Wall clock time and date at job start Mon Mar 30 2020 02:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86808 * 119.99577 * 2 1 4 4 H 1.48497 * 109.46762 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46984 * 299.99639 * 3 2 1 6 6 H 1.48496 * 109.47077 * 60.00186 * 3 2 1 7 7 C 1.37867 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00112 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00522 * 359.97438 * 7 2 1 10 10 C 1.50694 * 109.47572 * 180.02562 * 9 7 2 11 11 C 1.41043 * 126.33276 * 265.00144 * 10 9 7 12 12 C 1.34977 * 107.46590 * 179.97438 * 11 10 9 13 13 N 1.36000 * 108.21833 * 359.96731 * 12 11 10 14 14 C 1.34319 * 126.33625 * 85.00556 * 10 9 7 15 15 C 1.50962 * 127.44483 * 0.09445 * 14 10 9 16 16 C 1.53420 * 108.14798 * 164.21485 * 15 14 10 17 17 C 1.53126 * 109.21433 * 48.78385 * 16 15 14 18 18 C 1.46751 * 127.15626 * 180.13697 * 13 12 11 19 19 H 0.96994 * 120.00099 * 359.97438 * 1 2 3 20 20 H 1.09005 * 109.46699 * 60.00592 * 9 7 2 21 21 H 1.08997 * 109.47203 * 300.01048 * 9 7 2 22 22 H 1.07995 * 126.26934 * 359.97438 * 11 10 9 23 23 H 1.08006 * 125.89504 * 179.97438 * 12 11 10 24 24 H 1.09001 * 109.72717 * 44.55591 * 15 14 10 25 25 H 1.09001 * 109.73418 * 283.88406 * 15 14 10 26 26 H 1.08999 * 109.51779 * 288.86411 * 16 15 14 27 27 H 1.09002 * 109.51795 * 168.69997 * 16 15 14 28 28 H 1.09001 * 109.45188 * 50.07159 * 17 16 15 29 29 H 1.09004 * 109.44752 * 169.99033 * 17 16 15 30 30 H 1.09001 * 109.58477 * 42.79990 * 18 13 12 31 31 H 1.09000 * 109.58131 * 282.37857 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2305 -3.6445 -0.0005 11 6 2.6983 -4.3440 -1.1324 12 6 3.5576 -5.2897 -0.6977 13 7 3.6385 -5.2003 0.6570 14 6 2.8193 -4.1882 1.0774 15 6 2.6397 -3.7870 2.5216 16 6 3.1852 -4.9179 3.4031 17 6 4.5768 -5.3185 2.9051 18 6 4.4544 -6.0282 1.5528 19 1 -0.4850 0.8400 0.0004 20 1 0.6243 -2.5567 -0.8904 21 1 0.6247 -2.5571 0.8896 22 1 2.4199 -4.1571 -2.1590 23 1 4.0894 -5.9956 -1.3185 24 1 1.5811 -3.6344 2.7322 25 1 3.1909 -2.8677 2.7195 26 1 2.5173 -5.7775 3.3475 27 1 3.2529 -4.5746 4.4354 28 1 5.1927 -4.4262 2.7924 29 1 5.0410 -5.9906 3.6269 30 1 5.4459 -6.1656 1.1213 31 1 3.9760 -6.9979 1.6907 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260434333.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:18 Heat of formation + Delta-G solvation = 29.116123 kcal Electronic energy + Delta-G solvation = -13180.501607 eV Core-core repulsion = 11040.811597 eV Total energy + Delta-G solvation = -2139.690009 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.74423 -35.63593 -33.42149 -31.91961 -29.09040 -28.45534 -25.68071 -23.63549 -22.63479 -20.83297 -19.17290 -17.58978 -16.16457 -15.92797 -15.03100 -14.31446 -13.86873 -13.79424 -13.27146 -12.88391 -12.73174 -12.14584 -11.67271 -11.45724 -11.05841 -11.01160 -10.79747 -10.61982 -10.58994 -10.47284 -9.98061 -9.46257 -9.19852 -8.24643 -7.52974 -6.95549 -5.85531 -3.87317 3.02277 3.38024 3.45138 3.50418 3.57235 4.02942 4.59795 4.74742 4.85723 5.01741 5.37344 5.44687 5.47526 5.55984 5.69004 5.81256 5.91827 6.07038 6.14904 6.42853 6.50989 6.59463 6.75935 7.11464 7.34761 7.74320 7.80828 8.05013 8.11829 8.18535 8.35026 8.61590 9.18944 9.74992 11.23718 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.039817 B = 0.009327 C = 0.008573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.048572 B = 3001.228463 C = 3265.286485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.053 3.947 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.496 4.496 8 H 0.054 0.946 9 C 0.081 3.919 10 C -0.110 4.110 11 C -0.197 4.197 12 C -0.036 4.036 13 N -0.459 5.459 14 C -0.005 4.005 15 C -0.040 4.040 16 C -0.123 4.123 17 C -0.132 4.132 18 C 0.112 3.888 19 H 0.258 0.742 20 H 0.021 0.979 21 H 0.021 0.979 22 H 0.126 0.874 23 H 0.148 0.852 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.883 -11.154 5.059 14.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.535 4.535 8 H 0.072 0.928 9 C 0.044 3.956 10 C -0.115 4.115 11 C -0.223 4.223 12 C -0.164 4.164 13 N -0.138 5.138 14 C -0.113 4.113 15 C -0.078 4.078 16 C -0.161 4.161 17 C -0.169 4.169 18 C -0.010 4.010 19 H 0.068 0.932 20 H 0.040 0.960 21 H 0.039 0.961 22 H 0.144 0.856 23 H 0.165 0.835 24 H 0.099 0.901 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.963 -11.266 5.280 14.772 hybrid contribution 0.573 0.887 -0.210 1.077 sum 8.535 -10.379 5.071 14.362 Atomic orbital electron populations 1.69977 1.05916 1.26214 1.51818 1.25011 0.94812 0.98956 0.95860 0.86582 0.80179 0.84106 0.77442 1.19862 1.21131 1.21168 1.21200 0.92997 0.90267 1.49008 0.92807 1.17677 0.91898 0.88817 0.97256 1.19944 1.01746 0.99058 0.90799 1.20887 1.03139 0.99558 0.98692 1.21388 1.07010 1.05147 0.82858 1.43922 1.36033 1.28219 1.05671 1.20007 1.00423 0.95105 0.95732 1.20131 1.02147 0.97213 0.88318 1.21651 0.95649 0.99346 0.99433 1.21820 0.98766 1.01112 0.95232 1.21727 0.94931 0.93837 0.90483 0.93232 0.96025 0.96126 0.85575 0.83473 0.90057 0.90522 0.91994 0.91372 0.90936 0.90613 0.90641 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.29 55.43 0.74 -26.81 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 4 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 7 C -0.50 -14.61 9.09 -34.44 -0.31 -14.92 16 8 H 0.05 1.60 7.74 -52.48 -0.41 1.19 16 9 C 0.08 2.24 5.26 -29.04 -0.15 2.09 16 10 C -0.11 -2.63 5.32 -104.94 -0.56 -3.19 16 11 C -0.20 -4.24 10.82 -39.68 -0.43 -4.67 16 12 C -0.04 -0.65 11.51 -16.86 -0.19 -0.84 16 13 N -0.46 -8.19 3.15 -112.20 -0.35 -8.54 16 14 C 0.00 -0.10 6.55 -81.62 -0.53 -0.63 16 15 C -0.04 -0.73 6.00 -27.54 -0.17 -0.89 16 16 C -0.12 -1.65 5.96 -26.45 -0.16 -1.80 16 17 C -0.13 -1.56 5.92 -26.55 -0.16 -1.72 16 18 C 0.11 1.44 6.96 -3.79 -0.03 1.42 16 19 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 20 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.02 0.59 7.86 -51.93 -0.41 0.18 16 22 H 0.13 2.58 8.06 -52.49 -0.42 2.16 16 23 H 0.15 2.12 8.06 -52.48 -0.42 1.70 16 24 H 0.08 1.52 7.91 -51.93 -0.41 1.11 16 25 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 26 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.94 8.11 -51.93 -0.42 0.51 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 259.15 15.07 3.91 3.91 Total: -1.00 -32.52 259.15 -8.10 -40.62 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -4.58 Total: -2.77 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: -2.79 Total: -23.69 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.38 Total: -35.35 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.52 -8.10 -40.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260434333.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.734 kcal (2) G-P(sol) polarization free energy of solvation -32.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds