Wall clock time and date at job start Mon Mar 30 2020 02:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30894 * 1 3 3 Si 1.86795 * 119.99849 * 2 1 4 4 H 1.48504 * 109.46869 * 274.69956 * 3 2 1 5 5 H 1.48496 * 109.47506 * 34.70101 * 3 2 1 6 6 H 1.48502 * 109.47372 * 154.70411 * 3 2 1 7 7 C 1.39881 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99950 * 162.69824 * 7 2 1 9 9 C 1.41260 * 120.00169 * 342.70230 * 7 2 1 10 10 C 1.41183 * 120.97014 * 156.26372 * 9 7 2 11 11 N 1.31789 * 118.86723 * 180.02562 * 10 9 7 12 12 C 1.32783 * 121.01461 * 359.97438 * 11 10 9 13 13 N 1.37937 * 118.91141 * 179.97438 * 12 11 10 14 14 C 1.47480 * 111.00135 * 84.02915 * 13 12 11 15 15 C 1.53510 * 87.93074 * 138.69993 * 14 13 12 16 16 C 1.47477 * 110.99598 * 179.97438 * 13 12 11 17 17 N 1.32783 * 122.17510 * 0.25322 * 12 11 10 18 18 C 1.31794 * 121.00948 * 359.48077 * 17 12 11 19 19 H 0.97001 * 120.00309 * 0.02562 * 1 2 3 20 20 H 1.07999 * 120.56772 * 359.97438 * 10 9 7 21 21 H 1.09001 * 113.47220 * 253.47142 * 14 13 12 22 22 H 1.08998 * 113.47440 * 23.92894 * 14 13 12 23 23 H 1.09000 * 114.16727 * 220.32611 * 15 14 13 24 24 H 1.08998 * 114.34141 * 87.63809 * 15 14 13 25 25 H 1.09003 * 113.48256 * 336.06099 * 16 13 12 26 26 H 1.08999 * 113.47900 * 106.47308 * 16 13 12 27 27 H 1.07992 * 120.56597 * 180.27259 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3910 2.1037 -1.3954 5 1 1.4936 2.6219 0.7970 6 1 3.5866 1.4136 0.5982 7 6 2.0083 -1.2114 0.0005 8 1 3.0517 -1.2327 -0.2776 9 6 1.3500 -2.4069 0.3648 10 6 1.8239 -3.6611 -0.0775 11 7 1.1774 -4.7502 0.2868 12 6 0.0980 -4.6797 1.0570 13 7 -0.5455 -5.8470 1.4118 14 6 0.0933 -6.4661 2.5881 15 6 -1.3132 -6.7775 3.1185 16 6 -1.7154 -5.5672 2.2649 17 7 -0.3855 -3.5222 1.4924 18 6 0.1991 -2.3824 1.1824 19 1 -0.4851 0.8400 -0.0004 20 1 2.7008 -3.7269 -0.7045 21 1 0.6741 -7.3568 2.3483 22 1 0.6437 -5.7573 3.2067 23 1 -1.4293 -6.6251 4.1915 24 1 -1.7246 -7.7253 2.7714 25 1 -1.6477 -4.6185 2.7975 26 1 -2.6681 -5.6948 1.7510 27 1 -0.1977 -1.4455 1.5441 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260011066.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:09 Heat of formation + Delta-G solvation = 67.649042 kcal Electronic energy + Delta-G solvation = -12829.858971 eV Core-core repulsion = 10588.299531 eV Total energy + Delta-G solvation = -2241.559440 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.89864 -39.80543 -36.11873 -34.04144 -32.67061 -29.93460 -26.95708 -26.63748 -24.60388 -23.33738 -20.80814 -19.51230 -18.66168 -18.01333 -16.95160 -16.60693 -15.53542 -15.37936 -15.14038 -14.32181 -13.97036 -13.85410 -13.23332 -13.10184 -13.00390 -12.63131 -12.23625 -12.15558 -11.59398 -11.45838 -11.31987 -11.23954 -10.63771 -9.60346 -9.52542 -8.87216 -6.53553 0.53213 0.75942 1.40043 1.48465 1.57593 2.14561 2.57285 2.89570 3.41698 3.56816 3.83471 4.04293 4.23262 4.38555 4.51368 4.66773 4.75502 4.87794 4.91043 4.96733 5.04548 5.17116 5.30244 5.53009 5.64512 6.13208 6.23438 6.37902 6.57371 6.92702 7.77044 8.09972 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.072840 B = 0.008299 C = 0.007787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.312437 B = 3372.958259 C = 3594.832166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.034 3.966 3 Si 0.998 3.002 4 H -0.260 1.260 5 H -0.264 1.264 6 H -0.252 1.252 7 C -0.450 4.450 8 H 0.100 0.900 9 C -0.016 4.016 10 C 0.011 3.989 11 N -0.501 5.501 12 C 0.273 3.727 13 N -0.425 5.425 14 C 0.014 3.986 15 C -0.117 4.117 16 C 0.009 3.991 17 N -0.527 5.527 18 C 0.065 3.935 19 H 0.300 0.700 20 H 0.161 0.839 21 H 0.091 0.909 22 H 0.046 0.954 23 H 0.100 0.900 24 H 0.112 0.888 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.163 -1.621 4.734 5.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.184 4.184 3 Si 0.817 3.183 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.176 1.176 7 C -0.479 4.479 8 H 0.118 0.882 9 C -0.023 4.023 10 C -0.160 4.160 11 N -0.215 5.215 12 C -0.078 4.078 13 N -0.148 5.148 14 C -0.115 4.115 15 C -0.154 4.154 16 C -0.120 4.120 17 N -0.243 5.243 18 C -0.108 4.108 19 H 0.111 0.889 20 H 0.178 0.822 21 H 0.110 0.890 22 H 0.065 0.935 23 H 0.119 0.881 24 H 0.130 0.870 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.601 -2.750 4.324 5.159 hybrid contribution 0.757 2.108 -0.038 2.241 sum 0.156 -0.642 4.285 4.336 Atomic orbital electron populations 1.69802 1.09502 1.32059 1.32290 1.27040 0.95529 1.05316 0.90469 0.84937 0.79129 0.74550 0.79686 1.18434 1.18869 1.17571 1.19871 0.98846 0.90990 1.38215 0.88210 1.19521 0.94677 0.95515 0.92569 1.23173 1.02201 0.87433 1.03195 1.67322 1.08250 1.34318 1.11621 1.21095 0.94461 0.89790 1.02463 1.65981 1.06180 1.15372 1.27245 1.23676 0.98502 0.99205 0.90084 1.23102 0.93333 0.98454 1.00540 1.23671 0.94219 0.99616 0.94496 1.67698 1.33098 0.99549 1.24002 1.23230 0.95816 0.94384 0.97347 0.88917 0.82230 0.89039 0.93522 0.88139 0.86966 0.90504 0.90030 0.82935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.32 10.94 21.82 0.24 -39.08 15 2 C 0.03 1.57 5.19 85.23 0.44 2.01 15 3 Si 1.00 33.89 29.59 68.60 2.03 35.92 15 4 H -0.26 -8.52 7.11 99.48 0.71 -7.81 15 5 H -0.26 -8.60 7.11 99.48 0.71 -7.89 15 6 H -0.25 -8.33 7.11 99.48 0.71 -7.62 15 7 C -0.45 -22.16 9.09 23.41 0.21 -21.95 15 8 H 0.10 4.53 7.90 -2.91 -0.02 4.51 15 9 C -0.02 -0.85 5.60 -21.09 -0.12 -0.96 15 10 C 0.01 0.55 11.11 85.42 0.95 1.50 15 11 N -0.50 -26.50 10.44 -196.18 -2.05 -28.55 15 12 C 0.27 14.06 6.76 261.46 1.77 15.82 15 13 N -0.43 -18.52 6.50 -739.54 -4.81 -23.32 15 14 C 0.01 0.48 7.66 83.53 0.64 1.12 15 15 C -0.12 -3.10 8.47 30.92 0.26 -2.84 15 16 C 0.01 0.33 7.34 83.52 0.61 0.94 15 17 N -0.53 -27.85 8.13 -196.17 -1.59 -29.44 15 18 C 0.07 3.52 9.99 85.42 0.85 4.37 15 19 H 0.30 12.89 8.30 -92.71 -0.77 12.12 15 20 H 0.16 7.24 8.06 -2.91 -0.02 7.21 15 21 H 0.09 2.93 8.14 -2.39 -0.02 2.91 15 22 H 0.05 1.76 7.89 -2.39 -0.02 1.75 15 23 H 0.10 2.15 8.14 -2.39 -0.02 2.13 15 24 H 0.11 2.49 8.14 -2.39 -0.02 2.47 15 25 H 0.08 3.08 6.60 -2.39 -0.02 3.06 15 26 H 0.08 2.77 8.14 -2.39 -0.02 2.75 15 27 H 0.15 8.26 6.21 -2.91 -0.02 8.25 15 Total: -1.00 -61.26 235.65 0.61 -60.65 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 1.17 Total: 23.82 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 5.62 Total: 0.01 kcal Atomic # 7 Polarization: -112.18 SS G_CDS: -8.21 Total: -120.39 kcal Atomic # 14 Polarization: 33.89 SS G_CDS: 2.03 Total: 35.92 kcal Total: -61.26 0.61 -60.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260011066.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.295 kcal (2) G-P(sol) polarization free energy of solvation -61.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds