Wall clock time and date at job start Mon Mar 30 2020 02:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38126 * 120.03682 * 2 1 4 4 C 1.38265 * 120.07441 * 179.97438 * 3 2 1 5 5 C 1.38304 * 120.15230 * 359.97438 * 4 3 2 6 6 C 1.50693 * 119.96351 * 180.02562 * 5 4 3 7 7 H 1.09005 * 109.47123 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47403 * 299.97472 * 6 5 4 9 9 C 1.50706 * 109.47084 * 59.97866 * 6 5 4 10 10 H 1.07997 * 119.99735 * 359.97438 * 9 6 5 11 11 C 1.37877 * 120.00010 * 179.97438 * 9 6 5 12 12 N 1.31515 * 120.00352 * 180.02562 * 11 9 6 13 13 Si 1.86804 * 119.99983 * 359.97438 * 11 9 6 14 14 H 1.48502 * 109.46867 * 89.99805 * 13 11 9 15 15 H 1.48499 * 109.47097 * 209.99873 * 13 11 9 16 16 H 1.48498 * 109.47204 * 330.00105 * 13 11 9 17 17 C 1.38088 * 120.07187 * 359.97438 * 5 4 3 18 18 C 1.38893 * 120.04007 * 180.23421 * 2 1 3 19 19 N 1.39669 * 120.07092 * 359.97438 * 18 2 1 20 20 H 1.08999 * 109.47281 * 89.99554 * 1 2 3 21 21 H 1.08996 * 109.47255 * 209.99485 * 1 2 3 22 22 H 1.09000 * 109.47458 * 329.99651 * 1 2 3 23 23 H 1.08007 * 119.96316 * 359.97438 * 3 2 1 24 24 H 1.07999 * 119.92127 * 180.02562 * 4 3 2 25 25 H 1.08997 * 109.46963 * 179.97438 * 8 6 5 26 26 H 1.08991 * 109.47106 * 300.00169 * 8 6 5 27 27 H 1.09005 * 109.46671 * 60.00097 * 8 6 5 28 28 H 0.96991 * 120.00173 * 180.02562 * 12 11 9 29 29 H 1.08002 * 120.03354 * 179.97438 * 17 5 4 30 30 H 0.97008 * 120.00077 * 180.27407 * 19 18 2 31 31 H 0.96995 * 120.00716 * 0.28065 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5810 1.1967 0.0005 5 6 4.2765 0.0012 0.0016 6 6 5.7834 0.0072 0.0028 7 1 6.1508 -1.0191 0.0040 8 6 6.2916 0.7293 -1.2467 9 6 6.2820 0.7206 1.2331 10 1 5.5780 1.1292 1.9428 11 6 7.6369 0.8516 1.4525 12 7 8.0720 1.4738 2.5264 13 14 8.8545 0.1443 0.2251 14 1 9.1736 1.1684 -0.8019 15 1 10.0985 -0.2507 0.9335 16 1 8.2595 -1.0471 -0.4320 17 6 3.5915 -1.1978 0.0027 18 6 2.2023 -1.2024 -0.0049 19 7 1.5063 -2.4133 -0.0093 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5137 22 1 -0.3634 0.8899 0.5139 23 1 1.6583 2.1311 -0.0004 24 1 4.1191 2.1331 0.0010 25 1 7.3816 0.7340 -1.2455 26 1 5.9310 0.2133 -2.1364 27 1 5.9242 1.7556 -1.2478 28 1 9.0251 1.5663 2.6805 29 1 4.1352 -2.1310 0.0031 30 1 1.9929 -3.2524 -0.0087 31 1 0.5363 -2.4153 -0.0131 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260180735.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:21 Heat of formation + Delta-G solvation = 13.694830 kcal Electronic energy + Delta-G solvation = -13002.588192 eV Core-core repulsion = 10862.229465 eV Total energy + Delta-G solvation = -2140.358727 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.08785 -35.41659 -33.32498 -32.01643 -30.40417 -28.34777 -25.90373 -24.92549 -21.82538 -21.66277 -19.30771 -16.84005 -16.28535 -15.91154 -14.82430 -14.55317 -13.82626 -13.57973 -13.23932 -12.75924 -12.61415 -12.20178 -12.05224 -11.88357 -11.38485 -11.04317 -10.88742 -10.57315 -10.13969 -9.85872 -9.83423 -9.30305 -9.05056 -8.53195 -7.82088 -6.90931 -6.03498 -4.02460 2.12887 2.33255 3.29778 3.39934 3.42507 4.24264 4.43696 4.56396 5.28744 5.33996 5.38862 5.65404 5.81251 5.89438 5.99465 6.20648 6.28754 6.38287 6.44164 6.51390 6.71723 6.85575 6.93904 7.02410 7.21541 7.31536 7.54045 7.72777 7.83015 8.00822 8.10130 8.56960 9.02209 9.57866 11.09492 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.051386 B = 0.008721 C = 0.008352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.761148 B = 3210.020923 C = 3351.525557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.193 4.193 3 C -0.080 4.080 4 C -0.157 4.157 5 C 0.014 3.986 6 C 0.036 3.964 7 H 0.033 0.967 8 C -0.142 4.142 9 C -0.504 4.504 10 H 0.077 0.923 11 C 0.069 3.931 12 N -0.901 5.901 13 Si 0.888 3.112 14 H -0.279 1.279 15 H -0.298 1.298 16 H -0.267 1.267 17 C -0.201 4.201 18 C 0.208 3.792 19 N -0.886 5.886 20 H 0.055 0.945 21 H 0.051 0.949 22 H 0.059 0.941 23 H 0.111 0.889 24 H 0.120 0.880 25 H 0.039 0.961 26 H 0.030 0.970 27 H 0.055 0.945 28 H 0.263 0.737 29 H 0.112 0.888 30 H 0.393 0.607 31 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.627 -4.814 -6.725 14.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.197 4.197 3 C -0.099 4.099 4 C -0.177 4.177 5 C 0.014 3.986 6 C 0.017 3.983 7 H 0.051 0.949 8 C -0.200 4.200 9 C -0.542 4.542 10 H 0.095 0.905 11 C -0.132 4.132 12 N -0.539 5.539 13 Si 0.719 3.281 14 H -0.206 1.206 15 H -0.226 1.226 16 H -0.192 1.192 17 C -0.223 4.223 18 C 0.105 3.895 19 N -0.427 5.427 20 H 0.074 0.926 21 H 0.070 0.930 22 H 0.078 0.922 23 H 0.129 0.871 24 H 0.138 0.862 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.130 0.870 30 H 0.220 0.780 31 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -11.444 -4.702 -6.617 14.031 hybrid contribution 0.655 -0.638 -0.491 1.038 sum -10.789 -5.340 -7.108 13.980 Atomic orbital electron populations 1.20466 0.92418 1.01464 1.00848 1.19117 0.94844 0.92076 1.13685 1.20714 0.94276 0.96109 0.98777 1.20843 0.93021 0.98499 1.05292 1.19924 0.96657 0.91615 0.90435 1.18358 0.87840 0.97129 0.94925 0.94915 1.22140 0.99475 1.00929 0.97407 1.20975 0.92472 1.35639 1.05136 0.90493 1.25004 0.98260 0.94717 0.95247 1.69892 1.14522 1.42731 1.26780 0.86840 0.80370 0.80011 0.80889 1.20630 1.22604 1.19202 1.20501 0.91387 0.98401 1.12035 1.17511 0.91159 0.85678 0.95136 1.42432 1.08376 1.05147 1.86768 0.92641 0.93007 0.92176 0.87130 0.86163 0.94207 0.95137 0.92625 0.92681 0.87001 0.78012 0.78075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.16 9.57 36.00 0.34 -0.82 16 2 C -0.19 -3.15 5.90 -104.42 -0.62 -3.76 16 3 C -0.08 -1.41 9.70 -39.61 -0.38 -1.79 16 4 C -0.16 -3.20 8.70 -39.55 -0.34 -3.55 16 5 C 0.01 0.31 4.73 -104.66 -0.50 -0.18 16 6 C 0.04 0.88 2.07 -92.93 -0.19 0.68 16 7 H 0.03 0.80 6.93 -51.93 -0.36 0.44 16 8 C -0.14 -3.16 8.49 37.16 0.32 -2.84 16 9 C -0.50 -14.31 8.82 -34.44 -0.30 -14.62 16 10 H 0.08 2.39 7.84 -52.49 -0.41 1.98 16 11 C 0.07 2.00 5.45 -17.82 -0.10 1.91 16 12 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 13 Si 0.89 22.17 24.38 -169.99 -4.14 18.02 16 14 H -0.28 -6.78 6.87 56.52 0.39 -6.39 16 15 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 16 H -0.27 -6.38 6.53 56.52 0.37 -6.01 16 17 C -0.20 -3.89 9.52 -39.38 -0.37 -4.26 16 18 C 0.21 3.49 6.73 -83.79 -0.56 2.92 16 19 N -0.89 -11.14 8.99 32.41 0.29 -10.85 16 20 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 21 H 0.05 0.56 6.56 -51.93 -0.34 0.22 16 22 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 23 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 24 H 0.12 2.51 7.57 -52.49 -0.40 2.11 16 25 H 0.04 0.91 3.27 -51.93 -0.17 0.74 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 1.19 7.39 -51.93 -0.38 0.81 16 28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.11 2.04 7.94 -52.49 -0.42 1.62 16 30 H 0.39 4.29 8.84 -40.82 -0.36 3.93 16 31 H 0.39 4.03 6.83 -40.82 -0.28 3.75 16 LS Contribution 251.42 15.07 3.79 3.79 Total: -1.00 -31.08 251.42 -5.99 -37.07 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -3.99 Total: 5.28 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: -2.71 Total: -26.31 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 1.06 Total: -37.86 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.14 Total: 18.02 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -31.08 -5.99 -37.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260180735.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.767 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds