Wall clock time and date at job start Mon Mar 30 2020 02:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38126 * 120.03682 * 2 1 4 4 C 1.38265 * 120.07441 * 179.97438 * 3 2 1 5 5 C 1.38304 * 120.15230 * 359.97438 * 4 3 2 6 6 C 1.50693 * 119.96351 * 180.02562 * 5 4 3 7 7 H 1.09005 * 109.47123 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47403 * 299.97472 * 6 5 4 9 9 C 1.50706 * 109.47084 * 59.97866 * 6 5 4 10 10 H 1.07997 * 119.99735 * 359.97438 * 9 6 5 11 11 C 1.37877 * 120.00010 * 179.97438 * 9 6 5 12 12 N 1.31515 * 120.00352 * 180.02562 * 11 9 6 13 13 Si 1.86804 * 119.99983 * 359.97438 * 11 9 6 14 14 H 1.48502 * 109.46867 * 89.99805 * 13 11 9 15 15 H 1.48499 * 109.47097 * 209.99873 * 13 11 9 16 16 H 1.48498 * 109.47204 * 330.00105 * 13 11 9 17 17 C 1.38088 * 120.07187 * 359.97438 * 5 4 3 18 18 C 1.38893 * 120.04007 * 180.23421 * 2 1 3 19 19 N 1.39669 * 120.07092 * 359.97438 * 18 2 1 20 20 H 1.08999 * 109.47281 * 89.99554 * 1 2 3 21 21 H 1.08996 * 109.47255 * 209.99485 * 1 2 3 22 22 H 1.09000 * 109.47458 * 329.99651 * 1 2 3 23 23 H 1.08007 * 119.96316 * 359.97438 * 3 2 1 24 24 H 1.07999 * 119.92127 * 180.02562 * 4 3 2 25 25 H 1.08997 * 109.46963 * 179.97438 * 8 6 5 26 26 H 1.08991 * 109.47106 * 300.00169 * 8 6 5 27 27 H 1.09005 * 109.46671 * 60.00097 * 8 6 5 28 28 H 0.96991 * 120.00173 * 180.02562 * 12 11 9 29 29 H 1.08002 * 120.03354 * 179.97438 * 17 5 4 30 30 H 0.97008 * 120.00077 * 180.27407 * 19 18 2 31 31 H 0.96995 * 120.00716 * 0.28065 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5810 1.1967 0.0005 5 6 4.2765 0.0012 0.0016 6 6 5.7834 0.0072 0.0028 7 1 6.1508 -1.0191 0.0040 8 6 6.2916 0.7293 -1.2467 9 6 6.2820 0.7206 1.2331 10 1 5.5780 1.1292 1.9428 11 6 7.6369 0.8516 1.4525 12 7 8.0720 1.4738 2.5264 13 14 8.8545 0.1443 0.2251 14 1 9.1736 1.1684 -0.8019 15 1 10.0985 -0.2507 0.9335 16 1 8.2595 -1.0471 -0.4320 17 6 3.5915 -1.1978 0.0027 18 6 2.2023 -1.2024 -0.0049 19 7 1.5063 -2.4133 -0.0093 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5137 22 1 -0.3634 0.8899 0.5139 23 1 1.6583 2.1311 -0.0004 24 1 4.1191 2.1331 0.0010 25 1 7.3816 0.7340 -1.2455 26 1 5.9310 0.2133 -2.1364 27 1 5.9242 1.7556 -1.2478 28 1 9.0251 1.5663 2.6805 29 1 4.1352 -2.1310 0.0031 30 1 1.9929 -3.2524 -0.0087 31 1 0.5363 -2.4153 -0.0131 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260180735.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:20 Heat of formation + Delta-G solvation = -7.133623 kcal Electronic energy + Delta-G solvation = -13003.491382 eV Core-core repulsion = 10862.229465 eV Total energy + Delta-G solvation = -2141.261916 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.48854 -37.05180 -34.84717 -33.80176 -32.01597 -29.66340 -27.28940 -26.97014 -23.31464 -23.20811 -20.88533 -18.72403 -17.72517 -17.45399 -16.41356 -16.20999 -15.33832 -14.91349 -14.71051 -14.55521 -14.15609 -13.99609 -13.40744 -13.10006 -13.00688 -12.70160 -12.61692 -12.09620 -11.87738 -11.65073 -11.32918 -11.14428 -11.01662 -10.71432 -9.28918 -8.28899 -8.18026 -6.31409 0.69517 0.89807 1.31450 1.36571 1.47765 2.33662 3.04607 3.12880 3.15591 4.06160 4.14236 4.34307 4.50927 4.56439 4.74999 4.77515 4.86987 4.92542 4.96445 5.02687 5.11419 5.25317 5.43146 5.49738 5.60196 5.68169 5.84048 6.10931 6.22693 6.37209 6.71728 6.77388 7.13644 7.32537 8.89037 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.051386 B = 0.008721 C = 0.008352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.761148 B = 3210.020923 C = 3351.525557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.191 4.191 3 C -0.080 4.080 4 C -0.183 4.183 5 C -0.016 4.016 6 C 0.037 3.963 7 H 0.029 0.971 8 C -0.138 4.138 9 C -0.505 4.505 10 H 0.031 0.969 11 C 0.010 3.990 12 N -0.951 5.951 13 Si 0.952 3.048 14 H -0.266 1.266 15 H -0.298 1.298 16 H -0.247 1.247 17 C -0.217 4.217 18 C 0.213 3.787 19 N -0.867 5.867 20 H 0.073 0.927 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.135 0.865 24 H 0.100 0.900 25 H 0.033 0.967 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.266 0.734 29 H 0.117 0.883 30 H 0.403 0.597 31 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.444 -6.296 -8.473 17.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.196 4.196 3 C -0.099 4.099 4 C -0.203 4.203 5 C -0.017 4.017 6 C 0.019 3.981 7 H 0.047 0.953 8 C -0.195 4.195 9 C -0.543 4.543 10 H 0.049 0.951 11 C -0.187 4.187 12 N -0.592 5.592 13 Si 0.779 3.221 14 H -0.192 1.192 15 H -0.226 1.226 16 H -0.171 1.171 17 C -0.240 4.240 18 C 0.108 3.892 19 N -0.410 5.410 20 H 0.092 0.908 21 H 0.088 0.912 22 H 0.089 0.911 23 H 0.153 0.847 24 H 0.118 0.882 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.135 0.865 30 H 0.232 0.768 31 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -13.307 -6.220 -8.381 16.911 hybrid contribution 1.036 -0.186 0.120 1.059 sum -12.271 -6.406 -8.261 16.120 Atomic orbital electron populations 1.20551 0.89019 1.02993 1.02475 1.19612 0.97275 0.91232 1.11472 1.20987 0.93131 0.98019 0.97735 1.20783 0.94555 0.97361 1.07634 1.19795 0.95369 0.93149 0.93397 1.18252 0.90064 0.96153 0.93673 0.95255 1.22050 0.98891 1.00996 0.97611 1.21198 0.91911 1.35238 1.06004 0.95095 1.25888 1.00376 0.95183 0.97216 1.70047 1.15077 1.44854 1.29180 0.85793 0.77505 0.80184 0.78603 1.19164 1.22594 1.17125 1.20572 0.92843 0.97690 1.12916 1.17572 0.90482 0.87420 0.93765 1.42360 1.09193 1.04209 1.85198 0.90793 0.91174 0.91105 0.84700 0.88227 0.94829 0.92205 0.92888 0.92550 0.86469 0.76821 0.76298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.89 9.57 71.23 0.68 -1.21 16 2 C -0.19 -5.71 5.90 -19.74 -0.12 -5.83 16 3 C -0.08 -2.71 9.70 22.25 0.22 -2.50 16 4 C -0.18 -7.63 8.70 22.29 0.19 -7.44 16 5 C -0.02 -0.72 4.73 -19.89 -0.09 -0.81 16 6 C 0.04 1.82 2.07 -12.29 -0.03 1.80 16 7 H 0.03 1.43 6.93 -2.38 -0.02 1.41 16 8 C -0.14 -6.04 8.49 71.98 0.61 -5.43 16 9 C -0.51 -29.88 8.82 25.60 0.23 -29.65 16 10 H 0.03 2.05 7.84 -2.91 -0.02 2.02 16 11 C 0.01 0.59 5.45 84.65 0.46 1.05 16 12 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 13 Si 0.95 45.95 24.38 68.60 1.67 47.62 16 14 H -0.27 -12.16 6.87 99.48 0.68 -11.48 16 15 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 16 H -0.25 -11.06 6.53 99.48 0.65 -10.41 16 17 C -0.22 -8.22 9.52 22.40 0.21 -8.01 16 18 C 0.21 6.61 6.73 38.21 0.26 6.87 16 19 N -0.87 -18.67 8.99 -51.37 -0.46 -19.13 16 20 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 21 H 0.07 1.17 6.56 -2.39 -0.02 1.15 16 22 H 0.07 1.32 8.09 -2.39 -0.02 1.30 16 23 H 0.14 3.78 8.06 -2.91 -0.02 3.75 16 24 H 0.10 4.40 7.57 -2.91 -0.02 4.38 16 25 H 0.03 1.48 3.27 -2.39 -0.01 1.47 16 26 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.05 2.29 7.39 -2.38 -0.02 2.27 16 28 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 29 H 0.12 4.15 7.94 -2.91 -0.02 4.13 16 30 H 0.40 7.43 8.84 -92.70 -0.82 6.61 16 31 H 0.41 6.55 6.83 -92.71 -0.63 5.92 16 Total: -1.00 -69.43 251.42 3.74 -65.69 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -0.39 Total: 17.55 kcal Atomic # 6 Polarization: -53.77 SS G_CDS: 2.62 Total: -51.15 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -0.16 Total: -79.71 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.67 Total: 47.62 kcal Total: -69.43 3.74 -65.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260180735.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.554 kcal (2) G-P(sol) polarization free energy of solvation -69.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds