Wall clock time and date at job start Mon Mar 30 2020 02:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38317 * 126.12964 * 2 1 4 4 C 1.32888 * 108.40396 * 179.80354 * 3 2 1 5 5 N 1.38564 * 108.50075 * 0.46158 * 4 3 2 6 6 C 1.37456 * 144.87418 * 179.74476 * 5 4 3 7 7 C 1.34658 * 106.97414 * 179.97438 * 6 5 4 8 8 C 1.50693 * 125.82409 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47367 * 124.99687 * 8 7 6 10 10 H 1.08003 * 119.99965 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99966 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99606 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 120.00273 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47175 * 89.99701 * 13 11 9 15 15 H 1.48493 * 109.47324 * 210.00160 * 13 11 9 16 16 H 1.48501 * 109.46758 * 329.99972 * 13 11 9 17 17 N 1.34144 * 108.35309 * 0.02562 * 7 6 5 18 18 C 1.31698 * 109.28778 * 0.02562 * 17 7 6 19 19 H 1.09002 * 109.47391 * 269.69385 * 1 2 3 20 20 H 1.09001 * 109.46813 * 149.69441 * 1 2 3 21 21 H 1.09004 * 109.47041 * 29.69568 * 1 2 3 22 22 H 1.07997 * 125.79831 * 359.97099 * 3 2 1 23 23 H 1.08003 * 125.74919 * 180.14290 * 4 3 2 24 24 H 1.08000 * 126.51144 * 359.91155 * 6 5 4 25 25 H 1.08998 * 109.47160 * 245.00297 * 8 7 6 26 26 H 1.09000 * 109.46893 * 5.00027 * 8 7 6 27 27 H 0.96997 * 119.99674 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2805 1.1172 0.0000 4 6 3.5463 0.7126 0.0043 5 7 3.5651 -0.6729 -0.0034 6 6 4.3711 -1.7863 -0.0090 7 6 3.5584 -2.8600 -0.0151 8 6 4.0003 -4.3006 -0.0220 9 6 3.3677 -5.0258 1.1378 10 1 2.7109 -4.4964 1.8122 11 6 3.6274 -6.3650 1.3378 12 7 3.0749 -6.9979 2.3496 13 14 4.7639 -7.2805 0.1718 14 1 6.1602 -7.1902 0.6689 15 1 4.3552 -8.7063 0.0998 16 1 4.6796 -6.6726 -1.1805 17 7 2.2883 -2.4283 -0.0139 18 6 2.2764 -1.1114 -0.0078 19 1 -0.3634 -0.0055 1.0276 20 1 -0.3633 -0.8873 -0.5186 21 1 -0.3633 0.8927 -0.5091 22 1 1.9455 2.1439 -0.0004 23 1 4.4142 1.3554 0.0076 24 1 5.4511 -1.7978 -0.0096 25 1 3.6924 -4.7706 -0.9560 26 1 5.0856 -4.3482 0.0681 27 1 3.2573 -7.9401 2.4902 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260625065.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:33 Heat of formation + Delta-G solvation = 105.903122 kcal Electronic energy + Delta-G solvation = -12644.095292 eV Core-core repulsion = 10404.194674 eV Total energy + Delta-G solvation = -2239.900619 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.08988 -39.42103 -35.39732 -34.69621 -32.25693 -30.62718 -28.69270 -27.23185 -24.80143 -22.17894 -21.72072 -20.98149 -18.89283 -17.73928 -17.28394 -16.74486 -16.33301 -15.62736 -14.91840 -14.78874 -14.43663 -14.27686 -13.92879 -13.66363 -13.17853 -12.75134 -12.32952 -12.19719 -11.80078 -11.67907 -11.52579 -10.76424 -10.63906 -9.09943 -8.47058 -8.23074 -6.26829 0.88698 1.29732 1.40066 1.44362 1.56901 1.62118 2.22029 2.32627 2.42151 3.10662 3.53477 3.76306 4.24852 4.33134 4.46439 4.50872 4.64233 4.73201 4.82440 4.98881 5.21178 5.30607 5.51531 5.60135 5.84907 6.25687 6.37556 6.62619 6.77988 7.33651 7.34260 8.95079 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.058190 B = 0.008065 C = 0.007443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.063315 B = 3470.861418 C = 3761.244013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.489 5.489 3 C 0.062 3.938 4 C -0.075 4.075 5 N -0.416 5.416 6 C -0.109 4.109 7 C 0.065 3.935 8 C 0.067 3.933 9 C -0.511 4.511 10 H 0.016 0.984 11 C 0.000 4.000 12 N -0.957 5.957 13 Si 0.961 3.039 14 H -0.257 1.257 15 H -0.283 1.283 16 H -0.246 1.246 17 N -0.555 5.555 18 C 0.344 3.656 19 H 0.073 0.927 20 H 0.064 0.936 21 H 0.134 0.866 22 H 0.255 0.745 23 H 0.216 0.784 24 H 0.200 0.800 25 H 0.029 0.971 26 H 0.052 0.948 27 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.082 19.972 -7.632 21.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.187 5.187 3 C -0.062 4.062 4 C -0.197 4.197 5 N -0.095 5.095 6 C -0.239 4.239 7 C -0.065 4.065 8 C 0.028 3.972 9 C -0.549 4.549 10 H 0.034 0.966 11 C -0.195 4.195 12 N -0.598 5.598 13 Si 0.782 3.218 14 H -0.181 1.181 15 H -0.209 1.209 16 H -0.169 1.169 17 N -0.286 5.286 18 C -0.005 4.005 19 H 0.092 0.908 20 H 0.083 0.917 21 H 0.152 0.848 22 H 0.271 0.729 23 H 0.232 0.768 24 H 0.216 0.784 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.716 19.388 -7.549 20.818 hybrid contribution 0.750 -0.519 0.154 0.925 sum 0.034 18.869 -7.394 20.266 Atomic orbital electron populations 1.22123 0.72741 1.05656 1.03965 1.43731 1.07270 1.00472 1.67268 1.22984 0.86606 0.93436 1.03156 1.22311 1.00870 0.79468 1.17079 1.43849 1.07960 1.07077 1.50636 1.22031 0.97626 0.82252 1.21951 1.20983 0.87316 0.96603 1.01600 1.17968 0.96562 0.86567 0.96056 1.21112 1.27784 0.95073 1.10952 0.96592 1.26082 0.97951 0.98166 0.97336 1.70090 1.46693 1.10849 1.32190 0.85516 0.79023 0.77144 0.80085 1.18115 1.20874 1.16924 1.70100 1.24344 1.03862 1.30312 1.21164 0.82227 0.88884 1.08218 0.90813 0.91696 0.84806 0.72942 0.76767 0.78363 0.95281 0.93037 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.82 11.19 127.77 1.43 3.25 15 2 N -0.49 -13.49 3.25 -550.10 -1.79 -15.27 15 3 C 0.06 1.10 11.45 82.49 0.94 2.05 15 4 C -0.07 -1.72 11.90 82.45 0.98 -0.74 15 5 N -0.42 -15.26 3.53 -356.28 -1.26 -16.51 15 6 C -0.11 -4.51 11.92 82.99 0.99 -3.52 15 7 C 0.06 3.30 6.28 41.38 0.26 3.56 15 8 C 0.07 3.58 4.60 29.10 0.13 3.72 15 9 C -0.51 -33.02 9.63 25.60 0.25 -32.77 15 10 H 0.02 1.17 7.98 -2.91 -0.02 1.14 15 11 C 0.00 0.01 5.47 84.66 0.46 0.47 15 12 N -0.96 -64.01 13.96 21.45 0.30 -63.71 15 13 Si 0.96 46.35 27.47 68.60 1.88 48.23 15 14 H -0.26 -11.51 7.11 99.48 0.71 -10.80 15 15 H -0.28 -13.33 7.11 99.48 0.71 -12.62 15 16 H -0.25 -11.05 6.54 99.48 0.65 -10.40 15 17 N -0.56 -29.01 11.27 -186.24 -2.10 -31.11 15 18 C 0.34 14.22 9.18 260.55 2.39 16.61 15 19 H 0.07 1.33 8.14 -2.39 -0.02 1.31 15 20 H 0.06 1.53 8.14 -2.39 -0.02 1.51 15 21 H 0.13 1.15 8.14 -2.38 -0.02 1.13 15 22 H 0.25 1.00 8.06 -2.91 -0.02 0.98 15 23 H 0.22 2.97 8.06 -2.91 -0.02 2.94 15 24 H 0.20 6.64 8.06 -2.91 -0.02 6.61 15 25 H 0.03 1.56 7.20 -2.39 -0.02 1.54 15 26 H 0.05 2.48 7.53 -2.39 -0.02 2.46 15 27 H 0.27 16.42 8.31 -92.71 -0.77 15.65 15 Total: -1.00 -90.27 241.48 5.99 -84.28 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: 1.11 Total: 1.46 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: 7.84 Total: -7.37 kcal Atomic # 7 Polarization: -121.76 SS G_CDS: -4.84 Total: -126.60 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.88 Total: 48.23 kcal Total: -90.27 5.99 -84.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260625065.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.184 kcal (2) G-P(sol) polarization free energy of solvation -90.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds