Wall clock time and date at job start Mon Mar 30 2020 02:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31593 * 1 3 3 Si 1.86799 * 120.00257 * 2 1 4 4 H 1.48503 * 109.46967 * 266.52885 * 3 2 1 5 5 H 1.48492 * 109.47206 * 26.52915 * 3 2 1 6 6 H 1.48498 * 109.47288 * 146.53225 * 3 2 1 7 7 C 1.38776 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00501 * 342.82737 * 7 2 1 9 9 N 1.36862 * 120.00054 * 162.82242 * 7 2 1 10 10 C 1.46996 * 120.53904 * 331.70670 * 9 7 2 11 11 C 1.53560 * 108.30831 * 225.41994 * 10 9 7 12 12 N 1.47106 * 108.10662 * 303.46266 * 11 10 9 13 13 C 1.39851 * 118.67361 * 44.66015 * 12 11 10 14 14 C 1.38715 * 120.51104 * 163.90304 * 13 12 11 15 15 C 1.38860 * 118.24390 * 180.02562 * 14 13 12 16 16 C 1.38177 * 119.34181 * 359.49283 * 15 14 13 17 17 N 1.31928 * 121.17892 * 0.29757 * 16 15 14 18 18 C 1.32449 * 121.61807 * 0.02562 * 17 16 15 19 19 H 0.97004 * 119.99565 * 0.02562 * 1 2 3 20 20 H 1.08995 * 109.70719 * 105.71847 * 10 9 7 21 21 H 1.08993 * 109.72738 * 345.13724 * 10 9 7 22 22 H 1.09000 * 109.73960 * 183.80612 * 11 10 9 23 23 H 1.09006 * 109.77702 * 63.13369 * 11 10 9 24 24 H 0.96996 * 120.66391 * 224.68521 * 12 11 10 25 25 H 1.08003 * 120.87871 * 359.84214 * 14 13 12 26 26 H 1.07998 * 120.33005 * 179.76452 * 15 14 13 27 27 H 1.08003 * 119.41412 * 180.31662 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2500 1.6177 0.0000 4 1 2.5709 2.0039 -1.3975 5 1 1.4128 2.6727 0.6253 6 1 3.5089 1.4624 0.7721 7 6 2.0097 -1.2019 -0.0005 8 1 1.5059 -2.1165 0.2752 9 7 3.3326 -1.2282 -0.3506 10 6 3.8796 -0.2285 -1.2791 11 6 4.7584 -0.9553 -2.3075 12 7 5.7907 -1.7067 -1.5770 13 6 5.4128 -2.4450 -0.4510 14 6 6.2542 -3.4178 0.0683 15 6 5.8316 -4.1231 1.1873 16 6 4.6037 -3.8294 1.7488 17 7 3.8245 -2.8957 1.2373 18 6 4.1825 -2.2019 0.1674 19 1 -0.4850 0.8401 -0.0004 20 1 4.4807 0.4947 -0.7282 21 1 3.0645 0.2843 -1.7896 22 1 5.2306 -0.2278 -2.9678 23 1 4.1484 -1.6427 -2.8937 24 1 6.7152 -1.6901 -1.8702 25 1 7.2116 -3.6234 -0.3875 26 1 6.4583 -4.8905 1.6171 27 1 4.2760 -4.3736 2.6222 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260193154.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:38 Heat of formation + Delta-G solvation = 46.799289 kcal Electronic energy + Delta-G solvation = -13280.768071 eV Core-core repulsion = 11038.304518 eV Total energy + Delta-G solvation = -2242.463553 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.27884 -38.25823 -36.30313 -34.01878 -31.98653 -31.60989 -28.48876 -26.09117 -25.00001 -23.42574 -21.62044 -19.31193 -18.22150 -18.07818 -17.31986 -16.70578 -15.85400 -15.45518 -15.33872 -14.64610 -14.40935 -14.26589 -14.21493 -13.57364 -12.97749 -12.77002 -12.30292 -12.03149 -11.95157 -11.52269 -11.10813 -10.59964 -9.97617 -9.27979 -8.42517 -8.04296 -5.79734 0.72952 0.81731 1.16558 1.33901 1.39670 2.18715 2.49558 2.74302 2.90710 3.39428 3.97714 4.02018 4.16749 4.21024 4.31963 4.47388 4.60081 4.66571 4.89347 5.03848 5.26099 5.43475 5.65397 5.87648 6.07202 6.33042 6.59601 7.07217 7.16448 7.48814 7.83661 8.75819 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.039617 B = 0.013851 C = 0.011302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.594162 B = 2020.970175 C = 2476.902731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.955 3.045 4 H -0.236 1.236 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.280 4.280 8 H 0.054 0.946 9 N -0.490 5.490 10 C 0.074 3.926 11 C 0.121 3.879 12 N -0.741 5.741 13 C 0.069 3.931 14 C -0.110 4.110 15 C -0.212 4.212 16 C 0.071 3.929 17 N -0.559 5.559 18 C 0.306 3.694 19 H 0.275 0.725 20 H 0.055 0.945 21 H 0.089 0.911 22 H 0.131 0.869 23 H 0.052 0.948 24 H 0.414 0.586 25 H 0.160 0.840 26 H 0.158 0.842 27 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.910 -1.396 -4.468 15.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.210 4.210 3 Si 0.780 3.220 4 H -0.160 1.160 5 H -0.222 1.222 6 H -0.204 1.204 7 C -0.409 4.409 8 H 0.072 0.928 9 N -0.193 5.193 10 C -0.051 4.051 11 C -0.005 4.005 12 N -0.379 5.379 13 C -0.039 4.039 14 C -0.140 4.140 15 C -0.236 4.236 16 C -0.087 4.087 17 N -0.277 5.277 18 C 0.067 3.933 19 H 0.084 0.916 20 H 0.073 0.927 21 H 0.107 0.893 22 H 0.149 0.851 23 H 0.070 0.930 24 H 0.252 0.748 25 H 0.178 0.822 26 H 0.175 0.825 27 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 13.625 -0.873 -4.258 14.302 hybrid contribution 0.488 0.466 0.052 0.677 sum 14.114 -0.407 -4.207 14.733 Atomic orbital electron populations 1.69896 1.07509 1.28614 1.50985 1.26042 0.96145 1.01554 0.97297 0.85900 0.77644 0.78511 0.79917 1.16041 1.22155 1.20416 1.18746 0.83409 0.94710 1.44052 0.92832 1.42508 1.06071 1.28385 1.42333 1.22581 0.98382 0.91769 0.92336 1.21842 0.90247 0.95636 0.92769 1.44105 1.10255 1.54530 1.29014 1.18259 0.95434 0.97902 0.92271 1.21070 1.00394 0.94462 0.98084 1.21783 0.98084 1.04392 0.99345 1.22586 0.91891 0.94499 0.99764 1.67175 1.37431 1.11281 1.11849 1.18665 0.89434 0.94061 0.91147 0.91568 0.92656 0.89256 0.85101 0.93009 0.74758 0.82207 0.82459 0.82590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.54 13.97 21.64 0.30 -57.24 15 2 C -0.01 -0.69 5.27 84.86 0.45 -0.24 15 3 Si 0.96 44.59 24.13 68.60 1.66 46.25 15 4 H -0.24 -9.36 6.43 99.48 0.64 -8.72 15 5 H -0.29 -13.70 7.11 99.48 0.71 -13.00 15 6 H -0.28 -13.27 6.65 99.48 0.66 -12.61 15 7 C -0.28 -16.98 9.62 84.04 0.81 -16.17 15 8 H 0.05 3.72 7.96 -2.91 -0.02 3.70 15 9 N -0.49 -25.35 2.75 -514.87 -1.42 -26.77 15 10 C 0.07 3.02 4.26 86.47 0.37 3.39 15 11 C 0.12 3.68 7.29 86.45 0.63 4.31 15 12 N -0.74 -22.05 5.83 -336.39 -1.96 -24.02 15 13 C 0.07 2.61 6.53 38.36 0.25 2.86 15 14 C -0.11 -3.38 10.07 22.53 0.23 -3.15 15 15 C -0.21 -6.55 10.11 22.40 0.23 -6.32 15 16 C 0.07 2.76 11.16 84.66 0.94 3.71 15 17 N -0.56 -28.01 9.62 -192.40 -1.85 -29.87 15 18 C 0.31 14.90 7.18 133.14 0.96 15.86 15 19 H 0.27 15.73 8.31 -92.71 -0.77 14.96 15 20 H 0.06 2.22 6.45 -2.39 -0.02 2.20 15 21 H 0.09 3.71 5.00 -2.39 -0.01 3.70 15 22 H 0.13 2.62 8.14 -2.39 -0.02 2.60 15 23 H 0.05 1.69 8.14 -2.38 -0.02 1.67 15 24 H 0.41 8.82 8.91 -92.71 -0.83 7.99 15 25 H 0.16 3.47 8.06 -2.91 -0.02 3.44 15 26 H 0.16 3.49 8.06 -2.91 -0.02 3.47 15 27 H 0.16 5.13 8.06 -2.91 -0.02 5.10 15 Total: -1.00 -74.73 225.08 1.84 -72.89 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.25 Total: 14.51 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 4.86 Total: 4.24 kcal Atomic # 7 Polarization: -132.96 SS G_CDS: -4.93 Total: -137.89 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.66 Total: 46.25 kcal Total: -74.73 1.84 -72.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260193154.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.690 kcal (2) G-P(sol) polarization free energy of solvation -74.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds