Wall clock time and date at job start Mon Mar 30 2020 02:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31892 * 119.61465 * 2 1 4 4 C 1.31855 * 121.72368 * 180.02562 * 3 2 1 5 5 C 1.38228 * 120.76344 * 359.97438 * 4 3 2 6 6 C 1.38628 * 119.16393 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.79391 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.46968 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.46607 * 299.99796 * 7 6 5 10 10 C 1.50699 * 109.47012 * 59.99691 * 7 6 5 11 11 H 1.08005 * 119.99852 * 354.35996 * 10 7 6 12 12 C 1.37878 * 119.99799 * 174.36346 * 10 7 6 13 13 N 1.31513 * 119.99789 * 156.97659 * 12 10 7 14 14 Si 1.86800 * 120.00014 * 336.97174 * 12 10 7 15 15 H 1.48499 * 109.46964 * 180.02562 * 14 12 10 16 16 H 1.48495 * 109.47312 * 59.99897 * 14 12 10 17 17 H 1.48504 * 109.46827 * 300.00239 * 14 12 10 18 18 C 1.38180 * 119.62011 * 180.27452 * 2 1 3 19 19 C 1.50701 * 120.41348 * 359.97438 * 18 2 1 20 20 H 1.09004 * 109.46855 * 89.99911 * 1 2 3 21 21 H 1.08998 * 109.47761 * 209.99937 * 1 2 3 22 22 H 1.08997 * 109.47611 * 330.00531 * 1 2 3 23 23 H 1.07996 * 119.61779 * 179.97438 * 4 3 2 24 24 H 1.08003 * 120.41900 * 179.97438 * 5 4 3 25 25 H 1.09004 * 109.47205 * 293.27054 * 9 7 6 26 26 H 1.08990 * 109.47399 * 53.27920 * 9 7 6 27 27 H 1.09004 * 109.46737 * 173.27997 * 9 7 6 28 28 H 0.97000 * 120.00263 * 354.91943 * 13 12 10 29 29 H 1.09009 * 109.46774 * 270.27019 * 19 18 2 30 30 H 1.08997 * 109.47650 * 30.27177 * 19 18 2 31 31 H 1.08999 * 109.47199 * 150.27741 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1466 0.0000 4 6 3.4764 1.1952 -0.0005 5 6 4.2267 0.0342 -0.0005 6 6 3.5766 -1.1902 -0.0005 7 6 4.3582 -2.4787 -0.0011 8 1 3.6681 -3.3223 -0.0006 9 6 5.2388 -2.5403 -1.2508 10 6 5.2267 -2.5399 1.2289 11 1 5.2835 -1.6898 1.8927 12 6 5.9488 -3.6812 1.5069 13 7 7.0170 -3.6136 2.2710 14 14 5.4096 -5.3233 0.7982 15 1 6.3464 -6.3860 1.2435 16 1 5.4145 -5.2480 -0.6848 17 1 4.0390 -5.6413 1.2731 18 6 2.1899 -1.2012 -0.0058 19 6 1.4372 -2.5068 -0.0114 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3634 0.8900 0.5137 23 1 3.9752 2.1530 -0.0009 24 1 5.3057 0.0804 -0.0013 25 1 4.6080 -2.6164 -2.1365 26 1 5.8450 -1.6366 -1.3131 27 1 5.8908 -3.4119 -1.1932 28 1 7.3396 -2.7521 2.5786 29 1 1.2519 -2.8238 1.0150 30 1 0.4866 -2.3759 -0.5285 31 1 2.0286 -3.2650 -0.5246 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260190549.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:09 Heat of formation + Delta-G solvation = 11.705454 kcal Electronic energy + Delta-G solvation = -13256.077593 eV Core-core repulsion = 11115.632601 eV Total energy + Delta-G solvation = -2140.444993 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.89904 -35.26446 -33.32118 -32.27431 -29.96747 -27.88186 -26.30778 -24.82710 -22.60368 -21.20905 -19.19943 -17.57365 -16.05413 -15.55678 -14.34612 -14.20226 -13.81586 -13.17571 -12.80195 -12.72402 -12.49256 -12.32841 -12.25007 -11.83337 -11.75537 -11.24629 -10.91452 -10.76782 -10.47395 -9.94058 -9.80188 -9.13814 -8.82390 -8.55042 -8.25534 -8.16008 -6.52540 -4.12989 1.69700 2.01149 3.34536 3.38615 3.56195 4.35318 4.44740 4.79186 5.11351 5.23371 5.40732 5.52189 5.60878 5.78492 5.90018 5.97970 5.99358 6.04122 6.20130 6.30177 6.39469 6.44352 6.62702 6.66647 6.82076 6.94369 7.13958 7.37586 7.48087 8.02567 8.31663 8.53888 8.82754 9.51764 10.83612 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.041018 B = 0.010824 C = 0.009582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.456780 B = 2586.168760 C = 2921.567300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.111 3.889 3 N -0.504 5.504 4 C 0.083 3.917 5 C -0.165 4.165 6 C 0.016 3.984 7 C 0.042 3.958 8 H 0.037 0.963 9 C -0.140 4.140 10 C -0.599 4.599 11 H 0.058 0.942 12 C 0.039 3.961 13 N -0.896 5.896 14 Si 1.034 2.966 15 H -0.284 1.284 16 H -0.276 1.276 17 H -0.282 1.282 18 C -0.149 4.149 19 C -0.109 4.109 20 H 0.070 0.930 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.145 0.855 24 H 0.131 0.869 25 H 0.023 0.977 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.270 0.730 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.254 3.194 -5.958 11.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.026 4.026 3 N -0.214 5.214 4 C -0.073 4.073 5 C -0.185 4.185 6 C 0.008 3.992 7 C 0.023 3.977 8 H 0.055 0.945 9 C -0.198 4.198 10 C -0.636 4.636 11 H 0.076 0.924 12 C -0.167 4.167 13 N -0.528 5.528 14 Si 0.862 3.138 15 H -0.210 1.210 16 H -0.202 1.202 17 H -0.208 1.208 18 C -0.151 4.151 19 C -0.166 4.166 20 H 0.088 0.912 21 H 0.091 0.909 22 H 0.088 0.912 23 H 0.162 0.838 24 H 0.149 0.851 25 H 0.042 0.958 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.361 2.361 -5.939 11.335 hybrid contribution 0.365 1.000 0.133 1.073 sum -8.997 3.361 -5.805 11.222 Atomic orbital electron populations 1.20639 0.89829 1.02798 1.02253 1.20941 0.96249 0.88178 0.97248 1.67371 1.10092 1.29150 1.14824 1.22518 0.89492 0.98020 0.97311 1.21979 1.01542 0.92673 1.02266 1.20619 0.92389 0.97064 0.89114 1.18280 0.93814 0.89688 0.95885 0.94481 1.22168 0.99482 1.01567 0.96597 1.21822 1.29244 1.03508 1.09073 0.92365 1.25711 0.92763 1.02631 0.95600 1.70845 1.19072 1.29083 1.33844 0.84179 0.76475 0.76479 0.76697 1.21011 1.20187 1.20820 1.20582 0.94330 0.96049 1.04152 1.20762 0.99034 0.94388 1.02411 0.91169 0.90944 0.91177 0.83770 0.85126 0.95812 0.93603 0.92637 0.92013 0.91183 0.91988 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.32 9.36 36.00 0.34 -0.98 16 2 C 0.11 2.00 6.78 -82.59 -0.56 1.44 16 3 N -0.50 -9.53 10.27 -9.47 -0.10 -9.62 16 4 C 0.08 1.52 11.18 -17.55 -0.20 1.32 16 5 C -0.16 -3.33 8.74 -39.44 -0.34 -3.67 16 6 C 0.02 0.34 4.76 -104.32 -0.50 -0.16 16 7 C 0.04 0.98 1.91 -92.92 -0.18 0.80 16 8 H 0.04 0.85 4.20 -51.93 -0.22 0.63 16 9 C -0.14 -3.03 8.84 37.16 0.33 -2.70 16 10 C -0.60 -16.33 8.51 -34.44 -0.29 -16.62 16 11 H 0.06 1.74 7.80 -52.48 -0.41 1.33 16 12 C 0.04 1.10 5.20 -17.82 -0.09 1.01 16 13 N -0.90 -26.80 13.70 55.43 0.76 -26.04 16 14 Si 1.03 24.28 26.44 -169.99 -4.49 19.78 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.28 -5.98 6.14 56.52 0.35 -5.63 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 C -0.15 -2.85 5.90 -104.48 -0.62 -3.46 16 19 C -0.11 -1.75 8.61 36.01 0.31 -1.44 16 20 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 21 H 0.07 0.86 6.71 -51.93 -0.35 0.51 16 22 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.14 2.17 8.06 -52.49 -0.42 1.75 16 24 H 0.13 2.62 7.63 -52.48 -0.40 2.22 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.04 0.96 7.26 -51.93 -0.38 0.58 16 27 H 0.05 1.24 5.46 -51.93 -0.28 0.95 16 28 H 0.27 8.06 8.73 -40.82 -0.36 7.70 16 29 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 30 H 0.06 0.80 6.73 -51.93 -0.35 0.45 16 31 H 0.07 1.20 6.21 -51.93 -0.32 0.87 16 LS Contribution 251.88 15.07 3.80 3.80 Total: -1.00 -29.97 251.88 -5.87 -35.84 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -4.03 Total: 0.72 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: -1.80 Total: -24.47 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.66 Total: -35.67 kcal Atomic # 14 Polarization: 24.28 SS G_CDS: -4.49 Total: 19.78 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.97 -5.87 -35.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260190549.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.547 kcal (2) G-P(sol) polarization free energy of solvation -29.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds