Wall clock time and date at job start Mon Mar 30 2020 02:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99705 * 2 1 4 4 H 1.48503 * 109.47023 * 269.99620 * 3 2 1 5 5 H 1.48495 * 109.47252 * 29.99961 * 3 2 1 6 6 H 1.48497 * 109.46986 * 150.00050 * 3 2 1 7 7 C 1.37873 * 120.00392 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00238 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99549 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47196 * 179.97438 * 9 7 2 11 11 C 1.53510 * 114.17337 * 175.00220 * 10 9 7 12 12 N 1.47482 * 87.93436 * 139.67421 * 11 10 9 13 13 C 1.46901 * 110.99764 * 221.29834 * 12 11 10 14 14 C 1.53000 * 109.46769 * 169.99993 * 13 12 11 15 15 F 1.39904 * 109.47059 * 299.99428 * 14 13 12 16 16 F 1.39895 * 109.47411 * 59.99686 * 14 13 12 17 17 C 1.47484 * 87.83324 * 332.98752 * 12 11 10 18 18 H 0.97003 * 119.99809 * 359.97438 * 1 2 3 19 19 H 1.09011 * 109.47118 * 60.00228 * 9 7 2 20 20 H 1.08998 * 109.47760 * 300.00007 * 9 7 2 21 21 H 1.09000 * 113.25471 * 42.05226 * 10 9 7 22 22 H 1.08999 * 113.47482 * 24.90332 * 11 10 9 23 23 H 1.09004 * 113.47828 * 254.43977 * 11 10 9 24 24 H 1.09002 * 109.47401 * 49.99700 * 13 12 11 25 25 H 1.09001 * 109.46874 * 289.99713 * 13 12 11 26 26 H 1.09004 * 109.46724 * 180.02562 * 14 13 12 27 27 H 1.09002 * 113.46980 * 141.77763 * 17 12 11 28 28 H 1.08997 * 113.47937 * 272.24324 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4990 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.5934 -5.0463 0.1246 12 7 2.5666 -5.5342 -0.8704 13 6 1.9256 -6.4388 -1.8341 14 6 2.8919 -6.7252 -2.9853 15 9 3.2262 -5.5256 -3.6229 16 9 4.0514 -7.3250 -2.4826 17 6 2.6312 -4.1588 -1.3989 18 1 -0.4850 0.8401 0.0004 19 1 0.6241 -2.5574 -0.8881 20 1 0.6248 -2.5563 0.8919 21 1 3.0907 -3.5056 0.6715 22 1 0.5621 -5.0735 -0.2271 23 1 1.7157 -5.4979 1.1091 24 1 1.0221 -5.9714 -2.2258 25 1 1.6651 -7.3734 -1.3373 26 1 2.4160 -7.3961 -3.7006 27 1 3.6331 -3.8581 -1.7055 28 1 1.8769 -3.9490 -2.1572 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260252941.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:27 Heat of formation + Delta-G solvation = -100.320052 kcal Electronic energy + Delta-G solvation = -13469.558223 eV Core-core repulsion = 10770.025910 eV Total energy + Delta-G solvation = -2699.532313 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.79643 -47.83227 -40.99618 -35.36469 -33.28558 -30.49418 -27.05690 -26.84629 -24.55028 -22.37667 -20.46651 -18.53066 -18.40593 -18.21446 -17.37121 -16.60166 -16.40866 -15.70644 -15.28648 -14.72473 -14.40096 -14.22077 -13.82248 -13.55736 -13.44129 -13.36563 -12.89344 -12.72341 -12.42313 -11.89754 -11.78863 -11.44761 -11.08917 -10.94778 -10.52536 -9.91083 -8.18906 -6.28594 1.41017 1.41509 1.52856 2.42045 2.90244 3.01243 3.14208 3.37741 3.62039 3.79480 3.90187 4.05634 4.31565 4.51236 4.51663 4.60770 4.78543 4.90094 5.01201 5.16149 5.19890 5.49842 5.69680 5.83773 6.01863 6.27702 6.86628 7.40196 8.92494 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.056241 B = 0.007258 C = 0.006883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.735224 B = 3856.811179 C = 4067.138507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.960 3.040 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.537 4.537 8 H 0.056 0.944 9 C 0.039 3.961 10 C -0.108 4.108 11 C 0.012 3.988 12 N -0.481 5.481 13 C -0.041 4.041 14 C 0.262 3.738 15 F -0.223 7.223 16 F -0.215 7.215 17 C 0.020 3.980 18 H 0.263 0.737 19 H -0.004 1.004 20 H -0.002 1.002 21 H 0.081 0.919 22 H 0.075 0.925 23 H 0.094 0.906 24 H 0.080 0.920 25 H 0.129 0.871 26 H 0.161 0.839 27 H 0.067 0.933 28 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.611 -13.408 -5.057 14.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.575 4.575 8 H 0.074 0.926 9 C 0.002 3.998 10 C -0.127 4.127 11 C -0.116 4.116 12 N -0.203 5.203 13 C -0.170 4.170 14 C 0.208 3.792 15 F -0.205 7.205 16 F -0.197 7.197 17 C -0.109 4.109 18 H 0.072 0.928 19 H 0.015 0.985 20 H 0.016 0.984 21 H 0.100 0.900 22 H 0.093 0.907 23 H 0.112 0.888 24 H 0.098 0.902 25 H 0.147 0.853 26 H 0.178 0.822 27 H 0.086 0.914 28 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.111 -13.688 -4.876 14.859 hybrid contribution -0.439 1.469 -0.308 1.563 sum 2.673 -12.219 -5.184 13.539 Atomic orbital electron populations 1.70076 1.07621 1.27688 1.51914 1.25899 0.95722 1.03070 0.94848 0.85516 0.78722 0.78828 0.78418 1.19927 1.20683 1.18983 1.21640 0.93368 0.92344 1.50126 0.92615 1.18904 0.93562 0.92295 0.95059 1.22709 0.99036 0.94092 0.96867 1.23862 0.95205 0.94547 0.98007 1.68950 1.35081 1.06383 1.09918 1.23980 0.96485 1.01944 0.94625 1.22468 0.82354 0.81097 0.93248 1.92963 1.93780 1.50336 1.83423 1.92948 1.53885 1.83537 1.89322 1.23743 1.01229 0.89040 0.96899 0.92798 0.98539 0.98375 0.90042 0.90721 0.88791 0.90216 0.85341 0.82188 0.91432 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.39 13.29 21.45 0.28 -56.11 15 2 C 0.00 0.13 5.46 84.65 0.46 0.59 15 3 Si 0.96 44.62 29.54 68.60 2.03 46.64 15 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 15 5 H -0.28 -12.73 7.11 99.48 0.71 -12.03 15 6 H -0.27 -11.89 7.11 99.48 0.71 -11.19 15 7 C -0.54 -30.62 9.09 25.60 0.23 -30.39 15 8 H 0.06 3.11 7.74 -2.91 -0.02 3.08 15 9 C 0.04 2.04 4.88 29.85 0.15 2.18 15 10 C -0.11 -4.49 3.93 -10.45 -0.04 -4.53 15 11 C 0.01 0.39 7.29 83.57 0.61 1.00 15 12 N -0.48 -15.28 6.34 -927.84 -5.88 -21.17 15 13 C -0.04 -0.94 5.21 86.30 0.45 -0.49 15 14 C 0.26 5.69 5.59 71.98 0.40 6.09 15 15 F -0.22 -6.48 15.43 44.97 0.69 -5.78 15 16 F -0.22 -5.79 17.26 44.97 0.78 -5.02 15 17 C 0.02 0.74 5.49 83.57 0.46 1.20 15 18 H 0.26 14.96 8.31 -92.71 -0.77 14.19 15 19 H 0.00 -0.21 7.81 -2.38 -0.02 -0.22 15 20 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 15 21 H 0.08 3.49 8.12 -2.39 -0.02 3.47 15 22 H 0.07 2.32 7.73 -2.39 -0.02 2.30 15 23 H 0.09 2.78 8.14 -2.38 -0.02 2.76 15 24 H 0.08 1.72 7.56 -2.39 -0.02 1.70 15 25 H 0.13 2.24 8.14 -2.39 -0.02 2.22 15 26 H 0.16 1.82 8.14 -2.39 -0.02 1.80 15 27 H 0.07 2.66 8.11 -2.39 -0.02 2.64 15 28 H 0.06 2.46 7.34 -2.39 -0.02 2.44 15 Total: -1.00 -66.12 245.39 1.76 -64.36 By element: Atomic # 1 Polarization: 0.27 SS G_CDS: 1.14 Total: 1.41 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: 2.72 Total: -24.34 kcal Atomic # 7 Polarization: -71.68 SS G_CDS: -5.60 Total: -77.27 kcal Atomic # 9 Polarization: -12.27 SS G_CDS: 1.47 Total: -10.80 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -66.12 1.76 -64.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260252941.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.962 kcal (2) G-P(sol) polarization free energy of solvation -66.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds