Wall clock time and date at job start Mon Mar 30 2020 02:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39303 * 126.47229 * 2 1 4 4 C 1.35973 * 108.09018 * 180.14304 * 3 2 1 5 5 C 1.50699 * 125.47235 * 179.84106 * 4 3 2 6 6 C 1.53782 * 113.61510 * 214.71793 * 5 4 3 7 7 C 1.53781 * 87.08260 * 220.02009 * 6 5 4 8 8 C 1.53786 * 87.17350 * 25.39213 * 7 6 5 9 9 N 1.36160 * 109.05320 * 359.57584 * 4 3 2 10 10 H 0.96997 * 125.74743 * 180.28162 * 9 4 3 11 11 C 1.38032 * 108.51203 * 0.26755 * 9 4 3 12 12 C 1.39949 * 126.35464 * 179.97438 * 11 9 4 13 13 H 1.07996 * 120.00102 * 180.02562 * 12 11 9 14 14 C 1.40067 * 119.99990 * 0.02562 * 12 11 9 15 15 N 1.30864 * 119.99878 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99980 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47169 * 60.00059 * 16 14 12 18 18 H 1.48505 * 109.47148 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46938 * 300.00033 * 16 14 12 20 20 H 1.09002 * 109.47069 * 270.32054 * 1 2 3 21 21 H 1.08997 * 109.47330 * 30.32377 * 1 2 3 22 22 H 1.09007 * 109.47007 * 150.32315 * 1 2 3 23 23 H 1.07998 * 125.95456 * 359.97438 * 3 2 1 24 24 H 1.09002 * 112.84923 * 345.91652 * 5 4 3 25 25 H 1.09001 * 113.61250 * 105.46827 * 6 5 4 26 26 H 1.08997 * 113.61225 * 334.56668 * 6 5 4 27 27 H 1.09002 * 113.61445 * 139.98212 * 7 6 5 28 28 H 1.09002 * 113.61408 * 270.79943 * 7 6 5 29 29 H 1.08993 * 113.61491 * 89.15923 * 8 7 6 30 30 H 1.09000 * 113.61138 * 220.06261 * 8 7 6 31 31 H 0.97001 * 119.99759 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3350 1.1202 0.0000 4 6 3.6254 0.6914 -0.0032 5 6 4.8423 1.5803 -0.0078 6 6 6.0206 1.0075 -0.8130 7 6 6.9373 1.5320 0.3047 8 6 5.7246 1.4264 1.2446 9 7 3.6414 -0.6701 0.0042 10 1 4.4352 -1.2275 0.0078 11 6 2.3377 -1.1237 0.0063 12 6 1.9245 -2.4608 0.0130 13 1 0.8715 -2.7006 0.0136 14 6 2.8768 -3.4880 0.0189 15 7 4.1527 -3.1974 0.0177 16 14 2.3253 -5.2727 0.0286 17 1 1.5107 -5.5456 -1.1826 18 1 3.5169 -6.1590 0.0344 19 1 1.5100 -5.5323 1.2423 20 1 -0.3633 0.0057 1.0277 21 1 -0.3634 0.8870 -0.5188 22 1 -0.3633 -0.8929 -0.5088 23 1 2.0090 2.1498 -0.0004 24 1 4.6087 2.6164 -0.2527 25 1 6.1750 1.5015 -1.7723 26 1 6.0075 -0.0795 -0.8928 27 1 7.7484 0.8501 0.5603 28 1 7.2786 2.5549 0.1455 29 1 5.6305 0.4543 1.7283 30 1 5.6405 2.2583 1.9439 31 1 4.8121 -3.9087 0.0222 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260231731.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:16 Heat of formation + Delta-G solvation = 16.204040 kcal Electronic energy + Delta-G solvation = -13201.070668 eV Core-core repulsion = 11060.820749 eV Total energy + Delta-G solvation = -2140.249919 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.27221 -38.87729 -35.30721 -32.69185 -30.73718 -28.20436 -27.16563 -26.43381 -24.21261 -21.14882 -20.31492 -19.68967 -18.85462 -17.25540 -16.38414 -16.17104 -15.02152 -14.74174 -14.33573 -13.89509 -13.48648 -13.43128 -13.35530 -13.04367 -13.01949 -12.84865 -12.54865 -12.30779 -12.23006 -11.57659 -11.45528 -11.31749 -11.06038 -10.92133 -8.91504 -8.71750 -8.65653 -6.09610 1.31038 1.38001 1.50031 2.01297 2.21957 2.39306 3.37210 3.42586 3.85338 3.88131 3.94348 4.23288 4.69414 4.75874 4.86554 4.87706 4.92298 5.04193 5.07740 5.09025 5.13755 5.17050 5.26434 5.32988 5.58346 5.63260 5.72363 6.02754 6.24346 6.37168 6.86086 7.12636 7.30330 7.84384 8.37520 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.030827 B = 0.011442 C = 0.008704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.090380 B = 2446.637926 C = 3216.181542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 C -0.342 4.342 3 C -0.192 4.192 4 C -0.078 4.078 5 C -0.029 4.029 6 C -0.141 4.141 7 C -0.122 4.122 8 C -0.136 4.136 9 N -0.552 5.552 10 H 0.414 0.586 11 C 0.186 3.814 12 C -0.477 4.477 13 H 0.087 0.913 14 C 0.021 3.979 15 N -0.879 5.879 16 Si 0.998 3.002 17 H -0.262 1.262 18 H -0.270 1.270 19 H -0.262 1.262 20 H 0.035 0.965 21 H 0.051 0.949 22 H 0.038 0.962 23 H 0.118 0.882 24 H 0.111 0.889 25 H 0.077 0.923 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.106 0.894 29 H 0.049 0.951 30 H 0.080 0.920 31 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.950 3.982 0.161 5.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.347 4.347 3 C -0.218 4.218 4 C -0.188 4.188 5 C -0.048 4.048 6 C -0.179 4.179 7 C -0.159 4.159 8 C -0.174 4.174 9 N -0.158 5.158 10 H 0.260 0.740 11 C 0.071 3.929 12 C -0.512 4.512 13 H 0.105 0.895 14 C -0.187 4.187 15 N -0.513 5.513 16 Si 0.820 3.180 17 H -0.186 1.186 18 H -0.194 1.194 19 H -0.187 1.187 20 H 0.054 0.946 21 H 0.070 0.930 22 H 0.057 0.943 23 H 0.136 0.864 24 H 0.129 0.871 25 H 0.096 0.904 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.125 0.875 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.330 3.839 0.161 5.789 hybrid contribution 0.015 -1.104 0.022 1.104 sum 4.345 2.735 0.183 5.137 Atomic orbital electron populations 1.19610 0.91019 0.99710 0.99007 1.19881 0.95184 0.92388 1.27230 1.20200 0.92249 0.96907 1.12433 1.20280 0.95743 0.84111 1.18672 1.20987 0.89117 0.97529 0.97210 1.22926 0.96689 0.99523 0.98782 1.22787 0.95741 1.02454 0.94922 1.22967 0.96662 1.01041 0.96724 1.42746 1.08313 1.05383 1.59387 0.74028 1.18309 0.82720 0.93512 0.98375 1.19004 0.95102 0.89413 1.47723 0.89507 1.26769 0.94091 1.06277 0.91540 1.68886 1.02417 1.36966 1.43069 0.84971 0.78458 0.74802 0.79788 1.18635 1.19437 1.18677 0.94601 0.92972 0.94333 0.86354 0.87080 0.90450 0.93180 0.91252 0.87515 0.93264 0.90138 0.89870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.62 10.16 71.24 0.72 -0.89 16 2 C -0.34 -18.15 6.25 -19.25 -0.12 -18.27 16 3 C -0.19 -9.49 10.64 22.00 0.23 -9.26 16 4 C -0.08 -3.75 6.23 41.36 0.26 -3.50 16 5 C -0.03 -1.08 4.20 -10.95 -0.05 -1.13 16 6 C -0.14 -4.72 7.62 31.12 0.24 -4.49 16 7 C -0.12 -3.27 8.08 31.12 0.25 -3.02 16 8 C -0.14 -4.46 7.65 31.18 0.24 -4.23 16 9 N -0.55 -29.59 5.56 -175.02 -0.97 -30.56 16 10 H 0.41 22.18 5.45 -92.71 -0.51 21.68 16 11 C 0.19 10.65 6.71 38.94 0.26 10.91 16 12 C -0.48 -26.70 9.07 23.13 0.21 -26.49 16 13 H 0.09 4.68 7.30 -2.91 -0.02 4.66 16 14 C 0.02 1.09 5.50 85.28 0.47 1.56 16 15 N -0.88 -45.91 10.69 21.86 0.23 -45.68 16 16 Si 1.00 39.63 29.56 68.60 2.03 41.65 16 17 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 18 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 19 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 20 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 21 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 22 H 0.04 1.69 7.56 -2.38 -0.02 1.68 16 23 H 0.12 5.15 8.06 -2.91 -0.02 5.13 16 24 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 25 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.05 1.95 7.11 -2.39 -0.02 1.94 16 27 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.05 1.89 8.10 -2.39 -0.02 1.87 16 30 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 Total: -1.00 -60.71 258.09 4.62 -56.10 By element: Atomic # 1 Polarization: 36.66 SS G_CDS: 0.61 Total: 37.28 kcal Atomic # 6 Polarization: -61.50 SS G_CDS: 2.72 Total: -58.79 kcal Atomic # 7 Polarization: -75.50 SS G_CDS: -0.74 Total: -76.24 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.65 kcal Total: -60.71 4.62 -56.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260231731.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.302 kcal (2) G-P(sol) polarization free energy of solvation -60.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds