Wall clock time and date at job start Mon Mar 30 2020 02:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39300 * 126.47388 * 2 1 4 4 C 1.35962 * 108.09241 * 180.14357 * 3 2 1 5 5 C 1.50708 * 125.47574 * 179.87021 * 4 3 2 6 6 C 1.53003 * 117.51614 * 325.97945 * 5 4 3 7 7 C 1.52999 * 60.00067 * 107.48015 * 6 5 4 8 8 N 1.36164 * 109.05449 * 359.60603 * 4 3 2 9 9 C 1.46494 * 125.74607 * 180.22088 * 8 4 3 10 10 C 1.38033 * 108.50706 * 0.24638 * 8 4 3 11 11 C 1.39952 * 126.34815 * 180.02562 * 10 8 4 12 12 H 1.08004 * 119.99663 * 216.34116 * 11 10 8 13 13 C 1.40065 * 120.00419 * 36.34415 * 11 10 8 14 14 N 1.30859 * 119.99959 * 20.81038 * 13 11 10 15 15 Si 1.86799 * 119.99761 * 200.81520 * 13 11 10 16 16 H 1.48499 * 109.47221 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47343 * 119.99774 * 15 13 11 18 18 H 1.48498 * 109.46947 * 239.99738 * 15 13 11 19 19 H 1.09007 * 109.47464 * 269.83879 * 1 2 3 20 20 H 1.09001 * 109.47355 * 29.84313 * 1 2 3 21 21 H 1.09008 * 109.47059 * 149.83902 * 1 2 3 22 22 H 1.08005 * 125.95360 * 0.02562 * 3 2 1 23 23 H 1.08998 * 115.54994 * 180.27449 * 5 4 3 24 24 H 1.08998 * 117.49650 * 214.96662 * 6 5 4 25 25 H 1.08999 * 117.49644 * 359.97438 * 6 5 4 26 26 H 1.09007 * 117.49551 * 252.51206 * 7 6 5 27 27 H 1.08989 * 117.50120 * 107.49000 * 7 6 5 28 28 H 1.08999 * 109.47219 * 90.00376 * 9 8 4 29 29 H 1.09004 * 109.46999 * 209.99815 * 9 8 4 30 30 H 1.09002 * 109.47310 * 329.99929 * 9 8 4 31 31 H 0.97003 * 119.99987 * 182.93361 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3350 1.1201 0.0000 4 6 3.6253 0.6914 -0.0032 5 6 4.8423 1.5803 -0.0071 6 6 4.7477 2.9049 -0.7670 7 6 4.7561 2.8995 0.7630 8 7 3.6413 -0.6701 0.0036 9 6 4.8403 -1.5119 0.0074 10 6 2.3376 -1.1236 0.0057 11 6 1.9245 -2.4608 0.0128 12 1 1.0454 -2.7573 -0.5401 13 6 2.6511 -3.4145 0.7370 14 7 3.4408 -3.0355 1.7092 15 14 2.4928 -5.2272 0.3148 16 1 1.5434 -5.3913 -0.8151 17 1 3.8223 -5.7630 -0.0733 18 1 1.9866 -5.9685 1.4978 19 1 -0.3634 -0.0029 1.0277 20 1 -0.3634 0.8914 -0.5114 21 1 -0.3633 -0.8886 -0.5164 22 1 2.0090 2.1498 0.0004 23 1 5.8019 1.0634 -0.0141 24 1 5.6452 3.2595 -1.2738 25 1 3.8053 3.1335 -1.2645 26 1 3.8189 3.1247 1.2722 27 1 5.6588 3.2506 1.2626 28 1 5.1379 -1.7156 1.0359 29 1 4.6260 -2.4516 -0.5017 30 1 5.6489 -0.9949 -0.5093 31 1 3.9762 -3.6913 2.1827 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260203893.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:39 Heat of formation + Delta-G solvation = 39.491614 kcal Electronic energy + Delta-G solvation = -13334.298597 eV Core-core repulsion = 11195.058503 eV Total energy + Delta-G solvation = -2139.240094 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.31476 -37.66884 -35.23591 -33.83838 -30.62626 -29.38877 -26.39251 -25.64102 -23.12359 -23.01713 -20.28042 -19.62865 -18.39687 -17.04618 -16.71378 -15.65342 -15.49186 -14.88509 -14.36114 -14.20581 -13.81013 -13.39016 -13.25053 -12.97530 -12.82061 -12.63245 -12.35483 -12.26712 -12.15629 -11.86364 -11.63880 -11.23719 -11.22658 -10.65424 -8.81452 -8.64347 -8.24292 -6.11915 1.28279 1.39669 1.53216 1.88116 2.26771 2.34877 2.75595 3.24549 3.30825 3.97172 4.08662 4.32765 4.35482 4.50734 4.68973 4.82602 4.83044 4.97672 5.02529 5.03264 5.10507 5.15614 5.21285 5.36502 5.36588 5.47435 5.82354 5.97529 6.27688 6.41433 6.83908 7.08014 7.27240 7.49010 8.46809 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.040536 B = 0.011093 C = 0.009284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.579285 B = 2523.411168 C = 3015.081127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 C -0.329 4.329 3 C -0.184 4.184 4 C -0.049 4.049 5 C -0.093 4.093 6 C -0.157 4.157 7 C -0.166 4.166 8 N -0.452 5.452 9 C 0.112 3.888 10 C 0.205 3.795 11 C -0.501 4.501 12 H 0.076 0.924 13 C 0.041 3.959 14 N -0.845 5.845 15 Si 0.968 3.032 16 H -0.263 1.263 17 H -0.263 1.263 18 H -0.273 1.273 19 H 0.031 0.969 20 H 0.053 0.947 21 H 0.038 0.962 22 H 0.117 0.883 23 H 0.102 0.898 24 H 0.117 0.883 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.114 0.886 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.436 4.081 -2.567 6.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.334 4.334 3 C -0.209 4.209 4 C -0.156 4.156 5 C -0.112 4.112 6 C -0.194 4.194 7 C -0.203 4.203 8 N -0.130 5.130 9 C -0.030 4.030 10 C 0.092 3.908 11 C -0.536 4.536 12 H 0.094 0.906 13 C -0.171 4.171 14 N -0.476 5.476 15 Si 0.790 3.210 16 H -0.187 1.187 17 H -0.188 1.188 18 H -0.198 1.198 19 H 0.050 0.950 20 H 0.072 0.928 21 H 0.057 0.943 22 H 0.135 0.865 23 H 0.120 0.880 24 H 0.135 0.865 25 H 0.105 0.895 26 H 0.101 0.899 27 H 0.132 0.868 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.864 3.849 -2.378 6.643 hybrid contribution -0.148 -0.998 0.146 1.020 sum 4.716 2.850 -2.232 5.945 Atomic orbital electron populations 1.19586 0.91024 0.99647 0.98861 1.19996 0.95230 0.92675 1.25472 1.20016 0.91889 0.96703 1.12324 1.19509 0.94740 0.82630 1.18751 1.20155 0.94596 0.88647 1.07768 1.23039 1.03632 0.98517 0.94211 1.23038 1.03384 0.99275 0.94648 1.44118 1.06021 1.04827 1.58062 1.21610 0.85551 0.94040 1.01791 1.18058 0.81447 0.93605 0.97642 1.18592 1.13191 0.91613 1.30222 0.90560 1.26418 0.93803 1.04644 0.92243 1.69981 1.23413 1.38132 1.16050 0.85378 0.79238 0.77444 0.78976 1.18735 1.18764 1.19830 0.95012 0.92833 0.94278 0.86543 0.88040 0.86502 0.89491 0.89902 0.86815 0.92130 0.92719 0.91014 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.55 10.19 71.23 0.73 -0.82 16 2 C -0.33 -17.49 6.25 -19.25 -0.12 -17.62 16 3 C -0.18 -8.97 9.65 22.00 0.21 -8.76 16 4 C -0.05 -2.30 6.59 41.36 0.27 -2.03 16 5 C -0.09 -3.37 5.95 -11.54 -0.07 -3.43 16 6 C -0.16 -4.52 10.04 30.60 0.31 -4.21 16 7 C -0.17 -4.97 10.04 30.59 0.31 -4.67 16 8 N -0.45 -23.26 3.13 -523.58 -1.64 -24.90 16 9 C 0.11 5.05 8.91 127.77 1.14 6.19 16 10 C 0.20 11.53 6.13 38.94 0.24 11.77 16 11 C -0.50 -27.94 8.71 23.13 0.20 -27.74 16 12 H 0.08 4.23 7.72 -2.91 -0.02 4.21 16 13 C 0.04 2.10 4.03 85.28 0.34 2.44 16 14 N -0.85 -44.45 10.46 21.86 0.23 -44.22 16 15 Si 0.97 39.28 29.61 68.60 2.03 41.31 16 16 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 17 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 18 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 19 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 20 H 0.05 2.12 8.14 -2.39 -0.02 2.11 16 21 H 0.04 1.76 7.79 -2.38 -0.02 1.74 16 22 H 0.12 5.08 8.06 -2.91 -0.02 5.06 16 23 H 0.10 3.45 7.17 -2.39 -0.02 3.43 16 24 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 25 H 0.09 2.65 7.91 -2.39 -0.02 2.63 16 26 H 0.08 2.68 7.93 -2.38 -0.02 2.66 16 27 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 28 H 0.06 2.82 6.91 -2.39 -0.02 2.81 16 29 H 0.05 2.52 6.93 -2.38 -0.02 2.50 16 30 H 0.07 2.69 7.16 -2.39 -0.02 2.67 16 31 H 0.28 13.48 8.30 -92.71 -0.77 12.71 16 Total: -1.00 -62.11 259.46 5.28 -56.82 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 1.10 Total: 19.85 kcal Atomic # 6 Polarization: -52.43 SS G_CDS: 3.56 Total: -48.87 kcal Atomic # 7 Polarization: -67.71 SS G_CDS: -1.41 Total: -69.12 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.31 kcal Total: -62.11 5.28 -56.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260203893.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.317 kcal (2) G-P(sol) polarization free energy of solvation -62.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds