Wall clock time and date at job start Mon Mar 30 2020 02:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38226 * 119.61805 * 2 1 4 4 C 1.38632 * 119.15707 * 180.22688 * 3 2 1 5 5 C 1.38668 * 118.42489 * 359.52859 * 4 3 2 6 6 C 1.50698 * 120.41977 * 180.27058 * 5 4 3 7 7 C 1.38179 * 119.16099 * 0.25000 * 5 4 3 8 8 C 1.50701 * 119.61829 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.47021 * 6.19287 * 8 7 5 10 10 C 1.53004 * 109.47296 * 126.19748 * 8 7 5 11 11 C 1.50703 * 109.46941 * 246.19601 * 8 7 5 12 12 H 1.07996 * 120.00129 * 359.97438 * 11 8 7 13 13 C 1.37879 * 120.00194 * 179.97438 * 11 8 7 14 14 N 1.31515 * 119.99668 * 0.02562 * 13 11 8 15 15 Si 1.86797 * 120.00039 * 179.97438 * 13 11 8 16 16 H 1.48504 * 109.47073 * 90.00312 * 15 13 11 17 17 H 1.48505 * 109.46882 * 209.99808 * 15 13 11 18 18 H 1.48494 * 109.47252 * 330.00095 * 15 13 11 19 19 N 1.31853 * 119.61937 * 179.74608 * 2 1 3 20 20 H 1.09005 * 109.46538 * 270.25204 * 1 2 3 21 21 H 1.08996 * 109.47164 * 30.24924 * 1 2 3 22 22 H 1.08991 * 109.47216 * 150.25276 * 1 2 3 23 23 H 1.07998 * 120.42260 * 0.02562 * 3 2 1 24 24 H 1.08010 * 120.78501 * 179.79469 * 4 3 2 25 25 H 1.08997 * 109.47481 * 95.72865 * 6 5 4 26 26 H 1.09002 * 109.47227 * 215.73060 * 6 5 4 27 27 H 1.08996 * 109.47398 * 335.72782 * 6 5 4 28 28 H 1.09002 * 109.46873 * 299.99306 * 10 8 7 29 29 H 1.08999 * 109.46971 * 60.00006 * 10 8 7 30 30 H 1.09003 * 109.46440 * 180.02562 * 10 8 7 31 31 H 0.97000 * 119.99963 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5764 1.1905 -0.0048 5 6 4.2267 -0.0342 0.0006 6 6 5.7323 -0.0988 0.0019 7 6 3.4767 -1.1948 0.0052 8 6 4.1727 -2.5314 0.0117 9 1 5.2466 -2.3813 0.1227 10 6 3.6518 -3.3720 1.1792 11 6 3.8970 -3.2476 -1.2853 12 1 3.2792 -2.7817 -2.0387 13 6 4.4335 -4.4977 -1.5101 14 7 5.1854 -5.0652 -0.5925 15 14 4.0911 -5.3856 -3.1175 16 1 5.1364 -5.0314 -4.1111 17 1 4.1055 -6.8524 -2.8855 18 1 2.7594 -4.9791 -3.6337 19 7 2.1587 -1.1462 0.0051 20 1 -0.3632 0.0045 1.0277 21 1 -0.3633 0.8877 -0.5177 22 1 -0.3633 -0.8922 -0.5099 23 1 1.6508 2.1373 0.0004 24 1 4.1367 2.1139 -0.0082 25 1 6.0903 -0.2127 1.0250 26 1 6.0600 -0.9502 -0.5946 27 1 6.1357 0.8198 -0.4240 28 1 3.8514 -2.8541 2.1173 29 1 2.5780 -3.5222 1.0681 30 1 4.1557 -4.3386 1.1840 31 1 5.5631 -5.9445 -0.7507 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260081872.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:16 Heat of formation + Delta-G solvation = 14.195101 kcal Electronic energy + Delta-G solvation = -13186.855431 eV Core-core repulsion = 11046.518397 eV Total energy + Delta-G solvation = -2140.337033 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.72003 -34.74587 -33.26528 -31.77658 -29.51534 -28.89653 -25.09967 -24.77278 -23.15231 -20.85913 -19.69876 -16.45826 -15.61765 -15.22720 -14.64675 -13.99719 -13.85343 -12.96200 -12.86973 -12.61400 -12.29872 -11.96646 -11.77204 -11.55934 -11.31420 -11.12160 -10.84602 -10.67285 -10.30886 -10.00821 -9.66005 -9.11611 -8.84718 -8.42939 -8.31314 -7.78711 -5.96345 -4.00897 1.82503 2.00416 3.33507 3.39874 3.45592 4.41361 4.56885 4.97387 5.21096 5.34809 5.50533 5.51051 5.71446 5.86519 5.92528 5.96947 6.12946 6.19526 6.33970 6.59280 6.67168 6.70376 6.91389 6.95791 7.18873 7.30098 7.54349 7.72532 7.95970 8.13683 8.42124 8.97106 8.99163 9.61678 11.09580 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.033585 B = 0.010687 C = 0.009542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.502319 B = 2619.416197 C = 2933.608349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.112 3.888 3 C -0.203 4.203 4 C -0.081 4.081 5 C -0.156 4.156 6 C -0.106 4.106 7 C 0.184 3.816 8 C 0.079 3.921 9 H 0.049 0.951 10 C -0.127 4.127 11 C -0.493 4.493 12 H 0.054 0.946 13 C 0.061 3.939 14 N -0.892 5.892 15 Si 0.894 3.106 16 H -0.282 1.282 17 H -0.286 1.286 18 H -0.274 1.274 19 N -0.470 5.470 20 H 0.069 0.931 21 H 0.065 0.935 22 H 0.074 0.926 23 H 0.120 0.880 24 H 0.121 0.879 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.054 0.946 28 H 0.002 0.998 29 H 0.038 0.962 30 H 0.085 0.915 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.079 9.946 1.673 10.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.027 4.027 3 C -0.223 4.223 4 C -0.107 4.107 5 C -0.158 4.158 6 C -0.163 4.163 7 C 0.046 3.954 8 C 0.060 3.940 9 H 0.067 0.933 10 C -0.185 4.185 11 C -0.532 4.532 12 H 0.073 0.927 13 C -0.140 4.140 14 N -0.531 5.531 15 Si 0.722 3.278 16 H -0.208 1.208 17 H -0.212 1.212 18 H -0.199 1.199 19 N -0.178 5.178 20 H 0.088 0.912 21 H 0.084 0.916 22 H 0.093 0.907 23 H 0.138 0.862 24 H 0.139 0.861 25 H 0.083 0.917 26 H 0.103 0.897 27 H 0.073 0.927 28 H 0.021 0.979 29 H 0.057 0.943 30 H 0.103 0.897 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.468 9.002 1.708 9.797 hybrid contribution 0.258 0.422 -0.886 1.014 sum -3.210 9.424 0.822 9.990 Atomic orbital electron populations 1.20615 0.89951 1.02708 1.02228 1.21276 0.96631 0.88867 0.95886 1.21661 0.94771 0.98573 1.07267 1.21312 0.94252 0.97286 0.97862 1.20811 0.97602 0.93661 1.03698 1.20719 0.90725 1.02630 1.02218 1.22110 0.88460 0.96772 0.88069 1.18008 0.94560 0.85424 0.96027 0.93322 1.21689 1.00382 1.02202 0.94238 1.20940 1.30507 1.01586 1.00170 0.92726 1.24914 0.95141 0.97173 0.96758 1.69881 1.33777 1.16141 1.33350 0.86558 0.78698 0.78783 0.83787 1.20773 1.21202 1.19933 1.67475 1.10244 1.27884 1.12242 0.91206 0.91618 0.90726 0.86224 0.86068 0.91734 0.89722 0.92724 0.97876 0.94325 0.89669 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.42 10.17 36.01 0.37 -1.05 16 2 C 0.11 2.10 6.78 -82.59 -0.56 1.54 16 3 C -0.20 -3.36 9.75 -39.44 -0.38 -3.74 16 4 C -0.08 -1.38 9.84 -39.28 -0.39 -1.77 16 5 C -0.16 -3.09 5.90 -104.49 -0.62 -3.71 16 6 C -0.11 -1.83 9.15 36.00 0.33 -1.50 16 7 C 0.18 4.27 5.41 -82.59 -0.45 3.83 16 8 C 0.08 2.03 2.28 -92.92 -0.21 1.82 16 9 H 0.05 1.27 5.72 -51.93 -0.30 0.98 16 10 C -0.13 -3.24 8.82 37.16 0.33 -2.91 16 11 C -0.49 -13.92 8.51 -34.44 -0.29 -14.22 16 12 H 0.05 1.59 7.74 -52.49 -0.41 1.18 16 13 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 14 N -0.89 -25.44 11.32 55.43 0.63 -24.81 16 15 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 19 N -0.47 -10.75 9.71 -5.74 -0.06 -10.80 16 20 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 21 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 22 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 23 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 24 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.08 1.63 6.57 -51.93 -0.34 1.29 16 27 H 0.05 0.78 8.06 -51.93 -0.42 0.36 16 28 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 29 H 0.04 0.99 7.93 -51.93 -0.41 0.58 16 30 H 0.08 2.32 6.07 -51.93 -0.32 2.00 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 260.94 15.07 3.93 3.93 Total: -1.00 -30.14 260.94 -6.77 -36.91 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -4.28 Total: -1.86 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -1.97 Total: -20.11 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.57 Total: -35.61 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.14 -6.77 -36.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260081872.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.104 kcal (2) G-P(sol) polarization free energy of solvation -30.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds