Wall clock time and date at job start Mon Mar 30 2020 02:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00148 * 2 1 4 4 H 1.48499 * 109.47198 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47353 * 300.00523 * 3 2 1 6 6 H 1.48499 * 109.46900 * 60.00270 * 3 2 1 7 7 C 1.38762 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00323 * 164.54011 * 7 2 1 9 9 N 1.36797 * 119.99946 * 344.53894 * 7 2 1 10 10 C 1.47091 * 120.63073 * 334.06666 * 9 7 2 11 11 C 1.53556 * 108.13907 * 224.74156 * 10 9 7 12 12 N 1.47010 * 108.31217 * 303.45293 * 11 10 9 13 13 C 1.39483 * 118.81103 * 45.27542 * 12 11 10 14 14 N 1.32300 * 120.11554 * 163.29283 * 13 12 11 15 15 C 1.32044 * 121.64008 * 179.76405 * 14 13 12 16 16 C 1.38120 * 121.19171 * 0.02562 * 15 14 13 17 17 C 1.38804 * 119.35820 * 0.04869 * 16 15 14 18 18 C 1.38882 * 118.22593 * 359.97438 * 17 16 15 19 19 H 0.96997 * 120.00315 * 5.09239 * 1 2 3 20 20 H 1.09001 * 109.72966 * 105.08252 * 10 9 7 21 21 H 1.08999 * 109.73342 * 344.40352 * 10 9 7 22 22 H 1.09003 * 109.69627 * 63.16071 * 11 10 9 23 23 H 1.08992 * 109.70784 * 183.72755 * 11 10 9 24 24 H 0.96998 * 120.56153 * 225.32609 * 12 11 10 25 25 H 1.08001 * 119.40165 * 180.02562 * 15 14 13 26 26 H 1.08005 * 120.32020 * 180.02562 * 16 15 14 27 27 H 1.08001 * 120.88829 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2125 7 6 2.0100 -1.2017 -0.0005 8 1 3.0606 -1.2186 -0.2498 9 7 1.3631 -2.3651 0.3148 10 6 0.1686 -2.3496 1.1730 11 6 0.3045 -3.4814 2.2019 12 7 0.4895 -4.7461 1.4756 13 6 1.3900 -4.7844 0.4111 14 7 1.8282 -5.9460 -0.0461 15 6 2.6772 -6.0176 -1.0549 16 6 3.1459 -4.8773 -1.6776 17 6 2.7170 -3.6342 -1.2335 18 6 1.8244 -3.5885 -0.1705 19 1 -0.4850 0.8367 -0.0746 20 1 -0.7226 -2.5091 0.5661 21 1 0.0975 -1.3913 1.6874 22 1 1.1675 -3.2951 2.8411 23 1 -0.5983 -3.5355 2.8101 24 1 -0.0066 -5.5392 1.7320 25 1 3.0110 -6.9852 -1.3993 26 1 3.8398 -4.9522 -2.5019 27 1 3.0673 -2.7266 -1.7026 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260272337.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:41 Heat of formation + Delta-G solvation = 40.535209 kcal Electronic energy + Delta-G solvation = -13213.663671 eV Core-core repulsion = 10970.928487 eV Total energy + Delta-G solvation = -2242.735184 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.15242 -38.16814 -36.15776 -33.89783 -31.72449 -31.32701 -28.48767 -26.00983 -24.72372 -23.48955 -21.26573 -19.17402 -18.49961 -17.92988 -17.07499 -16.37356 -15.56788 -15.26395 -15.19850 -15.02945 -14.12975 -14.01575 -13.70863 -13.24979 -12.94876 -12.74521 -12.41896 -12.10005 -11.99148 -11.35564 -10.94298 -10.64630 -10.18645 -9.19365 -8.32208 -8.01520 -5.68469 0.79977 0.83494 1.42786 1.44851 1.55548 2.26057 2.51017 2.92485 3.13292 3.41988 4.13547 4.19034 4.33428 4.45235 4.52293 4.64159 4.66677 4.95164 5.11902 5.29344 5.38150 5.46049 5.63471 5.94526 6.09308 6.35627 6.71943 6.99401 7.39607 7.55672 7.79303 8.73619 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.040866 B = 0.012249 C = 0.009903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.999880 B = 2285.305419 C = 2826.834230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.016 4.016 3 Si 0.990 3.010 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.275 1.275 7 C -0.316 4.316 8 H 0.083 0.917 9 N -0.474 5.474 10 C 0.137 3.863 11 C 0.118 3.882 12 N -0.733 5.733 13 C 0.291 3.709 14 N -0.519 5.519 15 C 0.015 3.985 16 C -0.157 4.157 17 C -0.177 4.177 18 C 0.094 3.906 19 H 0.270 0.730 20 H 0.029 0.971 21 H 0.083 0.917 22 H 0.048 0.952 23 H 0.120 0.880 24 H 0.406 0.594 25 H 0.171 0.829 26 H 0.148 0.852 27 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.829 -4.046 1.910 4.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.216 4.216 3 Si 0.815 3.185 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.200 1.200 7 C -0.445 4.445 8 H 0.101 0.899 9 N -0.167 5.167 10 C 0.012 3.988 11 C -0.008 4.008 12 N -0.374 5.374 13 C 0.049 3.951 14 N -0.237 5.237 15 C -0.142 4.142 16 C -0.180 4.180 17 C -0.209 4.209 18 C -0.022 4.022 19 H 0.080 0.920 20 H 0.047 0.953 21 H 0.101 0.899 22 H 0.067 0.933 23 H 0.138 0.862 24 H 0.243 0.757 25 H 0.188 0.812 26 H 0.166 0.834 27 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.317 -4.230 2.509 5.091 hybrid contribution 0.267 1.495 -0.541 1.612 sum 1.584 -2.735 1.967 3.723 Atomic orbital electron populations 1.70112 1.07050 1.28450 1.49020 1.26119 0.96333 1.02466 0.96672 0.84892 0.78482 0.77309 0.77858 1.18888 1.20610 1.20011 1.19689 0.94009 0.84112 1.46684 0.89884 1.42576 1.26889 1.02068 1.45177 1.21669 0.86755 0.98673 0.91662 1.22021 1.02259 0.83034 0.93454 1.44018 1.46156 1.12980 1.34200 1.18081 0.96540 0.88020 0.92434 1.66903 1.14967 1.25949 1.15838 1.22227 0.97917 0.98959 0.95053 1.21789 1.02253 0.91776 1.02163 1.20857 1.03538 0.98706 0.97831 1.18883 1.00742 0.86782 0.95769 0.92028 0.95291 0.89858 0.93331 0.86201 0.75729 0.81217 0.83411 0.86712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.51 11.12 21.64 0.24 -48.27 15 2 C -0.02 -0.79 4.96 84.85 0.42 -0.37 15 3 Si 0.99 40.72 29.58 68.60 2.03 42.75 15 4 H -0.26 -10.58 7.11 99.48 0.71 -9.88 15 5 H -0.28 -11.40 7.11 99.48 0.71 -10.69 15 6 H -0.27 -10.97 7.11 99.48 0.71 -10.26 15 7 C -0.32 -16.83 8.73 84.04 0.73 -16.09 15 8 H 0.08 4.39 7.09 -2.91 -0.02 4.37 15 9 N -0.47 -24.40 2.99 -508.77 -1.52 -25.92 15 10 C 0.14 6.36 5.17 86.45 0.45 6.81 15 11 C 0.12 4.30 7.26 86.47 0.63 4.92 15 12 N -0.73 -28.04 5.85 -342.01 -2.00 -30.04 15 13 C 0.29 13.04 7.57 133.12 1.01 14.05 15 14 N -0.52 -21.82 10.39 -192.21 -2.00 -23.82 15 15 C 0.01 0.55 11.16 84.63 0.94 1.49 15 16 C -0.16 -5.89 10.10 22.38 0.23 -5.66 15 17 C -0.18 -8.03 9.33 22.56 0.21 -7.82 15 18 C 0.09 4.63 6.33 38.49 0.24 4.88 15 19 H 0.27 13.61 8.32 -92.71 -0.77 12.84 15 20 H 0.03 1.44 8.14 -2.39 -0.02 1.42 15 21 H 0.08 4.05 6.40 -2.39 -0.02 4.03 15 22 H 0.05 1.80 8.14 -2.39 -0.02 1.78 15 23 H 0.12 3.28 8.14 -2.39 -0.02 3.26 15 24 H 0.41 13.26 8.96 -92.71 -0.83 12.43 15 25 H 0.17 4.88 8.06 -2.91 -0.02 4.86 15 26 H 0.15 4.34 8.06 -2.91 -0.02 4.32 15 27 H 0.11 5.30 6.91 -2.91 -0.02 5.28 15 Total: -1.00 -61.31 230.10 1.97 -59.34 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.36 Total: 23.75 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 4.86 Total: 2.20 kcal Atomic # 7 Polarization: -122.77 SS G_CDS: -5.28 Total: -128.05 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -61.31 1.97 -59.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260272337.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.880 kcal (2) G-P(sol) polarization free energy of solvation -61.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds