Wall clock time and date at job start Mon Mar 30 2020 02:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39303 * 126.47229 * 2 1 4 4 C 1.35973 * 108.09018 * 180.14304 * 3 2 1 5 5 C 1.50699 * 125.47235 * 179.84106 * 4 3 2 6 6 C 1.53782 * 113.61510 * 214.71793 * 5 4 3 7 7 C 1.53781 * 87.08260 * 220.02009 * 6 5 4 8 8 C 1.53786 * 87.17350 * 25.39213 * 7 6 5 9 9 N 1.36160 * 109.05320 * 359.57584 * 4 3 2 10 10 H 0.96997 * 125.74743 * 180.28162 * 9 4 3 11 11 C 1.38032 * 108.51203 * 0.26755 * 9 4 3 12 12 C 1.39949 * 126.35464 * 179.97438 * 11 9 4 13 13 H 1.07996 * 120.00102 * 180.02562 * 12 11 9 14 14 C 1.40067 * 119.99990 * 0.02562 * 12 11 9 15 15 N 1.30864 * 119.99878 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99980 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47169 * 60.00059 * 16 14 12 18 18 H 1.48505 * 109.47148 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46938 * 300.00033 * 16 14 12 20 20 H 1.09002 * 109.47069 * 270.32054 * 1 2 3 21 21 H 1.08997 * 109.47330 * 30.32377 * 1 2 3 22 22 H 1.09007 * 109.47007 * 150.32315 * 1 2 3 23 23 H 1.07998 * 125.95456 * 359.97438 * 3 2 1 24 24 H 1.09002 * 112.84923 * 345.91652 * 5 4 3 25 25 H 1.09001 * 113.61250 * 105.46827 * 6 5 4 26 26 H 1.08997 * 113.61225 * 334.56668 * 6 5 4 27 27 H 1.09002 * 113.61445 * 139.98212 * 7 6 5 28 28 H 1.09002 * 113.61408 * 270.79943 * 7 6 5 29 29 H 1.08993 * 113.61491 * 89.15923 * 8 7 6 30 30 H 1.09000 * 113.61138 * 220.06261 * 8 7 6 31 31 H 0.97001 * 119.99759 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3350 1.1202 0.0000 4 6 3.6254 0.6914 -0.0032 5 6 4.8423 1.5803 -0.0078 6 6 6.0206 1.0075 -0.8130 7 6 6.9373 1.5320 0.3047 8 6 5.7246 1.4264 1.2446 9 7 3.6414 -0.6701 0.0042 10 1 4.4352 -1.2275 0.0078 11 6 2.3377 -1.1237 0.0063 12 6 1.9245 -2.4608 0.0130 13 1 0.8715 -2.7006 0.0136 14 6 2.8768 -3.4880 0.0189 15 7 4.1527 -3.1974 0.0177 16 14 2.3253 -5.2727 0.0286 17 1 1.5107 -5.5456 -1.1826 18 1 3.5169 -6.1590 0.0344 19 1 1.5100 -5.5323 1.2423 20 1 -0.3633 0.0057 1.0277 21 1 -0.3634 0.8870 -0.5188 22 1 -0.3633 -0.8929 -0.5088 23 1 2.0090 2.1498 -0.0004 24 1 4.6087 2.6164 -0.2527 25 1 6.1750 1.5015 -1.7723 26 1 6.0075 -0.0795 -0.8928 27 1 7.7484 0.8501 0.5603 28 1 7.2786 2.5549 0.1455 29 1 5.6305 0.4543 1.7283 30 1 5.6405 2.2583 1.9439 31 1 4.8121 -3.9087 0.0222 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260231731.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:16 Heat of formation + Delta-G solvation = 30.520692 kcal Electronic energy + Delta-G solvation = -13200.449851 eV Core-core repulsion = 11060.820749 eV Total energy + Delta-G solvation = -2139.629103 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.46141 -37.35479 -33.37281 -30.80843 -28.84197 -26.32518 -25.53043 -25.03654 -22.43420 -19.53697 -18.47171 -17.91890 -16.95356 -15.46947 -14.78457 -14.67727 -13.34022 -12.88214 -12.53385 -12.10651 -11.93858 -11.87636 -11.79059 -11.33518 -11.25430 -11.14165 -10.90254 -10.65674 -10.30436 -10.04579 -9.87334 -9.75192 -9.34557 -9.25765 -6.96498 -6.81172 -6.67091 -4.10693 2.99467 3.08104 3.12237 3.88519 3.96926 4.27733 5.15549 5.21334 5.22152 5.40525 5.44333 5.70868 6.00178 6.16405 6.30058 6.30677 6.44178 6.49863 6.62219 6.72570 6.90366 6.94976 6.96851 7.02603 7.20617 7.46974 7.66080 7.98164 8.19727 8.32127 8.84083 9.03949 9.29143 9.82996 10.27377 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.030827 B = 0.011442 C = 0.008704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.090380 B = 2446.637926 C = 3216.181542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 C -0.319 4.319 3 C -0.166 4.166 4 C -0.082 4.082 5 C -0.018 4.018 6 C -0.139 4.139 7 C -0.145 4.145 8 C -0.137 4.137 9 N -0.544 5.544 10 H 0.417 0.583 11 C 0.234 3.766 12 C -0.441 4.441 13 H 0.089 0.911 14 C 0.063 3.937 15 N -0.858 5.858 16 Si 0.926 3.074 17 H -0.266 1.266 18 H -0.281 1.281 19 H -0.267 1.267 20 H 0.028 0.972 21 H 0.031 0.969 22 H 0.041 0.959 23 H 0.097 0.903 24 H 0.088 0.912 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.144 3.436 0.167 4.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.323 4.323 3 C -0.192 4.192 4 C -0.192 4.192 5 C -0.037 4.037 6 C -0.176 4.176 7 C -0.182 4.182 8 C -0.174 4.174 9 N -0.151 5.151 10 H 0.264 0.736 11 C 0.118 3.882 12 C -0.476 4.476 13 H 0.107 0.893 14 C -0.148 4.148 15 N -0.492 5.492 16 Si 0.751 3.249 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.191 1.191 20 H 0.046 0.954 21 H 0.050 0.950 22 H 0.060 0.940 23 H 0.115 0.885 24 H 0.106 0.894 25 H 0.078 0.922 26 H 0.097 0.903 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.524 3.279 0.167 4.817 hybrid contribution 0.232 -1.023 0.022 1.050 sum 3.756 2.256 0.189 4.385 Atomic orbital electron populations 1.19611 0.92998 0.98886 0.98282 1.19291 0.93329 0.92199 1.27516 1.19849 0.91934 0.96107 1.11314 1.19442 0.93859 0.84416 1.21442 1.20685 0.90466 0.97328 0.95235 1.22974 0.96505 1.01110 0.97057 1.22839 0.96844 1.00555 0.97972 1.23046 0.95799 1.01766 0.96816 1.42624 1.08774 1.04418 1.59306 0.73606 1.17799 0.81670 0.92443 0.96327 1.18764 0.94641 0.88573 1.45654 0.89316 1.25876 0.94227 1.02065 0.92588 1.68839 1.01567 1.35470 1.43334 0.86056 0.78618 0.80459 0.79717 1.19125 1.20624 1.19131 0.95363 0.95045 0.94016 0.88510 0.89354 0.92172 0.90309 0.92151 0.90789 0.90398 0.92216 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.90 10.16 36.00 0.37 -0.54 16 2 C -0.32 -8.32 6.25 -103.67 -0.65 -8.97 16 3 C -0.17 -4.10 10.64 -40.00 -0.43 -4.52 16 4 C -0.08 -1.97 6.23 -81.48 -0.51 -2.47 16 5 C -0.02 -0.34 4.20 -90.86 -0.38 -0.73 16 6 C -0.14 -2.43 7.62 -25.92 -0.20 -2.63 16 7 C -0.14 -2.17 8.08 -25.92 -0.21 -2.38 16 8 C -0.14 -2.36 7.65 -25.82 -0.20 -2.56 16 9 N -0.54 -14.20 5.56 -6.67 -0.04 -14.24 16 10 H 0.42 10.81 5.45 -40.82 -0.22 10.59 16 11 C 0.23 6.48 6.71 -83.87 -0.56 5.91 16 12 C -0.44 -11.97 9.07 -38.26 -0.35 -12.31 16 13 H 0.09 2.31 7.30 -52.49 -0.38 1.93 16 14 C 0.06 1.61 5.50 -17.28 -0.09 1.51 16 15 N -0.86 -22.00 10.69 55.56 0.59 -21.41 16 16 Si 0.93 19.30 29.56 -169.99 -5.03 14.27 16 17 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 18 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 19 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 20 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.04 0.91 7.56 -51.93 -0.39 0.51 16 23 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 24 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.08 1.53 7.11 -51.93 -0.37 1.17 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.08 1.50 8.10 -51.93 -0.42 1.08 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 LS Contribution 258.09 15.07 3.89 3.89 Total: -1.00 -27.72 258.09 -8.09 -35.81 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -4.30 Total: 11.36 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: -3.21 Total: -29.68 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.56 Total: -35.65 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -27.72 -8.09 -35.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260231731.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.330 kcal (2) G-P(sol) polarization free energy of solvation -27.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds