Wall clock time and date at job start Mon Mar 30 2020 02:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31892 * 119.61465 * 2 1 4 4 C 1.31855 * 121.72368 * 180.02562 * 3 2 1 5 5 C 1.38228 * 120.76344 * 359.97438 * 4 3 2 6 6 C 1.38628 * 119.16393 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.79391 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.46968 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.46607 * 299.99796 * 7 6 5 10 10 C 1.50699 * 109.47012 * 59.99691 * 7 6 5 11 11 H 1.08005 * 119.99852 * 354.35996 * 10 7 6 12 12 C 1.37878 * 119.99799 * 174.36346 * 10 7 6 13 13 N 1.31513 * 119.99789 * 156.97659 * 12 10 7 14 14 Si 1.86800 * 120.00014 * 336.97174 * 12 10 7 15 15 H 1.48499 * 109.46964 * 180.02562 * 14 12 10 16 16 H 1.48495 * 109.47312 * 59.99897 * 14 12 10 17 17 H 1.48504 * 109.46827 * 300.00239 * 14 12 10 18 18 C 1.38180 * 119.62011 * 180.27452 * 2 1 3 19 19 C 1.50701 * 120.41348 * 359.97438 * 18 2 1 20 20 H 1.09004 * 109.46855 * 89.99911 * 1 2 3 21 21 H 1.08998 * 109.47761 * 209.99937 * 1 2 3 22 22 H 1.08997 * 109.47611 * 330.00531 * 1 2 3 23 23 H 1.07996 * 119.61779 * 179.97438 * 4 3 2 24 24 H 1.08003 * 120.41900 * 179.97438 * 5 4 3 25 25 H 1.09004 * 109.47205 * 293.27054 * 9 7 6 26 26 H 1.08990 * 109.47399 * 53.27920 * 9 7 6 27 27 H 1.09004 * 109.46737 * 173.27997 * 9 7 6 28 28 H 0.97000 * 120.00263 * 354.91943 * 13 12 10 29 29 H 1.09009 * 109.46774 * 270.27019 * 19 18 2 30 30 H 1.08997 * 109.47650 * 30.27177 * 19 18 2 31 31 H 1.08999 * 109.47199 * 150.27741 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1466 0.0000 4 6 3.4764 1.1952 -0.0005 5 6 4.2267 0.0342 -0.0005 6 6 3.5766 -1.1902 -0.0005 7 6 4.3582 -2.4787 -0.0011 8 1 3.6681 -3.3223 -0.0006 9 6 5.2388 -2.5403 -1.2508 10 6 5.2267 -2.5399 1.2289 11 1 5.2835 -1.6898 1.8927 12 6 5.9488 -3.6812 1.5069 13 7 7.0170 -3.6136 2.2710 14 14 5.4096 -5.3233 0.7982 15 1 6.3464 -6.3860 1.2435 16 1 5.4145 -5.2480 -0.6848 17 1 4.0390 -5.6413 1.2731 18 6 2.1899 -1.2012 -0.0058 19 6 1.4372 -2.5068 -0.0114 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3634 0.8900 0.5137 23 1 3.9752 2.1530 -0.0009 24 1 5.3057 0.0804 -0.0013 25 1 4.6080 -2.6164 -2.1365 26 1 5.8450 -1.6366 -1.3131 27 1 5.8908 -3.4119 -1.1932 28 1 7.3396 -2.7521 2.5786 29 1 1.2519 -2.8238 1.0150 30 1 0.4866 -2.3759 -0.5285 31 1 2.0286 -3.2650 -0.5246 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260190549.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:09 Heat of formation + Delta-G solvation = -6.781885 kcal Electronic energy + Delta-G solvation = -13256.879265 eV Core-core repulsion = 11115.632601 eV Total energy + Delta-G solvation = -2141.246664 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.35733 -37.01061 -34.71471 -34.18860 -31.62794 -29.16410 -27.65249 -26.80673 -24.27984 -22.62909 -20.92310 -19.56862 -17.58946 -17.09981 -15.81797 -15.67542 -15.48491 -14.94121 -14.54903 -14.13066 -13.95482 -13.68086 -13.51728 -13.36054 -13.08895 -12.89785 -12.57259 -12.29596 -12.11484 -11.70748 -11.62391 -11.14339 -10.39896 -10.31042 -10.14566 -9.57174 -8.74103 -6.35332 0.25578 0.47392 1.47584 1.53643 1.72870 2.50281 2.89442 3.00635 3.50447 3.84659 4.01718 4.16319 4.16853 4.49049 4.61205 4.65510 4.73981 4.80050 4.81871 4.88104 4.93886 4.97034 5.10362 5.20188 5.27183 5.40838 5.46514 5.74287 5.92903 6.00339 6.10428 6.55488 7.09668 7.38143 8.59817 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.041018 B = 0.010824 C = 0.009582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.456780 B = 2586.168760 C = 2921.567300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.108 3.892 3 N -0.514 5.514 4 C 0.084 3.916 5 C -0.184 4.184 6 C -0.015 4.015 7 C 0.043 3.957 8 H 0.049 0.951 9 C -0.137 4.137 10 C -0.597 4.597 11 H 0.014 0.986 12 C -0.011 4.011 13 N -0.931 5.931 14 Si 1.073 2.927 15 H -0.291 1.291 16 H -0.243 1.243 17 H -0.259 1.259 18 C -0.158 4.158 19 C -0.109 4.109 20 H 0.092 0.908 21 H 0.091 0.909 22 H 0.075 0.925 23 H 0.173 0.827 24 H 0.117 0.883 25 H 0.053 0.947 26 H 0.039 0.961 27 H 0.046 0.954 28 H 0.253 0.747 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.897 2.660 -7.531 14.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.030 4.030 3 N -0.224 5.224 4 C -0.072 4.072 5 C -0.204 4.204 6 C -0.022 4.022 7 C 0.024 3.976 8 H 0.067 0.933 9 C -0.194 4.194 10 C -0.635 4.635 11 H 0.032 0.968 12 C -0.210 4.210 13 N -0.566 5.566 14 Si 0.893 3.107 15 H -0.217 1.217 16 H -0.167 1.167 17 H -0.184 1.184 18 C -0.160 4.160 19 C -0.166 4.166 20 H 0.111 0.889 21 H 0.110 0.890 22 H 0.094 0.906 23 H 0.190 0.810 24 H 0.135 0.865 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.023 1.853 -7.522 14.303 hybrid contribution 1.154 1.307 0.659 1.864 sum -10.869 3.161 -6.863 13.237 Atomic orbital electron populations 1.20774 0.86348 1.04105 1.04052 1.21688 0.98524 0.87421 0.95322 1.67512 1.10048 1.29795 1.15044 1.22899 0.89602 0.98519 0.96172 1.21997 1.01154 0.93549 1.03739 1.20645 0.93817 0.96435 0.91340 1.18197 0.93733 0.91393 0.94285 0.93281 1.22068 0.99450 1.00875 0.97051 1.21944 1.29746 1.01792 1.09997 0.96784 1.27157 0.92079 1.06475 0.95336 1.70977 1.21138 1.28021 1.36441 0.83715 0.76960 0.71874 0.78119 1.21713 1.16749 1.18402 1.20937 0.93503 0.98046 1.03489 1.20847 1.00299 0.92522 1.02952 0.88916 0.89007 0.90573 0.81012 0.86474 0.92850 0.94216 0.93522 0.93816 0.91057 0.88324 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.18 9.36 71.24 0.67 -1.51 16 2 C 0.11 3.58 6.78 42.54 0.29 3.87 16 3 N -0.51 -18.40 10.27 -183.89 -1.89 -20.29 16 4 C 0.08 3.00 11.18 84.69 0.95 3.95 16 5 C -0.18 -7.53 8.74 22.36 0.20 -7.34 16 6 C -0.01 -0.62 4.76 -19.67 -0.09 -0.71 16 7 C 0.04 1.95 1.91 -12.29 -0.02 1.93 16 8 H 0.05 2.13 4.20 -2.39 -0.01 2.12 16 9 C -0.14 -5.73 8.84 71.98 0.64 -5.09 16 10 C -0.60 -33.41 8.51 25.60 0.22 -33.19 16 11 H 0.01 0.88 7.80 -2.91 -0.02 0.85 16 12 C -0.01 -0.65 5.20 84.66 0.44 -0.21 16 13 N -0.93 -57.71 13.70 21.45 0.29 -57.41 16 14 Si 1.07 47.94 26.44 68.60 1.81 49.76 16 15 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 16 H -0.24 -9.58 6.14 99.48 0.61 -8.97 16 17 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 18 C -0.16 -5.68 5.90 -19.77 -0.12 -5.80 16 19 C -0.11 -3.14 8.61 71.24 0.61 -2.53 16 20 H 0.09 1.74 8.14 -2.38 -0.02 1.73 16 21 H 0.09 1.75 6.71 -2.39 -0.02 1.73 16 22 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.17 4.97 8.06 -2.91 -0.02 4.94 16 24 H 0.12 4.94 7.63 -2.91 -0.02 4.92 16 25 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.04 1.66 7.26 -2.39 -0.02 1.64 16 27 H 0.05 2.00 5.46 -2.38 -0.01 1.99 16 28 H 0.25 15.99 8.73 -92.71 -0.81 15.18 16 29 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.10 2.07 6.73 -2.39 -0.02 2.05 16 31 H 0.07 2.01 6.21 -2.39 -0.01 2.00 16 Total: -1.00 -66.27 251.88 4.97 -61.30 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.98 Total: 13.28 kcal Atomic # 6 Polarization: -50.40 SS G_CDS: 3.77 Total: -46.63 kcal Atomic # 7 Polarization: -76.11 SS G_CDS: -1.60 Total: -77.70 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 1.81 Total: 49.76 kcal Total: -66.27 4.97 -61.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260190549.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.518 kcal (2) G-P(sol) polarization free energy of solvation -66.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds