715 1.0209 16 9 4.0209 -1.5887 2.1118 17 9 3.8560 -1.5289 -0.1669 18 6 1.9952 -0.7707 1.1338 19 1 -0.3633 0.4471 0.9252 20 1 -0.3633 0.5778 -0.8499 21 1 -0.3634 -1.0249 -0.0755 22 1 1.5635 1.9257 -0.8331 23 1 1.7325 1.8609 0.9375 24 1 3.7814 0.8566 -1.0906 25 1 3.9099 2.3512 -0.1318 26 1 6.3309 3.5795 0.8982 27 1 1.5633 -1.7715 1.1243 28 1 1.7324 -0.2707 2.0659 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260005450.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:41 Heat of formation + Delta-G solvation = -123.191670 kcal Electronic energy + Delta-G solvation = -14337.236193 eV Core-core repulsion = 11636.712092 eV Total energy + Delta-G solvation = -2700.524101 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.62575 -47.63035 -39.35911 -35.79573 -33.00273 -31.01983 -28.82349 -25.97913 -23.98381 -23.31000 -20.83836 -18.76616 -18.10160 -17.38314 -17.23990 -16.21485 -16.03169 -15.72727 -15.07692 -14.51601 -14.44782 -14.04128 -13.71964 -13.46795 -13.33143 -13.12657 -12.88806 -12.79881 -12.64029 -12.24771 -12.05841 -11.72374 -11.05223 -10.89145 -10.51183 -9.34124 -8.19824 -6.33040 1.38326 1.40250 1.52707 2.38833 2.73527 3.07719 3.13034 3.67634 3.76654 3.99733 4.27973 4.31625 4.47669 4.57222 4.65630 4.73655 4.76728 4.98299 5.03099 5.25727 5.45548 5.73220 5.77055 6.02911 6.10463 6.17691 6.69841 7.33931 8.85767 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.045360 B = 0.012470 C = 0.010733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.129489 B = 2244.806994 C = 2608.061535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.551 5.551 3 C 0.058 3.942 4 C -0.098 4.098 5 C 0.012 3.988 6 H 0.027 0.973 7 C -0.540 4.540 8 H 0.043 0.957 9 C 0.023 3.977 10 N -0.909 5.909 11 Si 0.958 3.042 12 H -0.275 1.275 13 H -0.273 1.273 14 H -0.275 1.275 15 C 0.285 3.715 16 F -0.218 7.218 17 F -0.208 7.208 18 C 0.031 3.969 19 H 0.035 0.965 20 H 0.084 0.916 21 H 0.081 0.919 22 H 0.091 0.909 23 H 0.033 0.967 24 H 0.037 0.963 25 H 0.082 0.918 26 H 0.266 0.734 27 H 0.107 0.893 28 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.227 -2.751 -0.724 9.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.276 5.276 3 C -0.069 4.069 4 C -0.136 4.136 5 C -0.008 4.008 6 H 0.045 0.955 7 C -0.578 4.578 8 H 0.061 0.939 9 C -0.177 4.177 10 N -0.547 5.547 11 Si 0.783 3.217 12 H -0.200 1.200 13 H -0.199 1.199 14 H -0.200 1.200 15 C 0.248 3.752 16 F -0.199 7.199 17 F -0.189 7.189 18 C -0.098 4.098 19 H 0.053 0.947 20 H 0.103 0.897 21 H 0.100 0.900 22 H 0.109 0.891 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.100 0.900 26 H 0.076 0.924 27 H 0.125 0.875 28 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.026 -2.819 -1.153 9.526 hybrid contribution 1.055 0.272 0.744 1.320 sum -7.971 -2.547 -0.408 8.378 Atomic orbital electron populations 1.22455 0.84331 1.03474 1.01660 1.61803 1.09895 1.14262 1.41647 1.22246 0.95569 0.88297 1.00780 1.21455 0.92768 1.02252 0.97145 1.19645 0.95706 0.88518 0.96887 0.95480 1.21211 0.92283 0.92871 1.51403 0.93886 1.25602 1.03047 0.94820 0.94186 1.69948 1.36893 0.97777 1.50104 0.85509 0.80019 0.78071 0.78128 1.20011 1.19857 1.19998 1.21549 0.94133 0.89150 0.70342 1.92873 1.89801 1.81030 1.56202 1.92876 1.94152 1.83188 1.48702 1.22847 0.90851 1.01542 0.94552 0.94686 0.89728 0.89991 0.89076 0.94891 0.94450 0.89983 0.92427 0.87492 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 9.59 127.69 1.22 1.87 15 2 N -0.55 -18.31 4.85 -922.60 -4.47 -22.78 15 3 C 0.06 2.11 5.46 86.33 0.47 2.58 15 4 C -0.10 -4.58 4.99 30.65 0.15 -4.43 15 5 C 0.01 0.59 1.81 -11.46 -0.02 0.57 15 6 H 0.03 1.48 8.14 -2.39 -0.02 1.46 15 7 C -0.54 -31.06 8.06 25.60 0.21 -30.85 15 8 H 0.04 2.57 7.70 -2.91 -0.02 2.55 15 9 C 0.02 1.30 5.31 84.65 0.45 1.75 15 10 N -0.91 -51.10 11.38 21.45 0.24 -50.86 15 11 Si 0.96 44.38 29.54 68.60 2.03 46.41 15 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 15 13 H -0.27 -12.19 7.11 99.48 0.71 -11.48 15 14 H -0.27 -12.27 7.11 99.48 0.71 -11.56 15 15 C 0.28 12.95 1.62 30.65 0.05 13.00 15 16 F -0.22 -10.24 16.84 44.97 0.76 -9.49 15 17 F -0.21 -10.10 16.22 44.97 0.73 -9.38 15 18 C 0.03 1.10 4.96 86.33 0.43 1.53 15 19 H 0.03 0.74 8.14 -2.39 -0.02 0.72 15 20 H 0.08 1.71 8.09 -2.38 -0.02 1.69 15 21 H 0.08 1.63 8.14 -2.39 -0.02 1.61 15 22 H 0.09 2.85 8.09 -2.38 -0.02 2.83 15 23 H 0.03 1.17 8.14 -2.39 -0.02 1.15 15 24 H 0.04 1.84 7.91 -2.39 -0.02 1.82 15 25 H 0.08 4.22 6.18 -2.39 -0.01 4.20 15 26 H 0.27 14.10 8.31 -92.71 -0.77 13.33 15 27 H 0.11 3.21 8.12 -2.39 -0.02 3.19 15 28 H 0.07 2.17 8.14 -2.39 -0.02 2.15 15 Total: -1.00 -61.93 237.04 3.38 -58.55 By element: Atomic # 1 Polarization: 0.39 SS G_CDS: 1.14 Total: 1.53 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: 2.96 Total: -13.98 kcal Atomic # 7 Polarization: -69.41 SS G_CDS: -4.23 Total: -73.64 kcal Atomic # 9 Polarization: -20.35 SS G_CDS: 1.49 Total: -18.86 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -61.93 3.38 -58.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260005450.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.642 kcal (2) G-P(sol) polarization free energy of solvation -61.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds