Wall clock time and date at job start Mon Mar 30 2020 02:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38226 * 119.61805 * 2 1 4 4 C 1.38632 * 119.15707 * 180.22688 * 3 2 1 5 5 C 1.38668 * 118.42489 * 359.52859 * 4 3 2 6 6 C 1.50698 * 120.41977 * 180.27058 * 5 4 3 7 7 C 1.38179 * 119.16099 * 0.25000 * 5 4 3 8 8 C 1.50701 * 119.61829 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.47021 * 6.19287 * 8 7 5 10 10 C 1.53004 * 109.47296 * 126.19748 * 8 7 5 11 11 C 1.50703 * 109.46941 * 246.19601 * 8 7 5 12 12 H 1.07996 * 120.00129 * 359.97438 * 11 8 7 13 13 C 1.37879 * 120.00194 * 179.97438 * 11 8 7 14 14 N 1.31515 * 119.99668 * 0.02562 * 13 11 8 15 15 Si 1.86797 * 120.00039 * 179.97438 * 13 11 8 16 16 H 1.48504 * 109.47073 * 90.00312 * 15 13 11 17 17 H 1.48505 * 109.46882 * 209.99808 * 15 13 11 18 18 H 1.48494 * 109.47252 * 330.00095 * 15 13 11 19 19 N 1.31853 * 119.61937 * 179.74608 * 2 1 3 20 20 H 1.09005 * 109.46538 * 270.25204 * 1 2 3 21 21 H 1.08996 * 109.47164 * 30.24924 * 1 2 3 22 22 H 1.08991 * 109.47216 * 150.25276 * 1 2 3 23 23 H 1.07998 * 120.42260 * 0.02562 * 3 2 1 24 24 H 1.08010 * 120.78501 * 179.79469 * 4 3 2 25 25 H 1.08997 * 109.47481 * 95.72865 * 6 5 4 26 26 H 1.09002 * 109.47227 * 215.73060 * 6 5 4 27 27 H 1.08996 * 109.47398 * 335.72782 * 6 5 4 28 28 H 1.09002 * 109.46873 * 299.99306 * 10 8 7 29 29 H 1.08999 * 109.46971 * 60.00006 * 10 8 7 30 30 H 1.09003 * 109.46440 * 180.02562 * 10 8 7 31 31 H 0.97000 * 119.99963 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5764 1.1905 -0.0048 5 6 4.2267 -0.0342 0.0006 6 6 5.7323 -0.0988 0.0019 7 6 3.4767 -1.1948 0.0052 8 6 4.1727 -2.5314 0.0117 9 1 5.2466 -2.3813 0.1227 10 6 3.6518 -3.3720 1.1792 11 6 3.8970 -3.2476 -1.2853 12 1 3.2792 -2.7817 -2.0387 13 6 4.4335 -4.4977 -1.5101 14 7 5.1854 -5.0652 -0.5925 15 14 4.0911 -5.3856 -3.1175 16 1 5.1364 -5.0314 -4.1111 17 1 4.1055 -6.8524 -2.8855 18 1 2.7594 -4.9791 -3.6337 19 7 2.1587 -1.1462 0.0051 20 1 -0.3632 0.0045 1.0277 21 1 -0.3633 0.8877 -0.5177 22 1 -0.3633 -0.8922 -0.5099 23 1 1.6508 2.1373 0.0004 24 1 4.1367 2.1139 -0.0082 25 1 6.0903 -0.2127 1.0250 26 1 6.0600 -0.9502 -0.5946 27 1 6.1357 0.8198 -0.4240 28 1 3.8514 -2.8541 2.1173 29 1 2.5780 -3.5222 1.0681 30 1 4.1557 -4.3386 1.1840 31 1 5.5631 -5.9445 -0.7507 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260081872.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:16 Heat of formation + Delta-G solvation = -3.544601 kcal Electronic energy + Delta-G solvation = -13187.624682 eV Core-core repulsion = 11046.518397 eV Total energy + Delta-G solvation = -2141.106285 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.19775 -36.56261 -34.80067 -33.55740 -31.23001 -30.25916 -27.23655 -26.23454 -24.72947 -22.35556 -21.43193 -18.45733 -17.17663 -16.97965 -16.27072 -15.48031 -15.40249 -14.64123 -14.50325 -14.10796 -13.66519 -13.42776 -13.28172 -13.05059 -12.96268 -12.86047 -12.65857 -12.44667 -12.25358 -12.06530 -11.50937 -11.04948 -10.45094 -10.41541 -9.96251 -9.28839 -8.09837 -6.21734 0.38325 0.59566 1.38488 1.39982 1.50707 2.42367 3.02925 3.17266 3.60917 3.99425 4.09065 4.25006 4.30515 4.61985 4.78064 4.79016 4.81693 4.85220 4.91706 4.98361 5.12258 5.16733 5.25618 5.34905 5.38281 5.55665 5.58442 5.87481 5.95685 6.14806 6.33763 6.81683 7.42108 7.47831 8.94727 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.033585 B = 0.010687 C = 0.009542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.502319 B = 2619.416197 C = 2933.608349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.090 3.910 3 C -0.188 4.188 4 C -0.075 4.075 5 C -0.171 4.171 6 C -0.101 4.101 7 C 0.143 3.857 8 C 0.078 3.922 9 H 0.036 0.964 10 C -0.113 4.113 11 C -0.510 4.510 12 H 0.035 0.965 13 C 0.016 3.984 14 N -0.914 5.914 15 Si 0.953 3.047 16 H -0.272 1.272 17 H -0.278 1.278 18 H -0.278 1.278 19 N -0.512 5.512 20 H 0.085 0.915 21 H 0.100 0.900 22 H 0.057 0.943 23 H 0.166 0.834 24 H 0.165 0.835 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.089 0.911 28 H 0.017 0.983 29 H 0.023 0.977 30 H 0.063 0.937 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.653 12.348 1.302 12.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.048 4.048 3 C -0.207 4.207 4 C -0.100 4.100 5 C -0.173 4.173 6 C -0.158 4.158 7 C 0.006 3.994 8 C 0.059 3.941 9 H 0.054 0.946 10 C -0.171 4.171 11 C -0.549 4.549 12 H 0.053 0.947 13 C -0.182 4.182 14 N -0.554 5.554 15 Si 0.779 3.221 16 H -0.197 1.197 17 H -0.203 1.203 18 H -0.203 1.203 19 N -0.222 5.222 20 H 0.103 0.897 21 H 0.119 0.881 22 H 0.076 0.924 23 H 0.184 0.816 24 H 0.183 0.817 25 H 0.091 0.909 26 H 0.072 0.928 27 H 0.108 0.892 28 H 0.036 0.964 29 H 0.043 0.957 30 H 0.081 0.919 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.033 11.404 1.340 12.170 hybrid contribution 0.377 -0.225 -0.740 0.860 sum -3.656 11.179 0.601 11.777 Atomic orbital electron populations 1.20708 0.87288 1.03614 1.03491 1.22009 0.98558 0.88744 0.95521 1.22173 0.94907 0.99457 1.04169 1.21793 0.94838 0.97555 0.95849 1.21054 0.98587 0.93880 1.03761 1.20688 0.89614 1.03027 1.02446 1.21737 0.89263 0.96549 0.91817 1.17823 0.94205 0.87329 0.94734 0.94624 1.21496 0.98963 1.01347 0.95319 1.21102 1.30392 1.02288 1.01071 0.94656 1.25629 0.94951 0.97783 0.99845 1.69981 1.34228 1.16421 1.34752 0.85633 0.78392 0.77858 0.80231 1.19702 1.20338 1.20307 1.67329 1.10453 1.30698 1.13717 0.89691 0.88106 0.92377 0.81630 0.81743 0.90925 0.92812 0.89233 0.96435 0.95732 0.91856 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.50 10.17 71.24 0.72 -1.77 16 2 C 0.09 3.22 6.78 42.55 0.29 3.50 16 3 C -0.19 -5.45 9.75 22.36 0.22 -5.23 16 4 C -0.07 -2.26 9.84 22.47 0.22 -2.04 16 5 C -0.17 -6.59 5.90 -19.78 -0.12 -6.71 16 6 C -0.10 -3.39 9.15 71.24 0.65 -2.73 16 7 C 0.14 6.78 5.41 42.54 0.23 7.01 16 8 C 0.08 4.18 2.28 -12.28 -0.03 4.16 16 9 H 0.04 1.97 5.72 -2.39 -0.01 1.95 16 10 C -0.11 -6.02 8.82 71.98 0.63 -5.39 16 11 C -0.51 -29.88 8.51 25.60 0.22 -29.66 16 12 H 0.04 2.14 7.74 -2.91 -0.02 2.12 16 13 C 0.02 0.94 5.30 84.65 0.45 1.39 16 14 N -0.91 -53.49 11.32 21.45 0.24 -53.24 16 15 Si 0.95 45.42 29.54 68.60 2.03 47.45 16 16 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 17 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 18 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 19 N -0.51 -23.65 9.71 -172.08 -1.67 -25.32 16 20 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 21 H 0.10 1.94 8.08 -2.39 -0.02 1.92 16 22 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.17 3.26 8.06 -2.91 -0.02 3.24 16 24 H 0.17 3.50 8.06 -2.91 -0.02 3.47 16 25 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.05 2.12 6.57 -2.39 -0.02 2.11 16 27 H 0.09 2.31 8.06 -2.39 -0.02 2.29 16 28 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.02 1.30 7.93 -2.39 -0.02 1.28 16 30 H 0.06 3.59 6.07 -2.39 -0.01 3.58 16 31 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -67.73 260.94 5.19 -62.53 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: 1.10 Total: 6.07 kcal Atomic # 6 Polarization: -40.98 SS G_CDS: 3.49 Total: -37.49 kcal Atomic # 7 Polarization: -77.14 SS G_CDS: -1.43 Total: -78.57 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -67.73 5.19 -62.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260081872.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.989 kcal (2) G-P(sol) polarization free energy of solvation -67.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds