Wall clock time and date at job start Mon Mar 30 2020 02:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31593 * 1 3 3 Si 1.86799 * 120.00257 * 2 1 4 4 H 1.48503 * 109.46967 * 266.52885 * 3 2 1 5 5 H 1.48492 * 109.47206 * 26.52915 * 3 2 1 6 6 H 1.48498 * 109.47288 * 146.53225 * 3 2 1 7 7 C 1.38776 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00501 * 342.82737 * 7 2 1 9 9 N 1.36862 * 120.00054 * 162.82242 * 7 2 1 10 10 C 1.46996 * 120.53904 * 331.70670 * 9 7 2 11 11 C 1.53560 * 108.30831 * 225.41994 * 10 9 7 12 12 N 1.47106 * 108.10662 * 303.46266 * 11 10 9 13 13 C 1.39851 * 118.67361 * 44.66015 * 12 11 10 14 14 C 1.38715 * 120.51104 * 163.90304 * 13 12 11 15 15 C 1.38860 * 118.24390 * 180.02562 * 14 13 12 16 16 C 1.38177 * 119.34181 * 359.49283 * 15 14 13 17 17 N 1.31928 * 121.17892 * 0.29757 * 16 15 14 18 18 C 1.32449 * 121.61807 * 0.02562 * 17 16 15 19 19 H 0.97004 * 119.99565 * 0.02562 * 1 2 3 20 20 H 1.08995 * 109.70719 * 105.71847 * 10 9 7 21 21 H 1.08993 * 109.72738 * 345.13724 * 10 9 7 22 22 H 1.09000 * 109.73960 * 183.80612 * 11 10 9 23 23 H 1.09006 * 109.77702 * 63.13369 * 11 10 9 24 24 H 0.96996 * 120.66391 * 224.68521 * 12 11 10 25 25 H 1.08003 * 120.87871 * 359.84214 * 14 13 12 26 26 H 1.07998 * 120.33005 * 179.76452 * 15 14 13 27 27 H 1.08003 * 119.41412 * 180.31662 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2500 1.6177 0.0000 4 1 2.5709 2.0039 -1.3975 5 1 1.4128 2.6727 0.6253 6 1 3.5089 1.4624 0.7721 7 6 2.0097 -1.2019 -0.0005 8 1 1.5059 -2.1165 0.2752 9 7 3.3326 -1.2282 -0.3506 10 6 3.8796 -0.2285 -1.2791 11 6 4.7584 -0.9553 -2.3075 12 7 5.7907 -1.7067 -1.5770 13 6 5.4128 -2.4450 -0.4510 14 6 6.2542 -3.4178 0.0683 15 6 5.8316 -4.1231 1.1873 16 6 4.6037 -3.8294 1.7488 17 7 3.8245 -2.8957 1.2373 18 6 4.1825 -2.2019 0.1674 19 1 -0.4850 0.8401 -0.0004 20 1 4.4807 0.4947 -0.7282 21 1 3.0645 0.2843 -1.7896 22 1 5.2306 -0.2278 -2.9678 23 1 4.1484 -1.6427 -2.8937 24 1 6.7152 -1.6901 -1.8702 25 1 7.2116 -3.6234 -0.3875 26 1 6.4583 -4.8905 1.6171 27 1 4.2760 -4.3736 2.6222 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260193154.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:39 Heat of formation + Delta-G solvation = 70.361396 kcal Electronic energy + Delta-G solvation = -13279.746342 eV Core-core repulsion = 11038.304518 eV Total energy + Delta-G solvation = -2241.441823 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.67358 -36.64418 -34.68477 -32.06733 -30.37752 -30.06710 -26.76494 -24.32226 -23.48553 -21.74901 -20.04492 -17.43389 -16.66629 -16.50598 -15.61738 -14.97585 -14.17039 -13.92592 -13.82013 -12.90269 -12.79742 -12.62413 -12.41511 -12.09043 -11.29304 -11.20971 -10.49172 -10.36978 -10.07100 -9.88271 -9.40013 -8.75552 -8.31900 -7.64571 -6.44830 -6.34715 -3.70931 2.30540 2.36756 3.03337 3.24088 3.25633 3.94389 4.13700 4.26090 4.78478 5.15101 5.39514 5.50127 5.64709 5.65982 5.75488 5.95011 6.00391 6.13939 6.31572 6.51149 6.74574 6.99595 7.38654 7.47712 7.80945 8.11608 8.35031 8.53710 9.08246 9.38694 9.58675 10.76602 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.039617 B = 0.013851 C = 0.011302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.594162 B = 2020.970175 C = 2476.902731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.042 3.958 3 Si 0.885 3.115 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.276 4.276 8 H 0.111 0.889 9 N -0.458 5.458 10 C 0.079 3.921 11 C 0.116 3.884 12 N -0.755 5.755 13 C 0.070 3.930 14 C -0.115 4.115 15 C -0.244 4.244 16 C 0.102 3.898 17 N -0.510 5.510 18 C 0.343 3.657 19 H 0.273 0.727 20 H 0.055 0.945 21 H 0.097 0.903 22 H 0.078 0.922 23 H 0.061 0.939 24 H 0.392 0.608 25 H 0.113 0.887 26 H 0.112 0.888 27 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.830 -1.308 -3.370 11.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.162 4.162 3 Si 0.713 3.287 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.194 1.194 7 C -0.404 4.404 8 H 0.129 0.871 9 N -0.155 5.155 10 C -0.047 4.047 11 C -0.011 4.011 12 N -0.391 5.391 13 C -0.037 4.037 14 C -0.145 4.145 15 C -0.270 4.270 16 C -0.058 4.058 17 N -0.228 5.228 18 C 0.102 3.898 19 H 0.083 0.917 20 H 0.073 0.927 21 H 0.115 0.885 22 H 0.097 0.903 23 H 0.079 0.921 24 H 0.227 0.773 25 H 0.131 0.869 26 H 0.130 0.870 27 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.458 -0.737 -3.140 9.993 hybrid contribution 1.531 0.772 -0.402 1.761 sum 10.989 0.034 -3.543 11.546 Atomic orbital electron populations 1.69763 1.05777 1.27708 1.47846 1.25349 0.95460 0.98083 0.97307 0.87007 0.80036 0.83600 0.78011 1.20384 1.21693 1.19365 1.19206 0.81254 0.96420 1.43512 0.87108 1.42520 1.07118 1.26335 1.39574 1.22487 0.98076 0.92007 0.92081 1.21786 0.90515 0.95078 0.93719 1.44154 1.09063 1.55549 1.30323 1.18067 0.96613 0.97298 0.91673 1.20488 0.99274 0.96111 0.98619 1.21219 0.99462 1.05462 1.00869 1.22056 0.90743 0.94484 0.98536 1.67270 1.35081 1.09816 1.10660 1.18180 0.87353 0.94045 0.90239 0.91657 0.92667 0.88462 0.90343 0.92126 0.77346 0.86870 0.86995 0.84639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.49 13.97 55.49 0.77 -24.72 15 2 C 0.04 1.17 5.27 -17.46 -0.09 1.08 15 3 Si 0.89 21.02 24.13 -169.99 -4.10 16.92 15 4 H -0.28 -5.98 6.43 56.52 0.36 -5.61 15 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 15 6 H -0.27 -6.54 6.65 56.52 0.38 -6.16 15 7 C -0.28 -7.85 9.62 -15.11 -0.15 -7.99 15 8 H 0.11 3.49 7.96 -52.49 -0.42 3.07 15 9 N -0.46 -11.55 2.75 -114.09 -0.31 -11.86 15 10 C 0.08 1.66 4.26 -3.48 -0.01 1.65 15 11 C 0.12 1.94 7.29 -3.42 -0.02 1.91 15 12 N -0.75 -12.77 5.83 -57.68 -0.34 -13.11 15 13 C 0.07 1.42 6.53 -83.43 -0.54 0.88 15 14 C -0.11 -2.05 10.07 -39.18 -0.39 -2.44 15 15 C -0.24 -4.32 10.11 -39.37 -0.40 -4.72 15 16 C 0.10 2.05 11.16 -17.53 -0.20 1.85 15 17 N -0.51 -12.50 9.62 -12.17 -0.12 -12.62 15 18 C 0.34 8.32 7.18 -154.49 -1.11 7.21 15 19 H 0.27 7.41 8.31 -40.82 -0.34 7.07 15 20 H 0.06 1.16 6.45 -51.93 -0.33 0.83 15 21 H 0.10 2.07 5.00 -51.93 -0.26 1.81 15 22 H 0.08 1.00 8.14 -51.93 -0.42 0.58 15 23 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 24 H 0.39 5.27 8.91 -40.82 -0.36 4.91 15 25 H 0.11 1.65 8.06 -52.48 -0.42 1.22 15 26 H 0.11 1.61 8.06 -52.49 -0.42 1.19 15 27 H 0.14 2.30 8.06 -52.48 -0.42 1.88 15 LS Contribution 225.08 15.07 3.39 3.39 Total: -1.00 -31.36 225.08 -6.31 -37.67 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -2.69 Total: 4.90 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -2.92 Total: -0.57 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: 0.01 Total: -62.31 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.10 Total: 16.92 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -31.36 -6.31 -37.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260193154.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.031 kcal (2) G-P(sol) polarization free energy of solvation -31.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds