Wall clock time and date at job start Mon Mar 30 2020 02:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86808 * 119.99577 * 2 1 4 4 H 1.48497 * 109.46762 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46984 * 299.99639 * 3 2 1 6 6 H 1.48496 * 109.47077 * 60.00186 * 3 2 1 7 7 C 1.37867 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00112 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00522 * 359.97438 * 7 2 1 10 10 C 1.50694 * 109.47572 * 180.02562 * 9 7 2 11 11 C 1.41043 * 126.33276 * 265.00144 * 10 9 7 12 12 C 1.34977 * 107.46590 * 179.97438 * 11 10 9 13 13 N 1.36000 * 108.21833 * 359.96731 * 12 11 10 14 14 C 1.34319 * 126.33625 * 85.00556 * 10 9 7 15 15 C 1.50962 * 127.44483 * 0.09445 * 14 10 9 16 16 C 1.53420 * 108.14798 * 164.21485 * 15 14 10 17 17 C 1.53126 * 109.21433 * 48.78385 * 16 15 14 18 18 C 1.46751 * 127.15626 * 180.13697 * 13 12 11 19 19 H 0.96994 * 120.00099 * 359.97438 * 1 2 3 20 20 H 1.09005 * 109.46699 * 60.00592 * 9 7 2 21 21 H 1.08997 * 109.47203 * 300.01048 * 9 7 2 22 22 H 1.07995 * 126.26934 * 359.97438 * 11 10 9 23 23 H 1.08006 * 125.89504 * 179.97438 * 12 11 10 24 24 H 1.09001 * 109.72717 * 44.55591 * 15 14 10 25 25 H 1.09001 * 109.73418 * 283.88406 * 15 14 10 26 26 H 1.08999 * 109.51779 * 288.86411 * 16 15 14 27 27 H 1.09002 * 109.51795 * 168.69997 * 16 15 14 28 28 H 1.09001 * 109.45188 * 50.07159 * 17 16 15 29 29 H 1.09004 * 109.44752 * 169.99033 * 17 16 15 30 30 H 1.09001 * 109.58477 * 42.79990 * 18 13 12 31 31 H 1.09000 * 109.58131 * 282.37857 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2305 -3.6445 -0.0005 11 6 2.6983 -4.3440 -1.1324 12 6 3.5576 -5.2897 -0.6977 13 7 3.6385 -5.2003 0.6570 14 6 2.8193 -4.1882 1.0774 15 6 2.6397 -3.7870 2.5216 16 6 3.1852 -4.9179 3.4031 17 6 4.5768 -5.3185 2.9051 18 6 4.4544 -6.0282 1.5528 19 1 -0.4850 0.8400 0.0004 20 1 0.6243 -2.5567 -0.8904 21 1 0.6247 -2.5571 0.8896 22 1 2.4199 -4.1571 -2.1590 23 1 4.0894 -5.9956 -1.3185 24 1 1.5811 -3.6344 2.7322 25 1 3.1909 -2.8677 2.7195 26 1 2.5173 -5.7775 3.3475 27 1 3.2529 -4.5746 4.4354 28 1 5.1927 -4.4262 2.7924 29 1 5.0410 -5.9906 3.6269 30 1 5.4459 -6.1656 1.1213 31 1 3.9760 -6.9979 1.6907 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260434333.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:18 Heat of formation + Delta-G solvation = 9.978364 kcal Electronic energy + Delta-G solvation = -13181.331482 eV Core-core repulsion = 11040.811597 eV Total energy + Delta-G solvation = -2140.519885 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.22461 -36.86214 -35.44913 -33.66947 -30.79054 -29.96312 -27.45073 -25.06278 -24.47718 -22.11935 -20.69027 -19.03871 -18.43796 -17.40983 -16.45655 -16.17494 -15.07396 -14.98246 -14.68101 -14.42476 -14.19335 -14.15493 -13.59971 -13.19514 -12.83075 -12.52521 -12.38110 -12.22484 -11.89761 -11.78510 -11.54861 -11.44476 -11.41869 -10.55287 -9.10217 -8.63023 -8.10336 -6.25841 1.37544 1.39232 1.50790 1.53934 2.24982 2.27174 2.49089 3.15070 3.74574 3.87953 3.95300 4.14286 4.38497 4.46073 4.53882 4.67382 4.85718 4.89974 4.92963 5.01457 5.10176 5.15052 5.28966 5.35019 5.42102 5.60183 5.82605 5.92849 6.23700 6.40287 6.56055 6.82664 6.87479 7.41772 8.95898 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.039817 B = 0.009327 C = 0.008573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.048572 B = 3001.228463 C = 3265.286485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.046 0.954 9 C 0.095 3.905 10 C -0.164 4.164 11 C -0.239 4.239 12 C -0.007 4.007 13 N -0.452 5.452 14 C -0.006 4.006 15 C -0.045 4.045 16 C -0.115 4.115 17 C -0.128 4.128 18 C 0.101 3.899 19 H 0.264 0.736 20 H -0.014 1.014 21 H -0.007 1.007 22 H 0.121 0.879 23 H 0.196 0.804 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.119 0.881 30 H 0.105 0.895 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.567 -12.542 6.135 17.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.199 1.199 7 C -0.552 4.552 8 H 0.064 0.936 9 C 0.057 3.943 10 C -0.170 4.170 11 C -0.264 4.264 12 C -0.137 4.137 13 N -0.129 5.129 14 C -0.117 4.117 15 C -0.083 4.083 16 C -0.153 4.153 17 C -0.166 4.166 18 C -0.019 4.019 19 H 0.072 0.928 20 H 0.004 0.996 21 H 0.012 0.988 22 H 0.139 0.861 23 H 0.213 0.787 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.109 0.891 28 H 0.079 0.921 29 H 0.137 0.863 30 H 0.123 0.877 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.663 -12.682 6.372 17.752 hybrid contribution -0.281 1.249 -0.542 1.390 sum 10.382 -11.433 5.830 16.508 Atomic orbital electron populations 1.70107 1.07648 1.27596 1.52179 1.25956 0.95791 1.03031 0.94987 0.85406 0.78795 0.78863 0.78028 1.19183 1.20189 1.19855 1.21410 0.92661 0.91568 1.49597 0.93602 1.17332 0.92112 0.90730 0.94097 1.19783 1.03595 0.99917 0.93717 1.20991 1.05680 1.01667 0.98099 1.21933 1.04680 1.03693 0.83387 1.44286 1.35063 1.27286 1.06283 1.20162 1.00074 0.95394 0.96023 1.20175 1.01072 0.98838 0.88260 1.21625 0.96717 0.97441 0.99471 1.21867 0.97400 1.01561 0.95733 1.22251 0.95708 0.93900 0.90022 0.92752 0.99600 0.98848 0.86130 0.78701 0.92166 0.92037 0.91310 0.89125 0.92131 0.86273 0.87710 0.88738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.42 13.29 21.44 0.28 -59.13 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.96 46.66 29.54 68.60 2.03 48.69 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 7 C -0.51 -31.82 9.09 25.60 0.23 -31.59 16 8 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 9 C 0.09 5.67 5.26 29.10 0.15 5.82 16 10 C -0.16 -8.28 5.32 -20.07 -0.11 -8.39 16 11 C -0.24 -10.55 10.82 22.21 0.24 -10.31 16 12 C -0.01 -0.23 11.51 83.30 0.96 0.73 16 13 N -0.45 -15.01 3.15 -508.89 -1.60 -16.62 16 14 C -0.01 -0.27 6.55 40.97 0.27 0.00 16 15 C -0.05 -1.66 6.00 30.07 0.18 -1.48 16 16 C -0.12 -2.77 5.96 30.78 0.18 -2.59 16 17 C -0.13 -2.48 5.92 30.71 0.18 -2.30 16 18 C 0.10 2.10 6.96 86.40 0.60 2.70 16 19 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 20 H -0.01 -0.93 8.14 -2.38 -0.02 -0.95 16 21 H -0.01 -0.42 7.86 -2.39 -0.02 -0.44 16 22 H 0.12 5.21 8.06 -2.91 -0.02 5.19 16 23 H 0.20 4.69 8.06 -2.91 -0.02 4.67 16 24 H 0.06 2.40 7.91 -2.39 -0.02 2.38 16 25 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.07 1.59 8.12 -2.39 -0.02 1.57 16 27 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.06 1.35 8.11 -2.39 -0.02 1.33 16 29 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.09 1.58 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -75.11 259.15 5.15 -69.96 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: 1.09 Total: 4.10 kcal Atomic # 6 Polarization: -50.35 SS G_CDS: 3.35 Total: -46.99 kcal Atomic # 7 Polarization: -74.43 SS G_CDS: -1.32 Total: -75.75 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -75.11 5.15 -69.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260434333.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.934 kcal (2) G-P(sol) polarization free energy of solvation -75.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds